Wall clock time and date at job start Tue Mar 31 2020 11:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.05829 * 2 1 4 4 C 1.54267 * 110.03541 * 238.58231 * 2 1 3 5 5 C 1.54886 * 104.19266 * 264.32780 * 4 2 1 6 6 C 1.54888 * 102.75270 * 322.05412 * 5 4 2 7 7 C 1.53881 * 110.02879 * 121.41515 * 2 1 3 8 8 H 1.08997 * 110.07206 * 359.97438 * 7 2 1 9 9 N 1.46906 * 110.02936 * 238.56940 * 7 2 1 10 10 C 1.46897 * 110.99665 * 266.29502 * 9 7 2 11 11 C 1.50700 * 109.46989 * 73.95194 * 10 9 7 12 12 C 1.38230 * 120.00068 * 264.68660 * 11 10 9 13 13 C 1.38238 * 120.00410 * 179.78468 * 12 11 10 14 14 C 1.38244 * 119.99500 * 0.44763 * 13 12 11 15 15 C 1.38228 * 119.99986 * 359.80817 * 14 13 12 16 16 C 1.38239 * 120.00429 * 359.97438 * 15 14 13 17 17 C 1.46898 * 110.99407 * 142.34614 * 9 7 2 18 18 C 1.52996 * 109.47529 * 293.95042 * 17 9 7 19 19 H 1.08998 * 109.47052 * 60.00140 * 18 17 9 20 20 O 1.42897 * 109.47164 * 300.00539 * 18 17 9 21 21 C 1.50696 * 109.47459 * 180.02562 * 18 17 9 22 22 H 1.07998 * 119.99971 * 359.97438 * 21 18 17 23 23 C 1.37876 * 119.99875 * 180.02562 * 21 18 17 24 24 N 1.31517 * 120.00025 * 179.97438 * 23 21 18 25 25 Si 1.86804 * 120.00278 * 359.97438 * 23 21 18 26 26 H 1.48492 * 109.47300 * 89.99995 * 25 23 21 27 27 H 1.48504 * 109.47157 * 210.00241 * 25 23 21 28 28 H 1.48500 * 109.46757 * 329.99575 * 25 23 21 29 29 H 1.08997 * 109.47233 * 298.58449 * 1 2 3 30 30 H 1.08999 * 109.46705 * 58.58295 * 1 2 3 31 31 H 1.09000 * 109.47272 * 178.58288 * 1 2 3 32 32 H 1.08994 * 109.47532 * 224.63593 * 3 2 1 33 33 H 1.08998 * 109.46730 * 344.63997 * 3 2 1 34 34 H 1.09006 * 109.47323 * 104.63617 * 3 2 1 35 35 H 1.09003 * 110.48478 * 145.64915 * 4 2 1 36 36 H 1.08996 * 110.59614 * 23.06380 * 4 2 1 37 37 H 1.09002 * 110.75583 * 203.74276 * 5 4 2 38 38 H 1.09006 * 110.91794 * 80.44701 * 5 4 2 39 39 H 1.08993 * 110.48511 * 279.26756 * 6 5 4 40 40 H 1.09002 * 110.48655 * 156.62204 * 6 5 4 41 41 H 1.09005 * 109.46809 * 193.94526 * 10 9 7 42 42 H 1.08998 * 109.47521 * 313.94881 * 10 9 7 43 43 H 1.08000 * 119.99825 * 359.97438 * 12 11 10 44 44 H 1.07997 * 120.00163 * 180.27386 * 13 12 11 45 45 H 1.07999 * 119.99850 * 179.83096 * 14 13 12 46 46 H 1.07999 * 120.00033 * 179.97438 * 15 14 13 47 47 H 1.07992 * 120.00208 * 180.02562 * 16 15 14 48 48 H 1.09003 * 109.47403 * 53.95597 * 17 9 7 49 49 H 1.09005 * 109.46932 * 173.95445 * 17 9 7 50 50 H 0.96700 * 113.99899 * 299.99930 * 20 18 17 51 51 H 0.96997 * 120.00367 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1901 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 1 1.2233 -1.1191 1.8332 9 7 2.9055 0.1336 2.0407 10 6 4.3203 -0.0149 1.6744 11 6 4.5672 0.6495 0.3445 12 6 4.5356 -0.0979 -0.8179 13 6 4.7576 0.5122 -2.0383 14 6 5.0205 1.8682 -2.0954 15 6 5.0574 2.6146 -0.9325 16 6 4.8309 2.0053 0.2875 17 6 2.7051 -0.1084 3.4757 18 6 1.2819 0.2944 3.8670 19 1 0.5668 -0.2973 3.2954 20 8 1.0850 1.6815 3.5857 21 6 1.0764 0.0467 5.3392 22 1 1.8804 -0.3579 5.9360 23 6 -0.1383 0.3357 5.9239 24 7 -0.3178 0.1192 7.2086 25 14 -1.5292 1.0349 4.8914 26 1 -2.3417 -0.0775 4.3370 27 1 -2.3880 1.9006 5.7390 28 1 -0.9635 1.8377 3.7775 29 1 -0.3633 0.4917 0.9024 30 1 -0.3633 0.5357 -0.8770 31 1 -0.3634 -1.0273 -0.0254 32 1 2.8662 1.5278 -0.7220 33 1 1.2485 2.1183 -0.2722 34 1 2.4233 1.6895 0.9944 35 1 2.9812 -0.3001 -1.5965 36 1 1.3079 -0.7698 -2.0271 37 1 3.0676 -2.6931 -1.3421 38 1 1.4048 -2.7680 -0.6752 39 1 3.9439 -1.6767 0.6572 40 1 2.7400 -2.8197 1.3311 41 1 4.9439 0.4537 2.4359 42 1 4.5681 -1.0739 1.6031 43 1 4.3343 -1.1580 -0.7729 44 1 4.7285 -0.0709 -2.9469 45 1 5.1967 2.3445 -3.0486 46 1 5.2632 3.6739 -0.9771 47 1 4.8593 2.5886 1.1959 48 1 2.8553 -1.1665 3.6903 49 1 3.4202 0.4833 4.0473 50 1 1.6886 2.2687 4.0610 51 1 -1.1722 0.3228 7.6201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929802488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:38 Heat of formation + Delta-G solvation = 36.046535 kcal Electronic energy + Delta-G solvation = -29749.418283 eV Core-core repulsion = 26229.894752 eV Total energy + Delta-G solvation = -3519.523530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29252 -38.25475 -36.48581 -34.85462 -32.39305 -32.19874 -31.60892 -30.70854 -28.77157 -27.20653 -26.71995 -25.81322 -24.32069 -22.85690 -22.65427 -21.58144 -20.45539 -19.53119 -17.84645 -17.34168 -17.03940 -15.96952 -15.50780 -15.26344 -14.90044 -14.75998 -14.34518 -14.05420 -13.90294 -13.72163 -13.39964 -13.27554 -13.13936 -12.92980 -12.69562 -12.53576 -12.19040 -11.87873 -11.61351 -11.50380 -11.19872 -11.12019 -10.92969 -10.89527 -10.87854 -10.80932 -10.71229 -10.29149 -10.12498 -10.06966 -9.91794 -9.79556 -9.74828 -8.96329 -8.61126 -8.54367 -8.42106 -8.20213 -7.57649 -6.11640 -4.22589 1.45194 1.49828 3.40623 3.50606 3.78717 3.81740 4.41834 4.55901 4.75301 4.84125 4.89051 4.91562 5.05964 5.08844 5.15898 5.24539 5.37748 5.48565 5.55873 5.61362 5.63042 5.64385 5.72487 5.74742 5.85755 5.87669 5.98638 6.00714 6.03560 6.10834 6.12248 6.14030 6.20300 6.22352 6.30729 6.37286 6.45480 6.48427 6.53261 6.56367 6.60192 6.64602 6.76315 6.80009 6.88603 7.08042 7.32633 7.37194 7.46569 7.61879 7.73877 8.31014 8.85427 9.15358 9.54065 10.99057 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.004765 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.920207 B = 5874.457784 C = 6179.153245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C -0.160 4.160 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.185 4.185 7 C 0.086 3.914 8 H 0.083 0.917 9 N -0.506 5.506 10 C 0.069 3.931 11 C -0.063 4.063 12 C -0.110 4.110 13 C -0.135 4.135 14 C -0.124 4.124 15 C -0.130 4.130 16 C -0.090 4.090 17 C 0.036 3.964 18 C 0.205 3.795 19 H 0.051 0.949 20 O -0.567 6.567 21 C -0.565 4.565 22 H 0.070 0.930 23 C 0.085 3.915 24 N -0.895 5.895 25 Si 0.868 3.132 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.213 1.213 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.026 0.974 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.032 0.968 49 H 0.069 0.931 50 H 0.352 0.648 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -0.001 -18.867 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 C -0.216 4.216 4 C -0.190 4.190 5 C -0.159 4.159 6 C -0.222 4.222 7 C -0.023 4.023 8 H 0.101 0.899 9 N -0.227 5.227 10 C -0.058 4.058 11 C -0.063 4.063 12 C -0.128 4.128 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.109 4.109 17 C -0.091 4.091 18 C 0.147 3.853 19 H 0.069 0.931 20 O -0.372 6.372 21 C -0.603 4.603 22 H 0.088 0.912 23 C -0.119 4.119 24 N -0.532 5.532 25 Si 0.694 3.306 26 H -0.216 1.216 27 H -0.224 1.224 28 H -0.135 1.135 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.198 0.802 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.891 0.258 -19.169 21.571 hybrid contribution -0.461 -0.551 0.297 0.777 sum 9.429 -0.293 -18.872 21.098 Atomic orbital electron populations 1.21942 0.95242 1.00613 1.01676 1.20908 0.94362 0.96537 0.92862 1.22645 0.99693 0.93562 1.05749 1.23541 1.02760 0.95158 0.97576 1.22392 1.00277 0.97347 0.95844 1.23652 1.02483 0.99102 0.97005 1.22407 0.95642 0.89707 0.94508 0.89935 1.62322 1.03465 1.51929 1.05033 1.21404 0.91344 0.99078 0.94017 1.19653 0.98100 0.93992 0.94600 1.21361 0.98200 1.01062 0.92185 1.21000 1.01769 0.95143 0.97438 1.21018 1.00920 0.94245 0.98049 1.21041 1.01488 0.99583 0.92660 1.20995 0.97956 0.94122 0.97777 1.22925 1.01454 0.99037 0.85723 1.19693 0.90117 0.80762 0.94732 0.93133 1.86678 1.60890 1.18055 1.71590 1.21527 1.00095 1.45658 0.93029 0.91202 1.24962 0.98797 0.93466 0.94697 1.69959 1.24962 1.47244 1.11027 0.87077 0.80686 0.80113 0.82712 1.21612 1.22397 1.13486 0.92007 0.93471 0.93697 0.92667 0.95489 0.87115 0.87831 0.92849 0.92336 0.91907 0.88248 0.92129 0.90381 0.92208 0.84911 0.86589 0.86801 0.86587 0.86093 0.95005 0.91233 0.80225 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.89 37.16 0.29 -1.84 16 2 C -0.05 -0.67 0.71 -153.39 -0.11 -0.78 16 3 C -0.16 -2.45 7.08 37.16 0.26 -2.19 16 4 C -0.15 -1.90 5.16 -25.07 -0.13 -2.03 16 5 C -0.12 -1.39 6.05 -24.74 -0.15 -1.54 16 6 C -0.18 -2.37 5.20 -25.07 -0.13 -2.50 16 7 C 0.09 1.33 2.36 -66.59 -0.16 1.17 16 8 H 0.08 1.50 5.47 -51.93 -0.28 1.22 16 9 N -0.51 -7.87 2.05 -226.74 -0.47 -8.34 16 10 C 0.07 0.90 4.85 -4.98 -0.02 0.87 16 11 C -0.06 -0.76 2.94 -104.62 -0.31 -1.07 16 12 C -0.11 -1.22 4.96 -39.58 -0.20 -1.42 16 13 C -0.14 -1.38 8.09 -39.58 -0.32 -1.70 16 14 C -0.12 -1.26 9.62 -39.58 -0.38 -1.64 16 15 C -0.13 -1.39 9.43 -39.58 -0.37 -1.76 16 16 C -0.09 -1.06 7.61 -39.58 -0.30 -1.36 16 17 C 0.04 0.66 4.47 -3.83 -0.02 0.65 16 18 C 0.20 4.61 2.23 -27.89 -0.06 4.54 16 19 H 0.05 1.21 5.80 -51.93 -0.30 0.91 16 20 O -0.57 -12.54 10.01 -35.23 -0.35 -12.89 16 21 C -0.57 -15.38 9.34 -34.44 -0.32 -15.70 16 22 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 23 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 24 N -0.89 -27.26 13.96 55.43 0.77 -26.48 16 25 Si 0.87 21.89 26.99 -169.99 -4.59 17.30 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.21 -5.24 5.31 56.52 0.30 -4.94 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.77 2.79 -51.93 -0.14 0.62 16 33 H 0.03 0.43 7.69 -51.93 -0.40 0.03 16 34 H 0.11 1.87 4.80 -51.93 -0.25 1.62 16 35 H 0.10 1.21 2.15 -59.89 -0.13 1.08 16 36 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.18 2.34 -51.93 -0.12 1.06 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 42 H 0.06 0.75 5.03 -51.93 -0.26 0.48 16 43 H 0.13 1.41 3.65 -52.49 -0.19 1.22 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 48 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 49 H 0.07 1.26 7.84 -51.93 -0.41 0.86 16 50 H 0.35 7.04 9.04 45.56 0.41 7.45 16 51 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -29.96 353.33 -9.00 -38.96 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.17 Total: 12.10 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.52 Total: -25.97 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.31 Total: -34.82 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.35 Total: -12.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.96 -9.00 -38.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929802488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.006 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds