Wall clock time and date at job start Tue Mar 31 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47658 * 2 1 4 4 C 1.52998 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46977 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47262 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47249 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46933 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46946 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47064 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99901 * 354.83564 * 10 9 8 12 12 N 1.34779 * 119.99924 * 174.84084 * 10 9 8 13 13 C 1.37137 * 120.00011 * 5.67638 * 12 10 9 14 14 H 1.08004 * 120.00273 * 55.66781 * 13 12 10 15 15 C 1.38888 * 120.00163 * 235.66946 * 13 12 10 16 16 N 1.31424 * 119.99674 * 9.24133 * 15 13 12 17 17 Si 1.86798 * 120.00391 * 189.24837 * 15 13 12 18 18 H 1.48493 * 109.47482 * 89.99650 * 17 15 13 19 19 H 1.48501 * 109.46927 * 210.00055 * 17 15 13 20 20 H 1.48497 * 109.46843 * 329.99479 * 17 15 13 21 21 C 1.39785 * 119.99708 * 185.67650 * 12 10 9 22 22 C 1.38961 * 120.07695 * 175.18919 * 21 12 10 23 23 C 1.38081 * 119.92115 * 179.97438 * 22 21 12 24 24 C 1.38303 * 120.08186 * 359.97438 * 23 22 21 25 25 C 1.38314 * 120.15389 * 359.97438 * 24 23 22 26 26 C 1.38088 * 120.07763 * 0.02562 * 25 24 23 27 27 H 1.09008 * 109.46477 * 300.00044 * 1 2 3 28 28 H 1.08995 * 109.46666 * 59.99583 * 1 2 3 29 29 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46631 * 239.99718 * 2 1 3 31 31 H 1.09001 * 109.47031 * 120.00659 * 2 1 3 32 32 H 1.08998 * 109.46818 * 60.00057 * 3 2 1 33 33 H 1.08998 * 109.46946 * 300.00535 * 3 2 1 34 34 H 1.09007 * 109.46941 * 60.00491 * 4 3 2 35 35 H 1.08992 * 109.47194 * 299.99944 * 4 3 2 36 36 H 1.09000 * 109.47496 * 60.00294 * 5 4 3 37 37 H 1.09001 * 109.47637 * 300.00334 * 5 4 3 38 38 H 1.09000 * 109.46970 * 59.99550 * 6 5 4 39 39 H 1.09008 * 109.46576 * 300.00154 * 6 5 4 40 40 H 1.08998 * 109.47314 * 59.99589 * 7 6 5 41 41 H 1.09006 * 109.46643 * 299.99541 * 7 6 5 42 42 H 1.08998 * 109.47435 * 59.99689 * 8 7 6 43 43 H 1.08998 * 109.47251 * 299.99604 * 8 7 6 44 44 H 1.09000 * 109.47496 * 59.99898 * 9 8 7 45 45 H 1.09001 * 109.47637 * 299.99939 * 9 8 7 46 46 H 0.97001 * 120.00283 * 184.98362 * 16 15 13 47 47 H 1.07998 * 120.03859 * 359.70541 * 22 21 12 48 48 H 1.08007 * 119.95632 * 179.97438 * 23 22 21 49 49 H 1.07995 * 119.92309 * 179.97438 * 24 23 22 50 50 H 1.07995 * 119.95873 * 180.02562 * 25 24 23 51 51 H 1.07999 * 120.03890 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.6102 2.8848 0.0000 7 6 6.1202 4.3273 0.0000 8 6 7.6502 4.3272 0.0006 9 6 8.1603 5.7696 0.0000 10 6 9.6673 5.7696 0.0013 11 8 10.2736 4.7236 0.0971 12 7 10.3413 6.9320 -0.1040 13 6 9.6607 8.1225 -0.0950 14 1 9.0024 8.3620 0.7271 15 6 9.8179 9.0202 -1.1430 16 7 10.4703 8.6591 -2.2252 17 14 9.1022 10.7408 -1.0143 18 1 10.1081 11.6516 -0.4113 19 1 8.7414 11.2294 -2.3695 20 1 7.8880 10.7092 -0.1601 21 6 11.7342 6.9240 -0.2223 22 6 12.4222 8.1131 -0.4312 23 6 13.7981 8.1015 -0.5471 24 6 14.4915 6.9084 -0.4550 25 6 13.8100 5.7231 -0.2461 26 6 12.4341 5.7271 -0.1293 27 1 -0.3632 0.5139 0.8901 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6769 1.9562 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9338 0.9284 -0.8892 35 1 3.9331 0.9287 0.8908 36 1 3.7166 3.3992 0.8895 37 1 3.7172 3.3982 -0.8904 38 1 5.9735 2.3705 -0.8897 39 1 5.9735 2.3713 0.8903 40 1 5.7569 4.8411 0.8899 41 1 5.7569 4.8410 -0.8901 42 1 8.0140 3.8131 -0.8890 43 1 8.0132 3.8135 0.8909 44 1 7.7966 6.2841 0.8895 45 1 7.7974 6.2830 -0.8904 46 1 10.6429 9.3069 -2.9263 47 1 11.8811 9.0446 -0.5071 48 1 14.3334 9.0254 -0.7098 49 1 15.5676 6.9023 -0.5465 50 1 14.3547 4.7933 -0.1743 51 1 11.9026 4.8012 0.0334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920976048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:57 Heat of formation + Delta-G solvation = -52.298414 kcal Electronic energy + Delta-G solvation = -25747.443856 eV Core-core repulsion = 22224.089401 eV Total energy + Delta-G solvation = -3523.354455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48501 -39.06900 -37.84477 -36.83483 -36.14258 -33.82589 -33.73134 -31.40161 -31.18981 -30.01004 -27.48566 -26.94087 -24.63498 -23.34980 -22.81503 -22.06687 -21.78609 -21.49417 -20.98991 -19.40294 -17.87488 -17.43079 -17.08898 -16.85514 -16.52940 -16.13298 -15.79740 -15.30006 -14.93343 -14.89937 -14.78520 -14.64036 -14.29117 -14.01075 -13.97043 -13.79811 -13.48946 -13.31163 -13.10688 -12.96872 -12.82110 -12.70945 -12.48808 -12.38069 -12.27595 -12.09498 -12.02364 -11.86868 -11.72935 -11.67957 -11.57088 -11.35068 -11.27424 -11.06555 -10.98744 -10.55430 -9.89221 -9.53801 -8.70670 -8.12636 -6.44209 0.69626 0.81161 1.42478 1.45447 1.56354 2.01019 2.25976 2.82597 2.93673 3.36282 3.72863 4.00041 4.03266 4.12144 4.14783 4.18913 4.31175 4.31591 4.33556 4.43474 4.54891 4.55123 4.59153 4.70581 4.79369 4.83554 4.85852 4.90225 4.94931 4.98395 5.01150 5.03676 5.09841 5.11303 5.18316 5.23427 5.24875 5.25931 5.32311 5.38137 5.42701 5.43855 5.44347 5.52638 5.57393 5.60076 5.80224 5.89335 5.91057 6.06667 6.24591 6.63591 7.00342 7.45082 7.82869 8.65407 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002271 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.569005 B =12323.904185 C =13836.394239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.094 4.094 9 C -0.106 4.106 10 C 0.475 3.525 11 O -0.589 6.589 12 N -0.401 5.401 13 C -0.378 4.378 14 H 0.100 0.900 15 C 0.020 3.980 16 N -0.878 5.878 17 Si 0.980 3.020 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.251 1.251 21 C 0.151 3.849 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.166 4.166 25 C -0.120 4.120 26 C -0.220 4.220 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.274 0.726 47 H 0.116 0.884 48 H 0.132 0.868 49 H 0.142 0.858 50 H 0.135 0.865 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 -7.753 3.534 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.145 4.145 10 C 0.269 3.731 11 O -0.475 6.475 12 N -0.109 5.109 13 C -0.504 4.504 14 H 0.117 0.883 15 C -0.186 4.186 16 N -0.512 5.512 17 Si 0.802 3.198 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.175 1.175 21 C 0.054 3.946 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.185 4.185 25 C -0.138 4.138 26 C -0.240 4.240 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.134 0.866 48 H 0.150 0.850 49 H 0.160 0.840 50 H 0.153 0.847 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.092 -8.206 3.361 14.995 hybrid contribution 0.086 1.046 -0.414 1.128 sum -12.006 -7.160 2.947 14.286 Atomic orbital electron populations 1.21783 0.95509 1.01874 1.01879 1.21554 0.96221 0.96743 1.01940 1.21610 0.95029 0.96950 1.02019 1.21598 0.95632 0.96522 1.01901 1.21570 0.94466 0.97082 1.02176 1.21561 0.95946 0.96016 1.01834 1.21548 0.93135 0.97623 1.02519 1.21288 0.96217 0.94013 1.01658 1.21358 0.89444 0.99331 1.04403 1.21864 0.92235 0.82351 0.76678 1.90134 1.69780 1.33396 1.54213 1.41338 1.02815 1.06656 1.60080 1.19618 1.28785 0.95241 1.06796 0.88282 1.26389 0.95554 1.03817 0.92876 1.70158 1.38311 1.36138 1.06547 0.85124 0.79524 0.77192 0.77917 1.19544 1.20779 1.17471 1.18716 0.84603 0.94412 0.96886 1.21069 0.94261 0.97671 1.01929 1.21157 0.93262 0.98916 1.01030 1.21208 1.00320 0.92240 1.04721 1.21248 0.93481 0.98808 1.00312 1.22852 0.95798 0.99768 1.05558 0.92650 0.92748 0.92372 0.92218 0.92073 0.91965 0.92159 0.92355 0.92076 0.91684 0.92077 0.92606 0.92088 0.91078 0.91877 0.93538 0.92373 0.88452 0.89687 0.91667 0.86569 0.84968 0.84017 0.84713 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.13 -1.67 5.93 30.59 0.18 -1.48 16 3 C -0.12 -1.69 5.21 30.59 0.16 -1.54 16 4 C -0.12 -1.92 5.21 30.59 0.16 -1.76 16 5 C -0.12 -2.07 5.21 30.59 0.16 -1.91 16 6 C -0.12 -2.50 5.21 30.60 0.16 -2.34 16 7 C -0.11 -2.76 5.21 30.59 0.16 -2.60 16 8 C -0.09 -3.07 4.52 30.59 0.14 -2.93 16 9 C -0.11 -4.08 4.53 29.85 0.14 -3.95 16 10 C 0.47 23.19 7.57 87.66 0.66 23.85 16 11 O -0.59 -30.32 12.37 -3.03 -0.04 -30.36 16 12 N -0.40 -20.90 2.62 -458.89 -1.20 -22.10 16 13 C -0.38 -18.79 7.61 84.02 0.64 -18.15 16 14 H 0.10 4.63 7.85 -2.91 -0.02 4.61 16 15 C 0.02 0.96 3.49 84.91 0.30 1.26 16 16 N -0.88 -46.51 11.39 21.65 0.25 -46.27 16 17 Si 0.98 37.86 29.57 68.60 2.03 39.89 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 21 C 0.15 7.90 6.05 38.22 0.23 8.13 16 22 C -0.13 -6.33 7.87 22.41 0.18 -6.15 16 23 C -0.12 -5.19 10.04 22.25 0.22 -4.97 16 24 C -0.17 -6.30 10.04 22.30 0.22 -6.08 16 25 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 26 C -0.22 -10.88 9.06 22.41 0.20 -10.68 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 44 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.08 3.38 8.04 -2.39 -0.02 3.37 16 46 H 0.27 13.71 8.32 -92.71 -0.77 12.94 16 47 H 0.12 5.96 5.15 -2.91 -0.02 5.95 16 48 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 49 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 50 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 51 H 0.16 8.33 4.50 -64.42 -0.29 8.04 16 Total: -1.00 -60.54 404.50 6.46 -54.08 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: 0.58 Total: 41.85 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 4.85 Total: -37.08 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.96 Total: -68.37 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -60.54 6.46 -54.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920976048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.782 kcal (2) G-P(sol) polarization free energy of solvation -60.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds