Wall clock time and date at job start Tue Mar 31 2020 12:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 C 1.53001 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46795 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47122 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47122 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46688 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00350 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99602 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00240 * 4.74832 * 10 8 7 12 12 C 1.50697 * 109.46906 * 269.99669 * 11 10 8 13 13 H 1.08004 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00391 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99694 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47341 * 89.99663 * 16 14 12 18 18 H 1.48500 * 109.47361 * 209.99962 * 16 14 12 19 19 H 1.48503 * 109.47252 * 329.99932 * 16 14 12 20 20 C 1.39921 * 120.00051 * 184.73635 * 10 8 7 21 21 C 1.38880 * 120.06637 * 67.90141 * 20 10 8 22 22 C 1.38112 * 119.92591 * 180.29734 * 21 20 10 23 23 C 1.38279 * 120.07227 * 359.46855 * 22 21 20 24 24 C 1.50699 * 119.93129 * 180.27773 * 23 22 21 25 25 C 1.38280 * 120.14278 * 0.50982 * 23 22 21 26 26 C 1.38114 * 120.06964 * 359.76678 * 25 23 22 27 27 H 1.08991 * 109.47282 * 60.00089 * 1 2 3 28 28 H 1.09000 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47116 * 300.00026 * 1 2 3 30 30 H 1.08993 * 109.46918 * 239.99941 * 2 1 3 31 31 H 1.08999 * 109.47166 * 119.99612 * 2 1 3 32 32 H 1.08998 * 109.47418 * 59.99787 * 3 2 1 33 33 H 1.08999 * 109.46939 * 299.99751 * 3 2 1 34 34 H 1.09001 * 109.46731 * 60.00198 * 4 3 2 35 35 H 1.08999 * 109.47166 * 299.99612 * 4 3 2 36 36 H 1.08998 * 109.47103 * 59.99990 * 5 4 3 37 37 H 1.08999 * 109.47271 * 299.99944 * 5 4 3 38 38 H 1.08993 * 109.46777 * 60.00223 * 6 5 4 39 39 H 1.08999 * 109.46980 * 300.00095 * 6 5 4 40 40 H 1.09006 * 109.46987 * 60.00263 * 7 6 5 41 41 H 1.08999 * 109.47271 * 299.99917 * 7 6 5 42 42 H 1.08998 * 109.47136 * 29.98982 * 11 10 8 43 43 H 1.08997 * 109.47384 * 149.99417 * 11 10 8 44 44 H 0.96997 * 119.99949 * 179.97438 * 15 14 12 45 45 H 1.07999 * 120.03317 * 0.02829 * 21 20 10 46 46 H 1.08000 * 119.95987 * 179.70093 * 22 21 20 47 47 H 1.08997 * 109.47146 * 270.23432 * 24 23 22 48 48 H 1.09004 * 109.47265 * 30.23327 * 24 23 22 49 49 H 1.08997 * 109.47241 * 150.23012 * 24 23 22 50 50 H 1.08000 * 119.96877 * 179.74213 * 25 23 22 51 51 H 1.08001 * 120.04195 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0026 7 6 6.1198 4.3277 -0.0039 8 6 7.6268 4.3277 -0.0045 9 8 8.2333 3.2774 -0.0044 10 7 8.3007 5.4949 -0.0062 11 6 7.5719 6.7616 0.0976 12 6 7.2197 7.2531 -1.2827 13 1 7.5100 6.6795 -2.1506 14 6 6.5269 8.4350 -1.4379 15 7 6.2199 8.8641 -2.6425 16 14 6.0253 9.4274 0.0631 17 1 7.1026 10.3921 0.4013 18 1 4.7718 10.1679 -0.2293 19 1 5.8030 8.5114 1.2106 20 6 9.6963 5.4970 -0.1068 21 6 10.3095 5.0908 -1.2849 22 6 11.6874 5.0881 -1.3789 23 6 12.4560 5.4997 -0.3056 24 6 13.9591 5.5014 -0.4139 25 6 11.8485 5.9051 0.8686 26 6 10.4712 5.9047 0.9711 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9328 0.9289 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 3.7169 3.3992 0.8887 37 1 3.7162 3.3987 -0.8913 38 1 5.9724 2.3713 -0.8928 39 1 5.9740 2.3715 0.8872 40 1 5.7572 4.8421 0.8862 41 1 5.7558 4.8410 -0.8938 42 1 6.6588 6.6094 0.6730 43 1 8.1976 7.5008 0.5978 44 1 5.7321 9.6954 -2.7516 45 1 9.7096 4.7733 -2.1249 46 1 12.1650 4.7678 -2.2931 47 1 14.3476 4.5350 -0.0927 48 1 14.2486 5.6836 -1.4489 49 1 14.3683 6.2869 0.2214 50 1 12.4516 6.2220 1.7065 51 1 9.9972 6.2210 1.8885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920970226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:52 Heat of formation + Delta-G solvation = -65.058884 kcal Electronic energy + Delta-G solvation = -26158.850480 eV Core-core repulsion = 22634.942689 eV Total energy + Delta-G solvation = -3523.907790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50892 -39.68811 -37.57615 -36.92102 -35.15738 -34.66556 -33.00960 -31.91068 -31.54959 -29.93447 -28.22722 -26.77516 -24.77021 -24.05893 -23.50438 -22.44404 -21.87680 -21.60744 -20.15392 -19.12906 -18.33351 -17.65696 -17.15698 -16.66960 -16.36327 -16.06980 -16.00455 -15.45041 -15.08086 -14.89922 -14.73706 -14.55129 -14.39366 -14.36401 -14.06577 -13.96108 -13.79668 -13.24418 -13.15276 -13.03139 -12.88325 -12.80153 -12.75362 -12.51819 -12.43930 -12.15787 -12.02942 -11.98020 -11.91126 -11.74870 -11.71314 -11.48859 -11.33777 -11.31094 -10.87518 -10.75840 -10.02056 -9.88485 -9.12342 -8.31801 -6.39971 0.32853 0.46013 1.39196 1.39452 1.49548 1.62361 2.16685 2.32609 2.78266 3.01917 3.63340 3.85668 3.92599 3.98869 4.03533 4.06601 4.15272 4.17091 4.25011 4.40478 4.44009 4.47996 4.50580 4.54238 4.63758 4.70118 4.77608 4.78740 4.81710 4.83996 4.88798 4.90912 5.00530 5.02698 5.06224 5.11811 5.14244 5.17163 5.21961 5.31241 5.32819 5.36782 5.38415 5.45374 5.52215 5.56410 5.57156 5.65701 5.75731 6.08459 6.19752 6.49216 6.64073 7.18777 7.29062 8.84564 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009519 B = 0.003310 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.806766 B = 8456.928239 C =10724.712818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.131 4.131 8 C 0.514 3.486 9 O -0.582 6.582 10 N -0.562 5.562 11 C 0.220 3.780 12 C -0.540 4.540 13 H 0.026 0.974 14 C 0.021 3.979 15 N -0.941 5.941 16 Si 0.940 3.060 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.232 1.232 20 C 0.126 3.874 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.105 4.105 25 C -0.108 4.108 26 C -0.134 4.134 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.269 0.731 45 H 0.091 0.909 46 H 0.140 0.860 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.158 0.842 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -10.015 9.730 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.130 4.130 7 C -0.170 4.170 8 C 0.306 3.694 9 O -0.463 6.463 10 N -0.288 5.288 11 C 0.099 3.901 12 C -0.578 4.578 13 H 0.045 0.955 14 C -0.178 4.178 15 N -0.580 5.580 16 Si 0.763 3.237 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.155 1.155 20 C 0.036 3.964 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.098 4.098 24 C -0.162 4.162 25 C -0.127 4.127 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.158 0.842 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.176 0.824 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.949 -10.412 9.637 14.220 hybrid contribution -0.524 0.830 -0.480 1.093 sum 0.424 -9.582 9.158 13.261 Atomic orbital electron populations 1.21780 0.95409 1.01927 1.01880 1.21543 0.96278 0.96508 1.02002 1.21613 0.94694 0.97188 1.02117 1.21561 0.95841 0.95919 1.01999 1.21581 0.93354 0.97745 1.02563 1.21270 0.96130 0.93519 1.02074 1.21711 0.89440 1.00511 1.05368 1.21313 0.91679 0.82165 0.74291 1.90591 1.71632 1.31892 1.52160 1.45686 1.04311 1.07849 1.70994 1.19765 0.92859 0.81125 0.96344 1.21397 1.36813 1.07469 0.92160 0.95547 1.25776 0.94868 0.98004 0.99145 1.70048 1.40704 1.22949 1.24291 0.85823 0.78299 0.79575 0.80052 1.19296 1.20654 1.15494 1.17950 0.83357 1.00751 0.94350 1.21255 0.96154 1.01313 0.96272 1.21127 0.91906 1.00446 1.00046 1.20333 0.98027 0.98225 0.93224 1.20801 0.88237 1.03499 1.03621 1.21231 0.93139 0.99716 0.98574 1.21403 0.94906 1.01592 0.97440 0.92903 0.92202 0.92544 0.92308 0.91821 0.91635 0.92379 0.92576 0.91670 0.90849 0.92286 0.93266 0.91743 0.87387 0.89071 0.92258 0.94207 0.92178 0.89031 0.84184 0.89981 0.90842 0.89890 0.82408 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.13 -2.05 5.93 30.60 0.18 -1.87 16 3 C -0.12 -2.19 5.21 30.60 0.16 -2.03 16 4 C -0.12 -2.46 5.21 30.60 0.16 -2.30 16 5 C -0.11 -2.83 5.21 30.60 0.16 -2.67 16 6 C -0.09 -2.82 4.50 30.60 0.14 -2.68 16 7 C -0.13 -4.67 4.36 29.85 0.13 -4.54 16 8 C 0.51 22.05 7.53 87.66 0.66 22.70 16 9 O -0.58 -27.33 15.74 -3.05 -0.05 -27.38 16 10 N -0.56 -24.62 2.51 -635.30 -1.59 -26.21 16 11 C 0.22 9.80 3.95 85.63 0.34 10.13 16 12 C -0.54 -29.42 9.71 25.60 0.25 -29.18 16 13 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 14 C 0.02 1.15 5.47 84.65 0.46 1.62 16 15 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 16 Si 0.94 39.81 27.47 68.60 1.88 41.70 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 20 C 0.13 5.32 4.75 38.16 0.18 5.50 16 21 C -0.13 -5.42 9.55 22.39 0.21 -5.21 16 22 C -0.12 -3.85 9.69 22.25 0.22 -3.63 16 23 C -0.10 -2.71 5.88 -19.85 -0.12 -2.82 16 24 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 25 C -0.11 -3.04 9.69 22.25 0.22 -2.83 16 26 C -0.13 -4.65 9.69 22.39 0.22 -4.44 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 40 H 0.11 3.37 7.26 -2.38 -0.02 3.35 16 41 H 0.09 3.60 7.91 -2.39 -0.02 3.58 16 42 H 0.06 2.40 5.53 -2.39 -0.01 2.39 16 43 H 0.04 1.71 7.29 -2.39 -0.02 1.70 16 44 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 46 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 49 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 50 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 51 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -69.08 413.36 6.33 -62.75 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.80 Total: 31.93 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 4.99 Total: -26.93 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -1.29 Total: -82.07 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.70 kcal Total: -69.08 6.33 -62.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920970226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.312 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds