Wall clock time and date at job start Tue Mar 31 2020 11:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46893 * 109.47186 * 60.00040 * 13 2 1 15 15 C 1.46903 * 111.00119 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47135 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.34259 * 59.68253 * 16 15 14 18 18 O 1.42732 * 109.33999 * 300.00095 * 16 15 14 19 19 C 1.43223 * 113.11304 * 187.98382 * 18 16 15 20 20 C 1.52977 * 108.46891 * 70.73019 * 19 18 16 21 21 C 1.50749 * 109.76751 * 310.83389 * 20 19 18 22 22 C 1.38597 * 118.76337 * 196.77889 * 21 20 19 23 23 C 1.38069 * 120.27239 * 180.14591 * 22 21 20 24 24 C 1.38261 * 119.86729 * 0.03730 * 23 22 21 25 25 C 1.38057 * 119.89291 * 359.92807 * 24 23 22 26 26 C 1.37904 * 121.35050 * 16.84026 * 21 20 19 27 27 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 28 28 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 29 29 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 32 32 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 33 33 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 37 37 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 38 38 H 1.00908 * 110.99986 * 56.04657 * 14 13 2 39 39 H 1.08998 * 109.47018 * 300.00365 * 15 14 13 40 40 H 1.09002 * 109.46496 * 60.00474 * 15 14 13 41 41 H 1.08999 * 109.46986 * 59.99742 * 17 16 15 42 42 H 1.09000 * 109.47430 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.47213 * 300.00141 * 17 16 15 44 44 H 1.09002 * 109.63238 * 190.42066 * 19 18 16 45 45 H 1.08997 * 109.63842 * 310.83304 * 19 18 16 46 46 H 1.09005 * 109.42224 * 70.92277 * 20 19 18 47 47 H 1.09001 * 109.42167 * 190.74168 * 20 19 18 48 48 H 1.07994 * 119.86232 * 0.16782 * 22 21 20 49 49 H 1.08002 * 120.06533 * 180.02562 * 23 22 21 50 50 H 1.07998 * 120.05561 * 179.97438 * 24 23 22 51 51 H 1.08002 * 119.84519 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5503 -0.0288 -2.4486 15 6 2.0218 -0.6945 -3.6703 16 6 1.4932 0.0540 -4.8955 17 6 1.9986 1.4978 -4.8642 18 8 0.0661 0.0522 -4.8713 19 6 -0.5173 0.5721 -6.0715 20 6 -0.2849 -0.4353 -7.1991 21 6 1.1653 -0.8462 -7.2248 22 6 1.6632 -1.4647 -8.3608 23 6 2.9859 -1.8568 -8.4168 24 6 3.8170 -1.6321 -7.3350 25 6 3.3219 -1.0154 -6.2033 26 6 1.9944 -0.6196 -6.1464 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 2.8622 -1.8819 4.7337 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2492 38 1 1.8198 0.9436 -2.4401 39 1 3.1116 -0.6940 -3.6869 40 1 1.6585 -1.7221 -3.6873 41 1 3.0885 1.5015 -4.8769 42 1 1.6236 2.0330 -5.7365 43 1 1.6442 1.9872 -3.9571 44 1 -1.5876 0.7177 -5.9252 45 1 -0.0492 1.5235 -6.3240 46 1 -0.9078 -1.3144 -7.0339 47 1 -0.5493 0.0211 -8.1530 48 1 1.0140 -1.6404 -9.2057 49 1 3.3704 -2.3381 -9.3039 50 1 4.8520 -1.9379 -7.3754 51 1 3.9717 -0.8407 -5.3586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883339769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:45 Heat of formation + Delta-G solvation = -52.343829 kcal Electronic energy + Delta-G solvation = -27305.093009 eV Core-core repulsion = 23781.736585 eV Total energy + Delta-G solvation = -3523.356424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65729 -39.25639 -38.51450 -36.34320 -34.61839 -33.56812 -32.94942 -30.73105 -29.38980 -29.05280 -27.87350 -27.56676 -26.04758 -24.71061 -24.38280 -23.65780 -21.83778 -20.32867 -19.53823 -18.32628 -18.27695 -17.46117 -16.65687 -16.59038 -16.37046 -16.10278 -15.70690 -15.57101 -15.04834 -14.85687 -14.80789 -14.63192 -14.37263 -14.04652 -13.89098 -13.68382 -13.60134 -13.41022 -13.18335 -12.89269 -12.76348 -12.73127 -12.70976 -12.62521 -12.44139 -12.28789 -12.20313 -12.09812 -11.93127 -11.69951 -11.36447 -11.27794 -10.84735 -10.72176 -10.48711 -10.45414 -9.71130 -9.54219 -9.22253 -8.12645 -6.19614 0.37484 0.43613 1.41451 1.44081 1.51235 2.44830 2.74538 2.86788 3.21057 3.22701 3.65598 3.74961 3.88521 3.96592 3.99010 4.16391 4.19716 4.22857 4.26301 4.30732 4.40486 4.47310 4.54389 4.60583 4.66509 4.69845 4.76136 4.79851 4.83534 4.88460 4.94171 4.97767 5.03663 5.08226 5.10096 5.14793 5.22622 5.23657 5.27854 5.52561 5.53191 5.55574 5.59294 5.59692 5.64192 5.68089 5.88962 5.93914 6.06344 6.07801 6.34514 6.39129 6.57788 6.95184 7.47444 8.99643 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.002575 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.506939 B =10871.380419 C =11381.882038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.053 4.053 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.288 1.288 11 H -0.267 1.267 12 H -0.269 1.269 13 C 0.082 3.918 14 N -0.673 5.673 15 C 0.077 3.923 16 C 0.164 3.836 17 C -0.172 4.172 18 O -0.369 6.369 19 C 0.046 3.954 20 C -0.112 4.112 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.120 4.120 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.048 0.952 33 H -0.015 1.015 34 H -0.018 1.018 35 H 0.260 0.740 36 H 0.020 0.980 37 H 0.051 0.949 38 H 0.344 0.656 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 4.612 -28.716 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.054 4.054 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.214 1.214 11 H -0.191 1.191 12 H -0.194 1.194 13 C -0.047 4.047 14 N -0.307 5.307 15 C -0.052 4.052 16 C 0.124 3.876 17 C -0.229 4.229 18 O -0.288 6.288 19 C -0.031 4.031 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.004 0.996 34 H 0.000 1.000 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.166 0.834 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.123 0.877 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.158 0.842 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.998 4.126 -28.427 28.794 hybrid contribution 1.097 0.061 1.068 1.532 sum -0.901 4.186 -27.360 27.693 Atomic orbital electron populations 1.21482 0.94470 0.99873 1.00423 1.20469 0.96162 0.95681 0.93039 1.21678 0.99535 0.95486 1.01174 1.19003 0.94003 0.94011 0.92708 1.21588 1.30205 1.11981 0.91423 0.91581 1.25933 0.95721 0.95917 1.02591 1.70109 1.38865 1.24950 1.24072 0.85625 0.78894 0.78838 0.78457 1.21359 1.19147 1.19418 1.21822 0.95837 0.97422 0.89620 1.60402 1.63736 1.06397 1.00172 1.21958 0.96988 0.97954 0.88320 1.20115 0.81756 0.94611 0.91088 1.22387 1.02128 0.95147 1.03225 1.88266 1.18036 1.84499 1.38022 1.22855 0.99873 0.95827 0.84501 1.21163 0.92132 1.00678 1.00966 1.19804 0.96181 0.98967 0.93691 1.21358 0.96376 0.98807 0.97859 1.21456 0.93776 0.99428 0.99251 1.21391 1.00969 0.99136 0.93366 1.21266 0.94739 0.98980 0.99029 1.20167 0.94871 1.01103 0.95909 0.94207 0.91557 0.95485 0.94238 0.91574 0.93334 0.99634 0.99977 0.93177 0.96157 0.93013 0.83409 0.92962 0.92162 0.90838 0.91234 0.91024 0.87253 0.91895 0.90011 0.87659 0.83996 0.83720 0.84227 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 2 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 3 C -0.12 -4.45 7.89 71.98 0.57 -3.89 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -28.91 7.65 25.60 0.20 -28.72 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.08 2.96 4.65 86.30 0.40 3.36 16 14 N -0.67 -19.99 5.55 -513.91 -2.85 -22.84 16 15 C 0.08 2.02 4.48 86.30 0.39 2.41 16 16 C 0.16 3.74 0.74 -11.56 -0.01 3.73 16 17 C -0.17 -3.29 8.04 71.98 0.58 -2.71 16 18 O -0.37 -9.38 10.06 -148.98 -1.50 -10.87 16 19 C 0.05 0.81 6.72 71.97 0.48 1.29 16 20 C -0.11 -1.74 6.00 29.86 0.18 -1.56 16 21 C -0.09 -1.64 5.78 -19.84 -0.11 -1.75 16 22 C -0.13 -1.98 9.67 22.32 0.22 -1.76 16 23 C -0.12 -1.80 10.05 22.24 0.22 -1.57 16 24 C -0.13 -2.15 10.05 22.23 0.22 -1.93 16 25 C -0.12 -2.38 8.94 22.32 0.20 -2.18 16 26 C -0.12 -2.54 4.75 -19.86 -0.09 -2.64 16 27 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 28 H 0.07 2.37 7.60 -2.39 -0.02 2.35 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 32 H 0.05 1.93 6.62 -2.38 -0.02 1.91 16 33 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 34 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.34 9.34 4.79 -89.69 -0.43 8.91 16 39 H 0.05 1.25 6.52 -2.39 -0.02 1.23 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.27 8.05 -2.39 -0.02 1.26 16 42 H 0.07 1.20 6.49 -2.39 -0.02 1.18 16 43 H 0.07 1.43 6.55 -2.39 -0.02 1.42 16 44 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 0.99 6.21 -2.39 -0.01 0.98 16 46 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 49 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 50 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 51 H 0.13 2.28 6.52 -2.91 -0.02 2.26 16 Total: -1.00 -67.80 385.43 3.01 -64.79 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.47 Total: 21.16 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.57 Total: -41.35 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.57 Total: -80.76 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.50 Total: -10.87 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.80 3.01 -64.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883339769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.451 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds