Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.05829 * 2 1 4 4 C 1.54267 * 110.03541 * 238.58231 * 2 1 3 5 5 C 1.54886 * 104.19266 * 264.32780 * 4 2 1 6 6 C 1.54888 * 102.75270 * 322.05412 * 5 4 2 7 7 C 1.53881 * 110.02879 * 121.41515 * 2 1 3 8 8 H 1.08997 * 110.07206 * 359.97438 * 7 2 1 9 9 N 1.46906 * 110.02936 * 238.56940 * 7 2 1 10 10 C 1.46897 * 110.99665 * 266.29502 * 9 7 2 11 11 C 1.50700 * 109.46989 * 73.95194 * 10 9 7 12 12 C 1.38230 * 120.00068 * 264.68660 * 11 10 9 13 13 C 1.38238 * 120.00410 * 179.78468 * 12 11 10 14 14 C 1.38244 * 119.99500 * 0.44763 * 13 12 11 15 15 C 1.38228 * 119.99986 * 359.80817 * 14 13 12 16 16 C 1.38239 * 120.00429 * 359.97438 * 15 14 13 17 17 C 1.46898 * 110.99407 * 142.34614 * 9 7 2 18 18 C 1.52996 * 109.47529 * 293.95042 * 17 9 7 19 19 H 1.08998 * 109.47052 * 60.00140 * 18 17 9 20 20 O 1.42897 * 109.47164 * 300.00539 * 18 17 9 21 21 C 1.50696 * 109.47459 * 180.02562 * 18 17 9 22 22 H 1.07998 * 119.99971 * 359.97438 * 21 18 17 23 23 C 1.37876 * 119.99875 * 180.02562 * 21 18 17 24 24 N 1.31517 * 120.00025 * 179.97438 * 23 21 18 25 25 Si 1.86804 * 120.00278 * 359.97438 * 23 21 18 26 26 H 1.48492 * 109.47300 * 89.99995 * 25 23 21 27 27 H 1.48504 * 109.47157 * 210.00241 * 25 23 21 28 28 H 1.48500 * 109.46757 * 329.99575 * 25 23 21 29 29 H 1.08997 * 109.47233 * 298.58449 * 1 2 3 30 30 H 1.08999 * 109.46705 * 58.58295 * 1 2 3 31 31 H 1.09000 * 109.47272 * 178.58288 * 1 2 3 32 32 H 1.08994 * 109.47532 * 224.63593 * 3 2 1 33 33 H 1.08998 * 109.46730 * 344.63997 * 3 2 1 34 34 H 1.09006 * 109.47323 * 104.63617 * 3 2 1 35 35 H 1.09003 * 110.48478 * 145.64915 * 4 2 1 36 36 H 1.08996 * 110.59614 * 23.06380 * 4 2 1 37 37 H 1.09002 * 110.75583 * 203.74276 * 5 4 2 38 38 H 1.09006 * 110.91794 * 80.44701 * 5 4 2 39 39 H 1.08993 * 110.48511 * 279.26756 * 6 5 4 40 40 H 1.09002 * 110.48655 * 156.62204 * 6 5 4 41 41 H 1.09005 * 109.46809 * 193.94526 * 10 9 7 42 42 H 1.08998 * 109.47521 * 313.94881 * 10 9 7 43 43 H 1.08000 * 119.99825 * 359.97438 * 12 11 10 44 44 H 1.07997 * 120.00163 * 180.27386 * 13 12 11 45 45 H 1.07999 * 119.99850 * 179.83096 * 14 13 12 46 46 H 1.07999 * 120.00033 * 179.97438 * 15 14 13 47 47 H 1.07992 * 120.00208 * 180.02562 * 16 15 14 48 48 H 1.09003 * 109.47403 * 53.95597 * 17 9 7 49 49 H 1.09005 * 109.46932 * 173.95445 * 17 9 7 50 50 H 0.96700 * 113.99899 * 299.99930 * 20 18 17 51 51 H 0.96997 * 120.00367 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1901 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 1 1.2233 -1.1191 1.8332 9 7 2.9055 0.1336 2.0407 10 6 4.3203 -0.0149 1.6744 11 6 4.5672 0.6495 0.3445 12 6 4.5356 -0.0979 -0.8179 13 6 4.7576 0.5122 -2.0383 14 6 5.0205 1.8682 -2.0954 15 6 5.0574 2.6146 -0.9325 16 6 4.8309 2.0053 0.2875 17 6 2.7051 -0.1084 3.4757 18 6 1.2819 0.2944 3.8670 19 1 0.5668 -0.2973 3.2954 20 8 1.0850 1.6815 3.5857 21 6 1.0764 0.0467 5.3392 22 1 1.8804 -0.3579 5.9360 23 6 -0.1383 0.3357 5.9239 24 7 -0.3178 0.1192 7.2086 25 14 -1.5292 1.0349 4.8914 26 1 -2.3417 -0.0775 4.3370 27 1 -2.3880 1.9006 5.7390 28 1 -0.9635 1.8377 3.7775 29 1 -0.3633 0.4917 0.9024 30 1 -0.3633 0.5357 -0.8770 31 1 -0.3634 -1.0273 -0.0254 32 1 2.8662 1.5278 -0.7220 33 1 1.2485 2.1183 -0.2722 34 1 2.4233 1.6895 0.9944 35 1 2.9812 -0.3001 -1.5965 36 1 1.3079 -0.7698 -2.0271 37 1 3.0676 -2.6931 -1.3421 38 1 1.4048 -2.7680 -0.6752 39 1 3.9439 -1.6767 0.6572 40 1 2.7400 -2.8197 1.3311 41 1 4.9439 0.4537 2.4359 42 1 4.5681 -1.0739 1.6031 43 1 4.3343 -1.1580 -0.7729 44 1 4.7285 -0.0709 -2.9469 45 1 5.1967 2.3445 -3.0486 46 1 5.2632 3.6739 -0.9771 47 1 4.8593 2.5886 1.1959 48 1 2.8553 -1.1665 3.6903 49 1 3.4202 0.4833 4.0473 50 1 1.6886 2.2687 4.0610 51 1 -1.1722 0.3228 7.6201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929802488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = 18.786505 kcal Electronic energy + Delta-G solvation = -29750.166734 eV Core-core repulsion = 26229.894752 eV Total energy + Delta-G solvation = -3520.271982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33062 -39.26270 -38.05529 -36.23016 -34.39949 -33.46206 -32.65435 -31.57636 -30.38356 -28.43866 -27.93367 -27.21081 -25.64952 -24.17006 -23.52188 -22.56444 -22.03196 -20.58562 -19.37280 -19.05467 -17.97319 -17.03961 -16.87509 -16.61144 -16.41883 -16.03661 -15.69270 -15.50374 -15.22254 -14.89025 -14.75794 -14.55780 -14.31516 -14.21033 -13.85338 -13.59074 -13.52546 -13.25514 -13.10400 -12.96640 -12.71337 -12.53715 -12.39681 -12.19990 -11.98924 -11.89613 -11.79833 -11.71286 -11.58739 -11.28028 -11.18250 -11.00711 -10.90615 -10.83838 -10.79998 -10.08562 -9.42814 -9.27356 -8.81951 -8.36713 -6.49701 0.61447 0.68411 1.35529 1.41659 1.73307 2.41900 2.87450 3.02642 3.29000 3.67539 3.78394 3.94080 3.99674 4.04395 4.17869 4.29790 4.30497 4.38553 4.42470 4.47074 4.50222 4.52217 4.57737 4.66809 4.68583 4.76708 4.80783 4.91040 4.92761 4.98937 5.00930 5.06207 5.08077 5.19075 5.20846 5.25560 5.29573 5.33529 5.35383 5.49158 5.52193 5.55454 5.58592 5.68724 5.74821 5.80457 5.90873 6.08321 6.12307 6.25020 6.30316 6.37029 6.63404 7.24380 7.41724 8.77615 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.004765 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.920207 B = 5874.457784 C = 6179.153245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.153 4.153 4 C -0.148 4.148 5 C -0.115 4.115 6 C -0.181 4.181 7 C 0.081 3.919 8 H 0.049 0.951 9 N -0.505 5.505 10 C 0.069 3.931 11 C -0.074 4.074 12 C -0.115 4.115 13 C -0.136 4.136 14 C -0.125 4.125 15 C -0.136 4.136 16 C -0.104 4.104 17 C 0.050 3.950 18 C 0.216 3.784 19 H 0.039 0.961 20 O -0.569 6.569 21 C -0.563 4.563 22 H 0.037 0.963 23 C 0.033 3.967 24 N -0.940 5.940 25 Si 0.931 3.069 26 H -0.290 1.290 27 H -0.298 1.298 28 H -0.204 1.204 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.012 0.988 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.115 0.885 48 H 0.022 0.978 49 H 0.071 0.929 50 H 0.363 0.637 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 0.111 -22.471 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.210 4.210 4 C -0.184 4.184 5 C -0.153 4.153 6 C -0.219 4.219 7 C -0.027 4.027 8 H 0.067 0.933 9 N -0.227 5.227 10 C -0.058 4.058 11 C -0.075 4.075 12 C -0.133 4.133 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.154 4.154 16 C -0.122 4.122 17 C -0.078 4.078 18 C 0.158 3.842 19 H 0.057 0.943 20 O -0.375 6.375 21 C -0.601 4.601 22 H 0.056 0.944 23 C -0.166 4.166 24 N -0.579 5.579 25 Si 0.756 3.244 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.126 1.126 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.133 0.867 48 H 0.041 0.959 49 H 0.090 0.910 50 H 0.210 0.790 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.022 0.374 -22.786 25.315 hybrid contribution -0.729 -0.565 1.428 1.700 sum 10.293 -0.191 -21.358 23.710 Atomic orbital electron populations 1.21931 0.96170 1.00690 1.00558 1.20923 0.93623 0.96447 0.93764 1.22585 0.99556 0.93623 1.05212 1.23517 1.03351 0.95225 0.96348 1.22386 1.00867 0.97027 0.94983 1.23631 1.02810 0.97578 0.97844 1.22405 0.95098 0.90867 0.94353 0.93310 1.62272 1.05343 1.52184 1.02896 1.21449 0.89403 0.99888 0.95051 1.19545 0.99457 0.94227 0.94251 1.21466 0.98249 1.01353 0.92199 1.21302 1.00738 0.95439 0.97890 1.21345 0.99820 0.94385 0.98736 1.21269 1.01107 1.00500 0.92489 1.21059 0.98720 0.94192 0.98263 1.22554 0.98741 0.98313 0.88158 1.19415 0.92410 0.80907 0.91468 0.94314 1.86615 1.61535 1.17801 1.71540 1.21886 0.98857 1.44112 0.95249 0.94422 1.25739 1.01262 0.94117 0.95500 1.70075 1.25745 1.49382 1.12721 0.86106 0.77795 0.79298 0.81207 1.21734 1.22511 1.12592 0.95231 0.92247 0.93179 0.91044 0.96930 0.88748 0.86655 0.92174 0.89596 0.92247 0.86938 0.92732 0.90314 0.91292 0.84235 0.84166 0.84551 0.85254 0.86722 0.95925 0.91015 0.79003 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 7.89 71.98 0.57 -3.57 16 2 C -0.05 -1.31 0.71 -51.45 -0.04 -1.34 16 3 C -0.15 -4.49 7.08 71.98 0.51 -3.98 16 4 C -0.15 -3.19 5.16 31.67 0.16 -3.03 16 5 C -0.11 -2.29 6.05 31.88 0.19 -2.09 16 6 C -0.18 -4.32 5.20 31.67 0.16 -4.16 16 7 C 0.08 2.47 2.36 45.64 0.11 2.58 16 8 H 0.05 1.81 5.47 -2.39 -0.01 1.80 16 9 N -0.51 -15.57 2.05 -871.26 -1.79 -17.36 16 10 C 0.07 1.71 4.85 85.56 0.42 2.12 16 11 C -0.07 -1.64 2.94 -19.87 -0.06 -1.70 16 12 C -0.11 -2.16 4.96 22.27 0.11 -2.05 16 13 C -0.14 -2.20 8.09 22.27 0.18 -2.02 16 14 C -0.12 -2.05 9.62 22.27 0.21 -1.83 16 15 C -0.14 -2.54 9.43 22.27 0.21 -2.33 16 16 C -0.10 -2.28 7.61 22.27 0.17 -2.11 16 17 C 0.05 1.89 4.47 86.30 0.39 2.28 16 18 C 0.22 9.91 2.23 29.85 0.07 9.97 16 19 H 0.04 1.91 5.80 -2.39 -0.01 1.89 16 20 O -0.57 -25.14 10.01 -148.98 -1.49 -26.63 16 21 C -0.56 -31.57 9.34 25.60 0.24 -31.33 16 22 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 23 C 0.03 1.96 5.47 84.65 0.46 2.42 16 24 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 25 Si 0.93 46.38 26.99 68.60 1.85 48.23 16 26 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.20 -9.79 5.31 99.48 0.53 -9.26 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.82 2.79 -2.39 -0.01 1.81 16 33 H 0.01 0.37 7.69 -2.39 -0.02 0.35 16 34 H 0.09 3.12 4.80 -2.38 -0.01 3.11 16 35 H 0.12 2.23 2.15 -9.87 -0.02 2.21 16 36 H 0.06 1.25 7.85 -2.39 -0.02 1.23 16 37 H 0.09 1.29 7.79 -2.39 -0.02 1.27 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.11 2.40 2.34 -2.39 -0.01 2.39 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.93 7.75 -2.38 -0.02 1.92 16 42 H 0.07 1.60 5.03 -2.39 -0.01 1.58 16 43 H 0.14 2.42 3.65 -2.91 -0.01 2.41 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 48 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 49 H 0.07 2.64 7.84 -2.38 -0.02 2.62 16 50 H 0.36 14.44 9.04 -74.06 -0.67 13.77 16 51 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -65.85 353.33 3.02 -62.83 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.08 Total: 33.70 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 4.07 Total: -42.18 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.49 Total: -75.95 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.49 Total: -26.63 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.85 Total: 48.23 kcal Total: -65.85 3.02 -62.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929802488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.617 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds