Wall clock time and date at job start Tue Mar 31 2020 12:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46970 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00585 * 0.02562 * 13 12 11 15 15 C 1.37886 * 120.00133 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99596 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47032 * 90.00081 * 17 15 13 19 19 H 1.48501 * 109.46826 * 210.00015 * 17 15 13 20 20 H 1.48504 * 109.47140 * 329.99830 * 17 15 13 21 21 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 22 22 C 1.38237 * 119.99744 * 150.00542 * 21 4 3 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 4 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 330.01753 * 21 4 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 29 29 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 30 30 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 31 31 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 32 32 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 33 33 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 34 34 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 36 36 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 37 37 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 38 38 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 39 39 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 40 40 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 41 41 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 42 42 H 1.08996 * 109.47418 * 300.00034 * 11 10 9 43 43 H 1.09001 * 109.47096 * 59.99662 * 11 10 9 44 44 H 1.09000 * 109.47415 * 300.00040 * 12 11 10 45 45 H 1.09001 * 109.47024 * 60.00163 * 12 11 10 46 46 H 0.96998 * 120.00155 * 179.97438 * 16 15 13 47 47 H 1.08005 * 120.00088 * 359.97438 * 22 21 4 48 48 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 49 49 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 50 50 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 51 51 H 1.07998 * 119.99975 * 0.02562 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2385 0.5013 -6.1481 12 6 3.7288 1.2222 -7.3977 13 6 4.2322 0.5119 -8.6277 14 1 4.8531 -0.3661 -8.5283 15 6 3.9000 0.9830 -9.8803 16 7 3.1443 2.0525 -10.0015 17 14 4.5234 0.1021 -11.4051 18 1 3.5452 -0.9392 -11.8097 19 1 4.6893 1.0812 -12.5092 20 1 5.8312 -0.5357 -11.1083 21 6 4.0717 0.7323 1.2315 22 6 5.2797 0.0609 1.1979 23 6 5.7397 -0.5910 2.3268 24 6 4.9923 -0.5706 3.4895 25 6 3.7821 0.0966 3.5217 26 6 3.3240 0.7519 2.3940 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 5.1699 2.8850 0.0009 35 1 3.7170 3.3983 -0.8905 36 1 3.7162 3.3994 0.8895 37 1 4.6165 -0.0370 -1.1057 38 1 5.3272 0.5020 -3.6489 39 1 3.8742 -0.5262 -3.6497 40 1 2.6380 1.2227 -4.9000 41 1 4.0912 2.2505 -4.8988 42 1 5.3284 0.5010 -6.1475 43 1 3.8749 -0.5263 -6.1482 44 1 2.6388 1.2221 -7.3981 45 1 4.0921 2.2499 -7.3978 46 1 2.9109 2.3841 -10.8826 47 1 5.8636 0.0451 0.2895 48 1 6.6832 -1.1158 2.3004 49 1 5.3519 -1.0796 4.3715 50 1 3.1961 0.1088 4.4287 51 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889481320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:57 Heat of formation + Delta-G solvation = -47.322122 kcal Electronic energy + Delta-G solvation = -26509.424231 eV Core-core repulsion = 22986.285564 eV Total energy + Delta-G solvation = -3523.138667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93125 -39.16540 -36.66830 -34.80595 -33.86344 -32.64966 -31.93669 -31.16545 -30.01953 -29.21295 -26.90524 -25.67089 -23.86125 -22.86497 -22.30171 -21.69446 -20.51873 -19.93641 -19.50283 -18.00191 -16.46398 -16.22657 -16.00792 -15.71083 -15.37560 -14.94101 -14.76607 -14.43389 -14.40187 -13.92859 -13.80147 -13.70339 -13.56389 -12.89498 -12.79949 -12.59483 -12.42246 -12.32949 -12.21172 -11.82535 -11.66894 -11.64093 -11.55975 -11.38591 -10.97187 -10.92762 -10.88871 -10.74722 -10.49987 -10.47772 -10.38111 -9.58779 -9.56329 -9.30077 -9.23750 -9.16889 -8.96017 -8.90023 -8.28706 -5.93545 -3.95893 0.97229 1.03915 2.77659 3.10925 3.35103 3.41056 3.44270 3.45510 4.19480 4.45128 4.50370 4.61962 4.66869 4.77174 4.84637 4.90035 4.98297 5.11778 5.19372 5.26612 5.34653 5.35770 5.40769 5.42508 5.48166 5.53029 5.62584 5.63731 5.73096 5.74734 5.81180 5.90599 5.99073 6.05759 6.10819 6.15996 6.16212 6.17879 6.19196 6.29903 6.33859 6.52535 6.59369 6.62382 6.87227 7.05193 7.22746 7.51438 7.76157 7.92478 8.08115 8.33434 8.50004 9.11843 9.67547 11.17763 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002200 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.574776 B =12725.024922 C =13188.129819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.219 3.781 5 C -0.159 4.159 6 N -0.730 5.730 7 C 0.516 3.484 8 O -0.529 6.529 9 C -0.140 4.140 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.077 4.077 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -5.107 30.973 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.170 4.170 4 C 0.133 3.867 5 C -0.217 4.217 6 N -0.384 5.384 7 C 0.304 3.696 8 O -0.405 6.405 9 C -0.180 4.180 10 C -0.139 4.139 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.077 4.077 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.282 -4.264 30.741 31.062 hybrid contribution 0.672 -0.917 -0.759 1.367 sum 1.954 -5.180 29.982 30.489 Atomic orbital electron populations 1.21751 0.95926 1.01410 1.01759 1.21524 0.95716 0.96648 1.02019 1.22098 0.93168 0.97812 1.03893 1.19101 0.93988 0.91804 0.81835 1.22210 1.01101 0.94625 1.03760 1.46332 1.54704 1.32199 1.05195 1.20994 0.79665 0.84555 0.84385 1.90635 1.37145 1.26053 1.86630 1.21811 1.02306 1.00799 0.93103 1.21430 1.01163 0.99404 0.91946 1.21648 0.99437 0.98877 0.94836 1.19092 0.96432 0.95605 0.90581 1.21286 1.31227 1.12121 0.91151 0.92786 1.25049 0.95329 0.95107 0.99145 1.69977 1.37098 1.23035 1.23351 0.86611 0.79196 0.79400 0.82882 1.20720 1.21267 1.19937 1.19872 0.94914 0.97998 0.94940 1.20981 0.95807 0.98141 0.98756 1.21137 0.99874 0.99328 0.93020 1.21175 0.95149 0.99688 0.98125 1.21156 0.96381 0.97815 0.98241 1.21076 0.99726 0.99480 0.92322 0.92966 0.93046 0.92554 0.92078 0.92070 0.91353 0.88902 0.92575 0.89569 0.91992 0.76696 0.89303 0.89310 0.91836 0.91826 0.93541 0.93550 0.96619 0.96606 0.93067 0.85969 0.85966 0.86164 0.86007 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.16 5.45 -26.73 -0.15 -1.31 16 3 C -0.13 -1.34 3.55 -26.73 -0.09 -1.43 16 4 C 0.22 2.12 0.59 -132.97 -0.08 2.04 16 5 C -0.16 -1.67 8.38 37.15 0.31 -1.36 16 6 N -0.73 -7.29 4.09 -48.69 -0.20 -7.49 16 7 C 0.52 6.84 7.25 -10.99 -0.08 6.76 16 8 O -0.53 -8.83 12.19 5.56 0.07 -8.76 16 9 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 10 C -0.10 -1.80 4.50 -26.73 -0.12 -1.93 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 12 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.08 -0.64 4.07 -104.62 -0.43 -1.07 16 22 C -0.12 -0.91 8.96 -39.58 -0.35 -1.27 16 23 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 24 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.11 -0.83 7.77 -39.58 -0.31 -1.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 7.61 -51.93 -0.39 0.26 16 31 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 32 H 0.07 0.60 6.51 -51.93 -0.34 0.26 16 33 H 0.09 1.21 6.17 -51.93 -0.32 0.89 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.13 6.16 -51.93 -0.32 0.81 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 3.12 6.67 -40.82 -0.27 2.85 16 38 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.12 0.81 6.71 -52.48 -0.35 0.46 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 51 H 0.13 0.87 6.16 -52.49 -0.32 0.55 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -32.90 399.55 -10.31 -43.21 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.94 Total: 0.18 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.97 Total: -23.25 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.54 Total: -34.41 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.90 -10.31 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889481320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.112 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds