Wall clock time and date at job start Tue Mar 31 2020 12:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46970 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00585 * 0.02562 * 13 12 11 15 15 C 1.37886 * 120.00133 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99596 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47032 * 90.00081 * 17 15 13 19 19 H 1.48501 * 109.46826 * 210.00015 * 17 15 13 20 20 H 1.48504 * 109.47140 * 329.99830 * 17 15 13 21 21 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 22 22 C 1.38237 * 119.99744 * 150.00542 * 21 4 3 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 4 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 330.01753 * 21 4 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 29 29 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 30 30 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 31 31 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 32 32 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 33 33 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 34 34 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 36 36 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 37 37 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 38 38 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 39 39 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 40 40 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 41 41 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 42 42 H 1.08996 * 109.47418 * 300.00034 * 11 10 9 43 43 H 1.09001 * 109.47096 * 59.99662 * 11 10 9 44 44 H 1.09000 * 109.47415 * 300.00040 * 12 11 10 45 45 H 1.09001 * 109.47024 * 60.00163 * 12 11 10 46 46 H 0.96998 * 120.00155 * 179.97438 * 16 15 13 47 47 H 1.08005 * 120.00088 * 359.97438 * 22 21 4 48 48 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 49 49 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 50 50 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 51 51 H 1.07998 * 119.99975 * 0.02562 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2385 0.5013 -6.1481 12 6 3.7288 1.2222 -7.3977 13 6 4.2322 0.5119 -8.6277 14 1 4.8531 -0.3661 -8.5283 15 6 3.9000 0.9830 -9.8803 16 7 3.1443 2.0525 -10.0015 17 14 4.5234 0.1021 -11.4051 18 1 3.5452 -0.9392 -11.8097 19 1 4.6893 1.0812 -12.5092 20 1 5.8312 -0.5357 -11.1083 21 6 4.0717 0.7323 1.2315 22 6 5.2797 0.0609 1.1979 23 6 5.7397 -0.5910 2.3268 24 6 4.9923 -0.5706 3.4895 25 6 3.7821 0.0966 3.5217 26 6 3.3240 0.7519 2.3940 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 5.1699 2.8850 0.0009 35 1 3.7170 3.3983 -0.8905 36 1 3.7162 3.3994 0.8895 37 1 4.6165 -0.0370 -1.1057 38 1 5.3272 0.5020 -3.6489 39 1 3.8742 -0.5262 -3.6497 40 1 2.6380 1.2227 -4.9000 41 1 4.0912 2.2505 -4.8988 42 1 5.3284 0.5010 -6.1475 43 1 3.8749 -0.5263 -6.1482 44 1 2.6388 1.2221 -7.3981 45 1 4.0921 2.2499 -7.3978 46 1 2.9109 2.3841 -10.8826 47 1 5.8636 0.0451 0.2895 48 1 6.6832 -1.1158 2.3004 49 1 5.3519 -1.0796 4.3715 50 1 3.1961 0.1088 4.4287 51 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889481320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:56 Heat of formation + Delta-G solvation = -64.193723 kcal Electronic energy + Delta-G solvation = -26510.155839 eV Core-core repulsion = 22986.285564 eV Total energy + Delta-G solvation = -3523.870274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74928 -39.97531 -37.53147 -36.50308 -34.73497 -34.55938 -32.87183 -31.74414 -31.27136 -30.29147 -27.71917 -27.42678 -24.89590 -23.83603 -23.32148 -22.47193 -21.84696 -21.28828 -20.39402 -18.78573 -18.40809 -17.29264 -16.93794 -16.76135 -16.49728 -15.99941 -15.87562 -15.52071 -15.27758 -14.96924 -14.85512 -14.56326 -14.37125 -14.24576 -13.81696 -13.61849 -13.58231 -13.41142 -13.28285 -13.11066 -13.01371 -12.84564 -12.69405 -12.36480 -12.31668 -12.13423 -12.10756 -11.94897 -11.72918 -11.62648 -11.50195 -11.36818 -11.32587 -11.09514 -10.54941 -10.48109 -10.09915 -9.77852 -9.56678 -8.18598 -6.30709 0.42701 0.52519 1.40045 1.42458 1.53502 1.73415 2.21734 2.42066 2.91024 3.13899 3.49071 3.75060 3.88190 4.01625 4.06960 4.12361 4.15840 4.17311 4.22168 4.32388 4.45026 4.54112 4.60454 4.65190 4.68605 4.69567 4.72804 4.79416 4.85653 4.87996 4.92672 4.96480 5.01338 5.07311 5.16916 5.20772 5.22938 5.27833 5.31136 5.33707 5.38707 5.44163 5.53325 5.57842 5.60626 5.66978 5.76835 5.78617 5.88351 6.11964 6.25633 6.63649 6.87677 7.35567 7.38713 8.93598 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002200 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.574776 B =12725.024922 C =13188.129819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.221 3.779 5 C -0.156 4.156 6 N -0.713 5.713 7 C 0.516 3.484 8 O -0.570 6.570 9 C -0.131 4.131 10 C -0.092 4.092 11 C -0.096 4.096 12 C 0.019 3.981 13 C -0.541 4.541 14 H 0.065 0.935 15 C -0.008 4.008 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.259 1.259 21 C -0.086 4.086 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.116 4.116 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.059 0.941 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.130 0.870 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -7.626 32.725 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.166 4.166 4 C 0.135 3.865 5 C -0.214 4.214 6 N -0.367 5.367 7 C 0.304 3.696 8 O -0.449 6.449 9 C -0.171 4.171 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.018 4.018 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.183 1.183 21 C -0.087 4.087 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.135 4.135 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.148 0.852 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.158 0.842 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.967 -6.819 32.531 33.370 hybrid contribution 0.135 -0.094 -1.229 1.240 sum 3.102 -6.913 31.302 32.206 Atomic orbital electron populations 1.21751 0.95683 1.01840 1.01543 1.21461 0.95915 0.95998 1.01836 1.22028 0.93645 0.98075 1.02891 1.19066 0.93636 0.91484 0.82301 1.22153 1.01159 0.95235 1.02833 1.46153 1.53913 1.32207 1.04399 1.20994 0.79251 0.84027 0.85358 1.90643 1.39098 1.27917 1.87242 1.21687 1.03777 1.01080 0.90532 1.21207 0.99816 0.98706 0.93331 1.21447 1.00017 0.98820 0.93044 1.19049 0.94459 0.94697 0.93582 1.21751 1.31415 1.12600 0.92136 0.91636 1.26107 0.95374 0.95872 1.03149 1.70134 1.38433 1.24820 1.24404 0.85378 0.79183 0.78122 0.77936 1.19704 1.20924 1.18324 1.19717 0.95693 0.98926 0.94339 1.21132 0.95618 0.98212 0.99571 1.21402 1.00609 0.99095 0.92784 1.21498 0.94915 0.99227 0.98777 1.21419 0.96724 0.97308 0.98579 1.21198 0.99976 0.99824 0.92456 0.92189 0.91768 0.94291 0.93427 0.90859 0.90008 0.92216 0.92310 0.92527 0.90845 0.75095 0.86665 0.86896 0.93913 0.93795 0.92185 0.92260 0.99766 0.99714 0.92864 0.85222 0.84231 0.84201 0.84208 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.11 5.45 30.60 0.17 -1.95 16 3 C -0.13 -2.61 3.55 30.60 0.11 -2.50 16 4 C 0.22 4.15 0.59 2.86 0.00 4.15 16 5 C -0.16 -3.30 8.38 71.98 0.60 -2.70 16 6 N -0.71 -13.60 4.09 -426.33 -1.74 -15.34 16 7 C 0.52 13.66 7.25 87.66 0.64 14.30 16 8 O -0.57 -20.01 12.19 -3.01 -0.04 -20.05 16 9 C -0.13 -3.28 5.70 29.85 0.17 -3.11 16 10 C -0.09 -3.36 4.50 30.60 0.14 -3.23 16 11 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 12 C 0.02 1.07 4.97 29.85 0.15 1.22 16 13 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 14 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 15 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 16 N -0.94 -59.47 13.29 21.45 0.28 -59.18 16 17 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 C -0.09 -1.30 4.07 -19.86 -0.08 -1.38 16 22 C -0.13 -1.67 8.96 22.27 0.20 -1.47 16 23 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 24 C -0.13 -1.30 10.05 22.27 0.22 -1.08 16 25 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 26 C -0.12 -1.56 7.77 22.27 0.17 -1.39 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 1.00 7.61 -2.39 -0.02 0.98 16 31 H 0.07 1.19 6.17 -2.39 -0.01 1.17 16 32 H 0.08 1.40 6.51 -2.39 -0.02 1.39 16 33 H 0.06 1.65 6.17 -2.39 -0.01 1.64 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.56 6.16 -2.39 -0.01 1.55 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 5.61 6.67 -92.71 -0.62 4.99 16 38 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 41 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 45 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.13 1.41 6.71 -2.91 -0.02 1.39 16 48 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 51 H 0.13 1.57 6.16 -2.91 -0.02 1.55 16 Total: -1.00 -74.08 399.55 5.30 -68.78 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.27 Total: 17.23 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 4.50 Total: -38.63 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.46 Total: -74.53 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.08 5.30 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889481320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.587 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds