Wall clock time and date at job start Tue Mar 31 2020 11:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 C 1.53001 * 109.46954 * 240.00146 * 2 1 3 5 5 C 1.50694 * 109.47286 * 59.99704 * 4 2 1 6 6 H 1.08005 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99774 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99730 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46975 * 120.00065 * 9 7 5 12 12 H 1.48500 * 109.46958 * 239.99507 * 9 7 5 13 13 C 1.52995 * 109.47253 * 120.00240 * 2 1 3 14 14 N 1.46908 * 109.46845 * 299.99971 * 13 2 1 15 15 C 1.46908 * 110.99886 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.20411 * 305.40396 * 16 15 14 18 18 O 1.42721 * 109.34131 * 64.99518 * 16 15 14 19 19 C 1.43212 * 113.14144 * 171.99479 * 18 16 15 20 20 C 1.52967 * 108.47199 * 289.32218 * 19 18 16 21 21 C 1.50747 * 109.76229 * 49.21484 * 20 19 18 22 22 C 1.38595 * 118.76225 * 163.15981 * 21 20 19 23 23 C 1.38074 * 120.27681 * 179.77253 * 22 21 20 24 24 C 1.38262 * 119.85802 * 359.91136 * 23 22 21 25 25 C 1.38046 * 119.89736 * 0.10378 * 24 23 22 26 26 C 1.37905 * 121.35089 * 342.97675 * 21 20 19 27 27 H 1.09003 * 109.47110 * 299.99592 * 1 2 3 28 28 H 1.08998 * 109.47644 * 59.99804 * 1 2 3 29 29 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47343 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47090 * 300.00078 * 3 2 1 32 32 H 1.08999 * 109.46977 * 59.99726 * 3 2 1 33 33 H 1.08991 * 109.47301 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47109 * 299.99995 * 4 2 1 35 35 H 0.96999 * 119.99560 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47543 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47655 * 59.99835 * 13 2 1 38 38 H 1.00893 * 110.99653 * 303.95014 * 14 13 2 39 39 H 1.09001 * 109.47007 * 59.99419 * 15 14 13 40 40 H 1.09007 * 109.46795 * 299.99964 * 15 14 13 41 41 H 1.09001 * 109.47545 * 179.59493 * 17 16 15 42 42 H 1.09004 * 109.46845 * 299.59713 * 17 16 15 43 43 H 1.09002 * 109.47221 * 59.59093 * 17 16 15 44 44 H 1.09000 * 109.64033 * 169.62649 * 19 18 16 45 45 H 1.08997 * 109.79902 * 49.11089 * 19 18 16 46 46 H 1.09005 * 109.42609 * 289.12704 * 20 19 18 47 47 H 1.09003 * 109.42230 * 169.30528 * 20 19 18 48 48 H 1.08002 * 119.86396 * 359.49969 * 22 21 20 49 49 H 1.07997 * 120.06790 * 179.91055 * 23 22 21 50 50 H 1.07999 * 120.04630 * 180.02562 * 24 23 22 51 51 H 1.08008 * 119.84645 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8702 -0.4823 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 0.4245 1.5665 -4.8530 11 1 2.4033 0.8646 -6.0656 12 1 0.4223 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0219 -0.6946 3.6704 16 6 1.4923 0.0532 4.8956 17 6 1.8918 1.5268 4.7973 18 8 0.0693 -0.0492 4.9332 19 6 -0.5002 0.4653 6.1423 20 6 -0.1497 -0.4872 7.2867 21 6 1.3263 -0.7923 7.2620 22 6 1.9138 -1.3368 8.3931 23 6 3.2624 -1.6329 8.4031 24 6 4.0295 -1.3868 7.2795 25 6 3.4451 -0.8442 6.1526 26 6 2.0916 -0.5442 6.1420 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7217 -1.2491 34 1 1.6766 -1.7489 -1.2493 35 1 2.8600 -1.8833 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2492 38 1 1.8198 0.9435 2.4401 39 1 3.1118 -0.6941 3.6868 40 1 1.6588 -1.7222 3.6873 41 1 1.5104 2.0654 5.6648 42 1 2.9784 1.6076 4.7683 43 1 1.4712 1.9575 3.8885 44 1 -1.5833 0.5303 6.0384 45 1 -0.0922 1.4543 6.3509 46 1 -0.7132 -1.4133 7.1731 47 1 -0.4077 -0.0214 8.2379 48 1 1.3151 -1.5262 9.2718 49 1 3.7170 -2.0557 9.2868 50 1 5.0845 -1.6176 7.2839 51 1 4.0451 -0.6528 5.2752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883339768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:43 Heat of formation + Delta-G solvation = -34.806595 kcal Electronic energy + Delta-G solvation = -27303.135076 eV Core-core repulsion = 23780.539123 eV Total energy + Delta-G solvation = -3522.595953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88601 -38.06782 -37.40389 -35.16706 -33.05954 -32.44017 -31.72392 -29.95924 -28.63287 -27.14964 -26.28883 -26.22872 -24.60571 -23.99412 -23.28208 -22.18036 -20.96668 -19.53535 -17.91463 -17.51739 -16.54927 -16.17495 -15.80426 -15.43714 -15.32883 -14.84155 -14.53947 -14.31337 -14.05633 -13.91518 -13.72933 -13.26739 -13.03829 -12.99735 -12.61383 -12.51494 -12.35406 -12.12446 -12.00546 -11.96876 -11.87600 -11.63959 -11.39604 -11.01840 -10.90035 -10.81084 -10.70863 -10.52722 -10.43430 -10.19362 -10.04310 -9.66463 -9.62041 -9.03616 -8.95478 -8.84410 -8.74957 -8.28161 -7.96807 -5.92610 -3.92249 1.07859 1.12373 3.34966 3.42738 3.45846 3.46536 3.67073 4.24089 4.40598 4.50640 4.54543 4.66001 4.75010 4.84557 4.91921 4.93760 4.97939 5.17697 5.20189 5.34221 5.42753 5.43340 5.51294 5.54319 5.65724 5.67391 5.76674 5.77810 5.83298 5.84601 5.90201 6.03349 6.09509 6.22265 6.26964 6.29766 6.35904 6.40745 6.57622 6.73931 6.75446 6.85721 6.90323 7.13762 7.27255 7.30292 7.34223 7.47320 7.73671 7.77710 7.91359 8.08364 8.53160 9.13487 9.70335 11.19185 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.002572 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.749949 B =10884.466696 C =11402.169188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.677 5.677 15 C 0.075 3.925 16 C 0.161 3.839 17 C -0.176 4.176 18 O -0.342 6.342 19 C 0.052 3.948 20 C -0.116 4.116 21 C -0.070 4.070 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.101 4.101 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.258 0.742 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.337 0.663 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 3.347 26.786 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.310 5.310 15 C -0.055 4.055 16 C 0.121 3.879 17 C -0.233 4.233 18 O -0.260 6.260 19 C -0.025 4.025 20 C -0.153 4.153 21 C -0.071 4.071 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.102 4.102 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.306 2.839 26.488 26.672 hybrid contribution 0.960 0.581 -0.575 1.261 sum -0.346 3.420 25.913 26.140 Atomic orbital electron populations 1.21591 0.94900 1.00619 1.00171 1.20609 0.95958 0.94868 0.94312 1.21772 0.99588 0.96876 1.00382 1.19130 0.95837 0.95250 0.90233 1.21285 1.30529 1.11832 0.90595 0.92232 1.25023 0.95463 0.95149 0.99053 1.69981 1.37459 1.23271 1.23109 0.86613 0.78567 0.79755 0.83532 1.19773 1.21246 1.21176 1.22121 0.96097 0.98285 0.89366 1.60533 1.63732 1.06150 1.00611 1.21964 0.96290 0.98866 0.88383 1.20200 0.81780 0.94325 0.91622 1.22425 1.02031 0.95656 1.03203 1.88308 1.18049 1.82636 1.36975 1.22639 0.99285 0.95785 0.84805 1.21159 0.92494 1.01530 1.00147 1.19524 0.95506 0.98800 0.93230 1.21056 0.95170 0.99950 0.97752 1.21106 0.94066 1.00130 0.98388 1.21105 0.99956 0.99707 0.93352 1.21139 0.94172 0.98805 0.98507 1.20136 0.94275 1.00212 0.95595 0.93685 0.92837 0.94209 0.94175 0.91715 0.94885 0.96971 0.96668 0.93272 0.96046 0.91542 0.84192 0.94059 0.90297 0.92155 0.91611 0.90269 0.88379 0.92638 0.89660 0.90023 0.86119 0.86094 0.85951 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.13 -2.42 7.89 37.15 0.29 -2.13 16 4 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 5 C -0.50 -13.93 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 14 N -0.68 -10.25 5.57 -113.77 -0.63 -10.88 16 15 C 0.07 0.99 4.62 -3.82 -0.02 0.97 16 16 C 0.16 1.91 0.75 -91.80 -0.07 1.84 16 17 C -0.18 -1.84 7.93 37.16 0.29 -1.54 16 18 O -0.34 -4.49 10.14 -35.23 -0.36 -4.84 16 19 C 0.05 0.50 6.72 37.14 0.25 0.75 16 20 C -0.12 -1.00 6.00 -27.88 -0.17 -1.17 16 21 C -0.07 -0.72 5.78 -104.59 -0.60 -1.33 16 22 C -0.12 -1.09 9.67 -39.51 -0.38 -1.47 16 23 C -0.12 -1.02 10.05 -39.63 -0.40 -1.42 16 24 C -0.12 -1.12 10.05 -39.64 -0.40 -1.52 16 25 C -0.11 -1.11 8.92 -39.50 -0.35 -1.46 16 26 C -0.10 -1.13 4.75 -104.62 -0.50 -1.63 16 27 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.32 6.62 -51.92 -0.34 0.97 16 32 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.34 4.81 4.61 -39.30 -0.18 4.63 16 39 H 0.04 0.50 6.30 -51.93 -0.33 0.18 16 40 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 42 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.08 0.88 6.46 -51.93 -0.34 0.54 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.49 6.23 -51.93 -0.32 0.17 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.12 1.18 6.45 -52.48 -0.34 0.84 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -31.02 385.03 -10.42 -41.44 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.61 Total: 2.27 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.33 Total: -24.19 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.10 Total: -37.27 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.36 Total: -4.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.02 -10.42 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883339768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.632 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds