Wall clock time and date at job start Tue Mar 31 2020 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 120.00054 * 2 1 4 4 C 1.38210 * 119.99561 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00723 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99861 * 359.95758 * 5 4 3 7 7 C 1.38212 * 120.00173 * 179.73602 * 2 1 3 8 8 C 1.50703 * 120.00139 * 359.97438 * 7 2 1 9 9 C 1.53005 * 109.47155 * 85.00165 * 8 7 2 10 10 H 1.08996 * 109.46719 * 305.00580 * 9 8 7 11 11 C 1.52995 * 109.47040 * 65.00238 * 9 8 7 12 12 C 1.50694 * 109.46956 * 185.00305 * 9 8 7 13 13 O 1.21279 * 120.00311 * 332.92548 * 12 9 8 14 14 N 1.34776 * 119.99883 * 152.92695 * 12 9 8 15 15 C 1.46505 * 120.00006 * 5.18298 * 14 12 9 16 16 C 1.50696 * 109.46925 * 95.07230 * 15 14 12 17 17 H 1.07998 * 119.99845 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99881 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00183 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47369 * 89.99990 * 20 18 16 22 22 H 1.48500 * 109.47135 * 209.99617 * 20 18 16 23 23 H 1.48493 * 109.47134 * 329.99559 * 20 18 16 24 24 C 1.46504 * 120.00012 * 185.18639 * 14 12 9 25 25 C 1.53001 * 109.47035 * 84.07108 * 24 14 12 26 26 C 1.52995 * 109.47360 * 65.41474 * 25 24 14 27 27 C 1.53001 * 109.47000 * 185.41182 * 25 24 14 28 28 H 1.08997 * 109.47194 * 89.99904 * 1 2 3 29 29 H 1.09002 * 109.46882 * 329.99728 * 1 2 3 30 30 H 1.09004 * 109.46630 * 209.99716 * 1 2 3 31 31 H 1.07998 * 119.99608 * 0.02562 * 3 2 1 32 32 H 1.08009 * 119.99400 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00647 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00117 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47775 * 205.00496 * 8 7 2 36 36 H 1.09011 * 109.46877 * 325.00521 * 8 7 2 37 37 H 1.09004 * 109.47248 * 306.21392 * 11 9 8 38 38 H 1.09005 * 109.47140 * 66.20596 * 11 9 8 39 39 H 1.08996 * 109.47178 * 186.20473 * 11 9 8 40 40 H 1.09000 * 109.46873 * 215.07197 * 15 14 12 41 41 H 1.08995 * 109.46991 * 335.07002 * 15 14 12 42 42 H 0.97004 * 120.00275 * 180.02562 * 19 18 16 43 43 H 1.09010 * 109.46733 * 204.06517 * 24 14 12 44 44 H 1.08994 * 109.46972 * 324.06539 * 24 14 12 45 45 H 1.08996 * 109.47336 * 305.40961 * 25 24 14 46 46 H 1.09005 * 109.47155 * 299.99706 * 26 25 24 47 47 H 1.08995 * 109.47779 * 59.99729 * 26 25 24 48 48 H 1.09002 * 109.47201 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.47033 * 59.99497 * 27 25 24 50 50 H 1.08994 * 109.47503 * 179.97438 * 27 25 24 51 51 H 1.09006 * 109.47037 * 299.99985 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 2.1981 -1.1969 0.0055 8 6 1.4447 -2.5021 0.0121 9 6 1.0803 -2.8879 -1.4230 10 1 0.5305 -2.0709 -1.8903 11 6 2.3586 -3.1626 -2.2174 12 6 0.2224 -4.1267 -1.4076 13 8 0.3174 -4.9189 -0.4942 14 7 -0.6505 -4.3544 -2.4090 15 6 -0.6857 -3.4587 -3.5678 16 6 0.1706 -4.0285 -4.6692 17 1 0.6895 -4.9639 -4.5206 18 6 0.2925 -3.3551 -5.8661 19 7 -0.3390 -2.2157 -6.0468 20 14 1.3534 -4.0617 -7.2316 21 1 0.5265 -4.9416 -8.0959 22 1 1.9147 -2.9540 -8.0459 23 1 2.4625 -4.8512 -6.6385 24 6 -1.5642 -5.4974 -2.3386 25 6 -2.7983 -5.1141 -1.5194 26 6 -3.5817 -4.0260 -2.2563 27 6 -3.6881 -6.3446 -1.3317 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1327 0.0010 33 1 5.3517 -0.0001 0.0005 34 1 4.1207 -2.1323 0.0013 35 1 2.0697 -3.2803 0.4500 36 1 0.5340 -2.3929 0.6014 37 1 3.0279 -2.3060 -2.1365 38 1 2.8520 -4.0482 -1.8170 39 1 2.1067 -3.3293 -3.2647 40 1 -1.7126 -3.3604 -3.9199 41 1 -0.3045 -2.4787 -3.2812 42 1 -0.2536 -1.7421 -6.8890 43 1 -1.8702 -5.7805 -3.3458 44 1 -1.0588 -6.3377 -1.8627 45 1 -2.4856 -4.7398 -0.5447 46 1 -2.9479 -3.1493 -2.3901 47 1 -3.8945 -4.4003 -3.2310 48 1 -4.4612 -3.7533 -1.6729 49 1 -3.1299 -7.1199 -0.8068 50 1 -4.5670 -6.0717 -0.7478 51 1 -4.0008 -6.7189 -2.3065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858826854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:17 Heat of formation + Delta-G solvation = -55.107105 kcal Electronic energy + Delta-G solvation = -28024.771543 eV Core-core repulsion = 24501.295294 eV Total energy + Delta-G solvation = -3523.476249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31789 -40.25307 -37.68842 -36.11193 -35.37141 -34.12737 -33.54378 -31.65843 -29.42838 -28.16321 -27.99685 -27.54450 -27.17943 -24.94004 -23.77744 -22.82814 -21.54490 -20.93540 -19.60876 -18.46599 -18.09115 -17.27020 -17.03873 -16.64493 -16.35637 -16.02038 -15.86317 -15.56703 -15.00785 -14.89171 -14.48187 -14.31087 -14.20950 -13.96738 -13.74704 -13.65971 -13.51578 -13.35355 -13.15868 -13.06012 -13.00784 -12.93117 -12.75008 -12.68204 -12.58625 -12.19846 -12.07172 -12.03450 -11.93712 -11.82188 -11.69472 -11.61212 -11.57090 -11.45644 -10.66649 -10.39159 -9.61826 -9.41250 -9.36945 -8.17555 -6.29402 0.49739 0.54630 1.39511 1.42623 1.50787 1.79376 2.32324 2.46646 2.91741 3.12654 3.63021 3.87752 3.94286 4.03944 4.06122 4.09635 4.15049 4.20334 4.22683 4.29867 4.41319 4.49584 4.60350 4.65379 4.70955 4.74652 4.80265 4.82318 4.91086 4.91721 4.93429 4.94346 4.96892 5.01538 5.02677 5.07119 5.14618 5.21157 5.24581 5.30004 5.40166 5.41948 5.44620 5.47089 5.65419 5.67388 5.69635 5.84864 5.91437 6.10622 6.20407 6.62157 6.85413 7.33554 7.45199 8.87544 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.005135 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.763264 B = 5451.460865 C = 7231.145323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.126 4.126 5 C -0.131 4.131 6 C -0.122 4.122 7 C -0.090 4.090 8 C -0.052 4.052 9 C -0.088 4.088 10 H 0.085 0.915 11 C -0.136 4.136 12 C 0.516 3.484 13 O -0.595 6.595 14 N -0.593 5.593 15 C 0.251 3.749 16 C -0.536 4.536 17 H 0.048 0.952 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.946 3.054 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.273 1.273 24 C 0.122 3.878 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.266 0.734 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 4.358 10.613 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.090 4.090 9 C -0.109 4.109 10 H 0.103 0.897 11 C -0.194 4.194 12 C 0.305 3.695 13 O -0.478 6.478 14 N -0.322 5.322 15 C 0.130 3.870 16 C -0.575 4.575 17 H 0.067 0.933 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.001 4.001 25 C -0.122 4.122 26 C -0.196 4.196 27 C -0.193 4.193 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.323 4.088 10.910 11.726 hybrid contribution 0.503 -0.381 -1.190 1.347 sum 1.826 3.706 9.721 10.562 Atomic orbital electron populations 1.20878 0.91028 1.03314 1.02269 1.19999 0.96615 0.93006 0.99898 1.21284 0.94910 0.97582 1.00818 1.21432 0.94235 0.98925 0.99749 1.21392 1.00896 0.92177 1.00439 1.21233 0.93368 0.99100 1.00270 1.19734 0.94231 0.94075 1.00924 1.20331 1.00049 0.94232 0.94391 1.21072 0.96960 0.95219 0.97656 0.89736 1.21729 0.95470 1.01605 1.00583 1.20851 0.79821 0.87770 0.81031 1.90548 1.70128 1.49333 1.37773 1.48202 1.35061 1.28649 1.20267 1.19212 0.97003 0.88875 0.81890 1.21579 1.29426 1.07316 0.99170 0.93330 1.25514 0.96698 0.95019 1.00136 1.69995 1.43411 1.15917 1.26200 0.85734 0.79315 0.78180 0.79571 1.20096 1.20687 1.19763 1.21463 0.89924 0.88343 1.00389 1.21398 0.95083 0.97463 0.98289 1.21806 0.99598 0.98031 1.00165 1.21704 0.99124 0.96174 1.02273 0.91890 0.89785 0.91757 0.84415 0.83797 0.84080 0.85629 0.91037 0.91067 0.90819 0.93152 0.92025 0.95462 0.95141 0.92454 0.90828 0.92229 0.92823 0.94214 0.92821 0.91358 0.92684 0.91104 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.41 71.24 0.67 -2.32 16 2 C -0.10 -2.60 5.88 -19.86 -0.12 -2.71 16 3 C -0.13 -3.01 9.70 22.27 0.22 -2.80 16 4 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 5 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 6 C -0.12 -3.20 8.18 22.27 0.18 -3.02 16 7 C -0.09 -2.61 4.58 -19.86 -0.09 -2.70 16 8 C -0.05 -1.69 3.79 29.85 0.11 -1.58 16 9 C -0.09 -3.29 1.96 -11.54 -0.02 -3.31 16 10 H 0.08 3.34 5.90 -2.39 -0.01 3.33 16 11 C -0.14 -5.11 8.95 71.98 0.64 -4.47 16 12 C 0.52 21.70 6.71 87.66 0.59 22.29 16 13 O -0.59 -26.93 15.87 -3.03 -0.05 -26.98 16 14 N -0.59 -25.06 2.20 -826.15 -1.81 -26.87 16 15 C 0.25 11.79 4.18 85.63 0.36 12.15 16 16 C -0.54 -27.52 7.69 25.60 0.20 -27.33 16 17 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 18 C 0.03 1.40 5.46 84.65 0.46 1.86 16 19 N -0.92 -49.70 13.29 21.45 0.28 -49.42 16 20 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 C 0.12 4.59 4.84 86.38 0.42 5.00 16 25 C -0.10 -3.24 3.08 -10.79 -0.03 -3.27 16 26 C -0.14 -4.26 8.37 71.98 0.60 -3.66 16 27 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 30 H 0.06 1.67 6.02 -2.38 -0.01 1.65 16 31 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.07 2.36 7.94 -2.39 -0.02 2.34 16 36 H 0.07 2.28 6.16 -2.38 -0.01 2.27 16 37 H 0.07 2.49 6.13 -2.38 -0.01 2.48 16 38 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.06 2.67 6.17 -2.39 -0.01 2.66 16 40 H 0.03 1.35 6.45 -2.39 -0.02 1.33 16 41 H 0.03 1.51 5.60 -2.39 -0.01 1.50 16 42 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.07 2.80 8.03 -2.38 -0.02 2.78 16 44 H 0.06 2.31 7.54 -2.39 -0.02 2.29 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.04 1.39 6.26 -2.38 -0.01 1.37 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -59.39 398.03 6.63 -52.76 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.89 Total: 30.47 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 5.30 Total: -23.74 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.53 Total: -76.29 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -59.39 6.63 -52.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858826854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.349 kcal (2) G-P(sol) polarization free energy of solvation -59.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds