Wall clock time and date at job start Tue Mar 31 2020 11:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 120.00054 * 2 1 4 4 C 1.38210 * 119.99561 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00723 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99861 * 359.95758 * 5 4 3 7 7 C 1.38212 * 120.00173 * 179.73602 * 2 1 3 8 8 C 1.50703 * 120.00139 * 359.97438 * 7 2 1 9 9 C 1.53005 * 109.47155 * 85.00165 * 8 7 2 10 10 H 1.08996 * 109.46719 * 305.00580 * 9 8 7 11 11 C 1.52995 * 109.47040 * 65.00238 * 9 8 7 12 12 C 1.50694 * 109.46956 * 185.00305 * 9 8 7 13 13 O 1.21279 * 120.00311 * 332.92548 * 12 9 8 14 14 N 1.34776 * 119.99883 * 152.92695 * 12 9 8 15 15 C 1.46505 * 120.00006 * 5.18298 * 14 12 9 16 16 C 1.50696 * 109.46925 * 95.07230 * 15 14 12 17 17 H 1.07998 * 119.99845 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99881 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00183 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47369 * 89.99990 * 20 18 16 22 22 H 1.48500 * 109.47135 * 209.99617 * 20 18 16 23 23 H 1.48493 * 109.47134 * 329.99559 * 20 18 16 24 24 C 1.46504 * 120.00012 * 185.18639 * 14 12 9 25 25 C 1.53001 * 109.47035 * 84.07108 * 24 14 12 26 26 C 1.52995 * 109.47360 * 65.41474 * 25 24 14 27 27 C 1.53001 * 109.47000 * 185.41182 * 25 24 14 28 28 H 1.08997 * 109.47194 * 89.99904 * 1 2 3 29 29 H 1.09002 * 109.46882 * 329.99728 * 1 2 3 30 30 H 1.09004 * 109.46630 * 209.99716 * 1 2 3 31 31 H 1.07998 * 119.99608 * 0.02562 * 3 2 1 32 32 H 1.08009 * 119.99400 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00647 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00117 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47775 * 205.00496 * 8 7 2 36 36 H 1.09011 * 109.46877 * 325.00521 * 8 7 2 37 37 H 1.09004 * 109.47248 * 306.21392 * 11 9 8 38 38 H 1.09005 * 109.47140 * 66.20596 * 11 9 8 39 39 H 1.08996 * 109.47178 * 186.20473 * 11 9 8 40 40 H 1.09000 * 109.46873 * 215.07197 * 15 14 12 41 41 H 1.08995 * 109.46991 * 335.07002 * 15 14 12 42 42 H 0.97004 * 120.00275 * 180.02562 * 19 18 16 43 43 H 1.09010 * 109.46733 * 204.06517 * 24 14 12 44 44 H 1.08994 * 109.46972 * 324.06539 * 24 14 12 45 45 H 1.08996 * 109.47336 * 305.40961 * 25 24 14 46 46 H 1.09005 * 109.47155 * 299.99706 * 26 25 24 47 47 H 1.08995 * 109.47779 * 59.99729 * 26 25 24 48 48 H 1.09002 * 109.47201 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.47033 * 59.99497 * 27 25 24 50 50 H 1.08994 * 109.47503 * 179.97438 * 27 25 24 51 51 H 1.09006 * 109.47037 * 299.99985 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 2.1981 -1.1969 0.0055 8 6 1.4447 -2.5021 0.0121 9 6 1.0803 -2.8879 -1.4230 10 1 0.5305 -2.0709 -1.8903 11 6 2.3586 -3.1626 -2.2174 12 6 0.2224 -4.1267 -1.4076 13 8 0.3174 -4.9189 -0.4942 14 7 -0.6505 -4.3544 -2.4090 15 6 -0.6857 -3.4587 -3.5678 16 6 0.1706 -4.0285 -4.6692 17 1 0.6895 -4.9639 -4.5206 18 6 0.2925 -3.3551 -5.8661 19 7 -0.3390 -2.2157 -6.0468 20 14 1.3534 -4.0617 -7.2316 21 1 0.5265 -4.9416 -8.0959 22 1 1.9147 -2.9540 -8.0459 23 1 2.4625 -4.8512 -6.6385 24 6 -1.5642 -5.4974 -2.3386 25 6 -2.7983 -5.1141 -1.5194 26 6 -3.5817 -4.0260 -2.2563 27 6 -3.6881 -6.3446 -1.3317 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1327 0.0010 33 1 5.3517 -0.0001 0.0005 34 1 4.1207 -2.1323 0.0013 35 1 2.0697 -3.2803 0.4500 36 1 0.5340 -2.3929 0.6014 37 1 3.0279 -2.3060 -2.1365 38 1 2.8520 -4.0482 -1.8170 39 1 2.1067 -3.3293 -3.2647 40 1 -1.7126 -3.3604 -3.9199 41 1 -0.3045 -2.4787 -3.2812 42 1 -0.2536 -1.7421 -6.8890 43 1 -1.8702 -5.7805 -3.3458 44 1 -1.0588 -6.3377 -1.8627 45 1 -2.4856 -4.7398 -0.5447 46 1 -2.9479 -3.1493 -2.3901 47 1 -3.8945 -4.4003 -3.2310 48 1 -4.4612 -3.7533 -1.6729 49 1 -3.1299 -7.1199 -0.8068 50 1 -4.5670 -6.0717 -0.7478 51 1 -4.0008 -6.7189 -2.3065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858826854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:18 Heat of formation + Delta-G solvation = -44.581737 kcal Electronic energy + Delta-G solvation = -28024.315128 eV Core-core repulsion = 24501.295294 eV Total energy + Delta-G solvation = -3523.019835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.89556 -38.99129 -36.20809 -34.58313 -33.85955 -32.51212 -32.27175 -30.47558 -27.61027 -27.04047 -26.76354 -26.19450 -25.78495 -23.11452 -22.34358 -21.76979 -20.36827 -19.65777 -17.94221 -16.58726 -16.50649 -15.98214 -15.64468 -15.45266 -14.73079 -14.57710 -14.50180 -14.26202 -13.69448 -13.52017 -13.05600 -13.02804 -12.95276 -12.60509 -12.38666 -12.33345 -12.22228 -11.96310 -11.89313 -11.78899 -11.52238 -11.42056 -11.32731 -11.04244 -10.94439 -10.90628 -10.72371 -10.57640 -10.52211 -10.48480 -10.30790 -10.21589 -10.01394 -9.65863 -8.89547 -8.60375 -8.50580 -8.35172 -7.64161 -6.18046 -4.23878 1.52038 1.54998 3.21946 3.29716 3.32320 3.46933 3.85174 4.05022 4.33904 4.94252 4.96471 5.10929 5.14668 5.15811 5.26068 5.32723 5.34921 5.42717 5.47193 5.55357 5.58657 5.70608 5.80549 5.84705 5.90108 5.94643 5.99622 6.04893 6.06248 6.15614 6.16521 6.18515 6.30251 6.31304 6.38154 6.40270 6.43505 6.48992 6.60111 6.63860 6.65515 6.67352 6.75800 6.88299 6.91665 7.02936 7.19146 7.23638 7.59123 7.77127 8.07510 8.40781 8.80829 9.07632 9.42894 10.88342 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.005135 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.763264 B = 5451.460865 C = 7231.145323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.070 4.070 8 C -0.065 4.065 9 C -0.095 4.095 10 H 0.095 0.905 11 C -0.147 4.147 12 C 0.520 3.480 13 O -0.577 6.577 14 N -0.591 5.591 15 C 0.233 3.767 16 C -0.533 4.533 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.126 3.874 25 C -0.110 4.110 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.264 0.736 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 3.679 10.220 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.103 4.103 9 C -0.116 4.116 10 H 0.113 0.887 11 C -0.204 4.204 12 C 0.309 3.691 13 O -0.458 6.458 14 N -0.320 5.320 15 C 0.113 3.887 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.002 3.998 25 C -0.130 4.130 26 C -0.202 4.202 27 C -0.199 4.199 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.891 3.420 10.514 11.092 hybrid contribution 0.624 -0.188 -1.098 1.277 sum 1.515 3.232 9.416 10.070 Atomic orbital electron populations 1.20899 0.91359 1.02535 1.02935 1.19790 0.96076 0.92608 0.99474 1.20973 0.94232 0.97311 1.01374 1.21039 0.94305 0.97810 1.01260 1.21063 0.99543 0.92619 1.01381 1.21061 0.93670 0.98043 0.99991 1.19780 0.93662 0.94599 0.98983 1.20501 1.00006 0.93413 0.96359 1.21131 0.97699 0.96793 0.96005 0.88698 1.21852 0.95120 1.00830 1.02597 1.20452 0.79881 0.87297 0.81484 1.90569 1.69562 1.48483 1.37222 1.48196 1.34529 1.28478 1.20846 1.19574 0.98286 0.89069 0.81787 1.21457 1.29457 1.07836 0.98373 0.92148 1.24904 0.95708 0.94761 0.98287 1.69915 1.42285 1.14989 1.25613 0.86588 0.80749 0.78774 0.81962 1.20571 1.21089 1.19758 1.21315 0.89167 0.89149 1.00154 1.21479 0.95777 0.95994 0.99719 1.21871 0.99251 0.99201 0.99837 1.21747 0.99102 0.97675 1.01383 0.90570 0.91932 0.91126 0.86416 0.86577 0.86497 0.86119 0.90454 0.90891 0.92377 0.93376 0.89107 0.94383 0.94101 0.92583 0.90406 0.91521 0.91451 0.91870 0.92695 0.93753 0.92875 0.93057 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.41 36.01 0.34 -1.20 16 2 C -0.08 -1.11 5.88 -104.62 -0.62 -1.73 16 3 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 4 C -0.13 -1.52 10.05 -39.59 -0.40 -1.92 16 5 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 6 C -0.11 -1.50 8.18 -39.58 -0.32 -1.82 16 7 C -0.07 -1.03 4.58 -104.62 -0.48 -1.51 16 8 C -0.07 -1.04 3.79 -27.88 -0.11 -1.14 16 9 C -0.10 -1.73 1.96 -91.77 -0.18 -1.91 16 10 H 0.10 1.80 5.90 -51.93 -0.31 1.49 16 11 C -0.15 -2.70 8.95 37.16 0.33 -2.37 16 12 C 0.52 10.65 6.71 -10.99 -0.07 10.57 16 13 O -0.58 -12.81 15.87 5.56 0.09 -12.72 16 14 N -0.59 -12.12 2.20 -175.06 -0.38 -12.51 16 15 C 0.23 5.30 4.18 -5.19 -0.02 5.28 16 16 C -0.53 -13.41 7.69 -34.44 -0.26 -13.67 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 20 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.13 2.33 4.84 -4.04 -0.02 2.31 16 25 C -0.11 -1.75 3.08 -90.62 -0.28 -2.03 16 26 C -0.14 -2.24 8.37 37.16 0.31 -1.93 16 27 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.07 0.90 6.02 -51.93 -0.31 0.59 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.08 1.26 7.94 -51.93 -0.41 0.84 16 36 H 0.07 1.14 6.16 -51.92 -0.32 0.82 16 37 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.92 6.17 -51.93 -0.32 1.60 16 40 H 0.04 0.91 6.45 -51.93 -0.34 0.57 16 41 H 0.04 0.97 5.60 -51.93 -0.29 0.68 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.08 1.45 8.03 -51.92 -0.42 1.04 16 44 H 0.07 1.27 7.54 -51.93 -0.39 0.88 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.09 6.26 -51.93 -0.32 0.76 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -27.85 398.03 -9.68 -37.54 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.79 Total: 6.43 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.32 Total: -16.87 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.35 Total: -35.70 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.85 -9.68 -37.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858826854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.044 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds