Wall clock time and date at job start Tue Mar 31 2020 11:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 C 1.53001 * 109.46954 * 240.00146 * 2 1 3 5 5 C 1.50694 * 109.47286 * 59.99704 * 4 2 1 6 6 H 1.08005 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99774 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99730 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46975 * 120.00065 * 9 7 5 12 12 H 1.48500 * 109.46958 * 239.99507 * 9 7 5 13 13 C 1.52995 * 109.47253 * 120.00240 * 2 1 3 14 14 N 1.46908 * 109.46845 * 299.99971 * 13 2 1 15 15 C 1.46908 * 110.99886 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.20411 * 305.40396 * 16 15 14 18 18 O 1.42721 * 109.34131 * 64.99518 * 16 15 14 19 19 C 1.43212 * 113.14144 * 171.99479 * 18 16 15 20 20 C 1.52967 * 108.47199 * 289.32218 * 19 18 16 21 21 C 1.50747 * 109.76229 * 49.21484 * 20 19 18 22 22 C 1.38595 * 118.76225 * 163.15981 * 21 20 19 23 23 C 1.38074 * 120.27681 * 179.77253 * 22 21 20 24 24 C 1.38262 * 119.85802 * 359.91136 * 23 22 21 25 25 C 1.38046 * 119.89736 * 0.10378 * 24 23 22 26 26 C 1.37905 * 121.35089 * 342.97675 * 21 20 19 27 27 H 1.09003 * 109.47110 * 299.99592 * 1 2 3 28 28 H 1.08998 * 109.47644 * 59.99804 * 1 2 3 29 29 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47343 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47090 * 300.00078 * 3 2 1 32 32 H 1.08999 * 109.46977 * 59.99726 * 3 2 1 33 33 H 1.08991 * 109.47301 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47109 * 299.99995 * 4 2 1 35 35 H 0.96999 * 119.99560 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47543 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47655 * 59.99835 * 13 2 1 38 38 H 1.00893 * 110.99653 * 303.95014 * 14 13 2 39 39 H 1.09001 * 109.47007 * 59.99419 * 15 14 13 40 40 H 1.09007 * 109.46795 * 299.99964 * 15 14 13 41 41 H 1.09001 * 109.47545 * 179.59493 * 17 16 15 42 42 H 1.09004 * 109.46845 * 299.59713 * 17 16 15 43 43 H 1.09002 * 109.47221 * 59.59093 * 17 16 15 44 44 H 1.09000 * 109.64033 * 169.62649 * 19 18 16 45 45 H 1.08997 * 109.79902 * 49.11089 * 19 18 16 46 46 H 1.09005 * 109.42609 * 289.12704 * 20 19 18 47 47 H 1.09003 * 109.42230 * 169.30528 * 20 19 18 48 48 H 1.08002 * 119.86396 * 359.49969 * 22 21 20 49 49 H 1.07997 * 120.06790 * 179.91055 * 23 22 21 50 50 H 1.07999 * 120.04630 * 180.02562 * 24 23 22 51 51 H 1.08008 * 119.84645 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8702 -0.4823 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 0.4245 1.5665 -4.8530 11 1 2.4033 0.8646 -6.0656 12 1 0.4223 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0219 -0.6946 3.6704 16 6 1.4923 0.0532 4.8956 17 6 1.8918 1.5268 4.7973 18 8 0.0693 -0.0492 4.9332 19 6 -0.5002 0.4653 6.1423 20 6 -0.1497 -0.4872 7.2867 21 6 1.3263 -0.7923 7.2620 22 6 1.9138 -1.3368 8.3931 23 6 3.2624 -1.6329 8.4031 24 6 4.0295 -1.3868 7.2795 25 6 3.4451 -0.8442 6.1526 26 6 2.0916 -0.5442 6.1420 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7217 -1.2491 34 1 1.6766 -1.7489 -1.2493 35 1 2.8600 -1.8833 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2492 38 1 1.8198 0.9435 2.4401 39 1 3.1118 -0.6941 3.6868 40 1 1.6588 -1.7222 3.6873 41 1 1.5104 2.0654 5.6648 42 1 2.9784 1.6076 4.7683 43 1 1.4712 1.9575 3.8885 44 1 -1.5833 0.5303 6.0384 45 1 -0.0922 1.4543 6.3509 46 1 -0.7132 -1.4133 7.1731 47 1 -0.4077 -0.0214 8.2379 48 1 1.3151 -1.5262 9.2718 49 1 3.7170 -2.0557 9.2868 50 1 5.0845 -1.6176 7.2839 51 1 4.0451 -0.6528 5.2752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883339768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:43 Heat of formation + Delta-G solvation = -51.631306 kcal Electronic energy + Delta-G solvation = -27303.864650 eV Core-core repulsion = 23780.539123 eV Total energy + Delta-G solvation = -3523.325527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66613 -39.26298 -38.52008 -36.36772 -34.61762 -33.57316 -32.93451 -30.73360 -29.39716 -29.05519 -27.87404 -27.56397 -26.07282 -24.71483 -24.39935 -23.65425 -21.82491 -20.32295 -19.54685 -18.33373 -18.29640 -17.46320 -16.65065 -16.59576 -16.39023 -16.11120 -15.72536 -15.56962 -15.05242 -14.84771 -14.81074 -14.63668 -14.39191 -14.04559 -13.89716 -13.63220 -13.60881 -13.43020 -13.18009 -12.89449 -12.78867 -12.74821 -12.67765 -12.62481 -12.44109 -12.29443 -12.21004 -12.09904 -11.90130 -11.68855 -11.36948 -11.28108 -10.84881 -10.71538 -10.50140 -10.46280 -9.71326 -9.54395 -9.23116 -8.13073 -6.19810 0.37157 0.43409 1.40664 1.41663 1.54052 2.44549 2.74131 2.87059 3.20891 3.21506 3.65955 3.74786 3.87977 3.96239 3.99788 4.15821 4.19669 4.22639 4.26248 4.30506 4.40266 4.46779 4.54540 4.60518 4.66455 4.69444 4.75879 4.80052 4.83421 4.88596 4.94128 4.97554 5.03582 5.08074 5.10004 5.14894 5.22625 5.23517 5.28310 5.52455 5.53125 5.55706 5.59145 5.59677 5.63955 5.67891 5.88852 5.93989 6.06141 6.07551 6.34045 6.38817 6.57074 6.95431 7.47363 8.99622 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.002572 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.749949 B =10884.466696 C =11402.169188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.053 4.053 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.082 3.918 14 N -0.675 5.675 15 C 0.076 3.924 16 C 0.165 3.835 17 C -0.172 4.172 18 O -0.371 6.371 19 C 0.046 3.954 20 C -0.113 4.113 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.120 4.120 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.065 0.935 33 H -0.014 1.014 34 H -0.018 1.018 35 H 0.259 0.741 36 H 0.020 0.980 37 H 0.051 0.949 38 H 0.345 0.655 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.143 0.857 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 4.834 28.747 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.054 4.054 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.047 4.047 14 N -0.309 5.309 15 C -0.053 4.053 16 C 0.125 3.875 17 C -0.229 4.229 18 O -0.290 6.290 19 C -0.030 4.030 20 C -0.150 4.150 21 C -0.086 4.086 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.121 4.121 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.004 0.996 34 H 0.000 1.000 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.167 0.833 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.158 0.842 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.768 4.345 28.470 28.854 hybrid contribution 1.115 0.058 -1.097 1.565 sum -0.654 4.403 27.373 27.732 Atomic orbital electron populations 1.21486 0.94463 0.99897 1.00425 1.20469 0.96170 0.95683 0.93035 1.21681 0.99557 0.95480 1.01179 1.19012 0.94026 0.94036 0.92730 1.21644 1.30048 1.11856 0.91390 0.91564 1.25934 0.95753 0.95937 1.02604 1.70121 1.38973 1.24986 1.23938 0.85515 0.78122 0.78809 0.79333 1.18423 1.20753 1.20920 1.21824 0.95855 0.97432 0.89603 1.60437 1.63777 1.06447 1.00206 1.21966 0.97019 0.98036 0.88313 1.20095 0.81503 0.94816 0.91091 1.22389 1.02516 0.94771 1.03259 1.88246 1.18678 1.83235 1.38865 1.22844 0.99860 0.96271 0.84043 1.21167 0.91579 1.01342 1.00869 1.19804 0.96306 0.99083 0.93447 1.21363 0.95677 0.99280 0.98059 1.21459 0.94062 0.99372 0.99000 1.21388 1.01023 0.99268 0.93175 1.21268 0.94121 0.99445 0.99201 1.20161 0.94793 1.01428 0.95678 0.91574 0.94191 0.95450 0.94208 0.93328 0.91576 0.99612 0.99950 0.93196 0.96137 0.93005 0.83328 0.92915 0.92116 0.91248 0.90855 0.90889 0.87216 0.91903 0.89976 0.87637 0.83967 0.83704 0.84236 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 2 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 3 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.51 -28.72 7.65 25.60 0.20 -28.52 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.08 2.95 4.65 86.30 0.40 3.35 16 14 N -0.67 -19.96 5.57 -513.86 -2.86 -22.82 16 15 C 0.08 2.00 4.62 86.30 0.40 2.40 16 16 C 0.17 3.77 0.75 -11.56 -0.01 3.76 16 17 C -0.17 -3.34 7.93 71.98 0.57 -2.76 16 18 O -0.37 -9.43 10.14 -148.98 -1.51 -10.94 16 19 C 0.05 0.81 6.72 71.97 0.48 1.30 16 20 C -0.11 -1.73 6.00 29.85 0.18 -1.55 16 21 C -0.09 -1.63 5.78 -19.84 -0.11 -1.75 16 22 C -0.13 -1.97 9.67 22.32 0.22 -1.75 16 23 C -0.12 -1.79 10.05 22.24 0.22 -1.56 16 24 C -0.13 -2.15 10.05 22.23 0.22 -1.93 16 25 C -0.12 -2.39 8.92 22.32 0.20 -2.19 16 26 C -0.12 -2.55 4.75 -19.86 -0.09 -2.64 16 27 H 0.07 2.35 7.60 -2.39 -0.02 2.34 16 28 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.93 6.62 -2.38 -0.02 1.91 16 32 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.34 9.28 4.61 -89.70 -0.41 8.87 16 39 H 0.05 1.26 6.30 -2.39 -0.02 1.25 16 40 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.07 1.20 6.49 -2.39 -0.02 1.19 16 42 H 0.07 1.29 8.05 -2.38 -0.02 1.27 16 43 H 0.07 1.49 6.46 -2.39 -0.02 1.47 16 44 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 0.99 6.23 -2.39 -0.01 0.98 16 46 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 49 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 50 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 51 H 0.13 2.29 6.45 -2.91 -0.02 2.27 16 Total: -1.00 -67.82 385.03 3.00 -64.82 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.49 Total: 20.99 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.57 Total: -41.25 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.58 Total: -80.67 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.51 Total: -10.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.82 3.00 -64.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883339768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds