Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.01744 * 2 1 4 4 C 1.54269 * 110.03072 * 121.38641 * 2 1 3 5 5 C 1.54893 * 104.19297 * 95.67746 * 4 2 1 6 6 C 1.54881 * 102.75208 * 37.94122 * 5 4 2 7 7 C 1.53878 * 110.03540 * 238.55392 * 2 1 3 8 8 H 1.09000 * 110.03057 * 359.97438 * 7 2 1 9 9 N 1.46899 * 110.03141 * 121.38185 * 7 2 1 10 10 C 1.46900 * 110.99840 * 232.17774 * 9 7 2 11 11 C 1.50705 * 109.46998 * 76.59614 * 10 9 7 12 12 C 1.38233 * 119.99528 * 263.47548 * 11 10 9 13 13 C 1.38237 * 119.99586 * 179.81166 * 12 11 10 14 14 C 1.38231 * 120.00370 * 0.41953 * 13 12 11 15 15 C 1.38238 * 119.99661 * 359.81386 * 14 13 12 16 16 C 1.38231 * 120.00030 * 83.74829 * 11 10 9 17 17 C 1.46899 * 110.99836 * 108.22455 * 9 7 2 18 18 C 1.53000 * 109.47044 * 284.06272 * 17 9 7 19 19 H 1.08991 * 109.47514 * 52.23671 * 18 17 9 20 20 O 1.42900 * 109.46988 * 292.23678 * 18 17 9 21 21 C 1.50706 * 109.46982 * 172.24135 * 18 17 9 22 22 H 1.08004 * 119.99923 * 359.97438 * 21 18 17 23 23 C 1.37869 * 120.00058 * 179.97438 * 21 18 17 24 24 N 1.31519 * 120.00389 * 179.97438 * 23 21 18 25 25 Si 1.86804 * 120.00188 * 359.97438 * 23 21 18 26 26 H 1.48503 * 109.47083 * 89.99555 * 25 23 21 27 27 H 1.48491 * 109.47303 * 210.00080 * 25 23 21 28 28 H 1.48503 * 109.46935 * 330.00081 * 25 23 21 29 29 H 1.08993 * 109.47171 * 294.29342 * 1 2 3 30 30 H 1.09000 * 109.46980 * 54.29467 * 1 2 3 31 31 H 1.09001 * 109.46758 * 174.29670 * 1 2 3 32 32 H 1.09003 * 109.47320 * 173.37156 * 3 2 1 33 33 H 1.09004 * 109.46816 * 293.36760 * 3 2 1 34 34 H 1.08997 * 109.46972 * 53.36564 * 3 2 1 35 35 H 1.08994 * 110.48835 * 337.00047 * 4 2 1 36 36 H 1.09001 * 110.48599 * 214.35043 * 4 2 1 37 37 H 1.09006 * 110.75400 * 156.25781 * 5 4 2 38 38 H 1.08999 * 110.75650 * 279.62416 * 5 4 2 39 39 H 1.09007 * 110.48961 * 80.73489 * 6 5 4 40 40 H 1.08996 * 110.49004 * 203.37762 * 6 5 4 41 41 H 1.09002 * 109.47228 * 196.59223 * 10 9 7 42 42 H 1.08997 * 109.47304 * 316.59584 * 10 9 7 43 43 H 1.07998 * 120.00491 * 359.97438 * 12 11 10 44 44 H 1.08008 * 120.00020 * 180.20876 * 13 12 11 45 45 H 1.07997 * 120.00442 * 179.78985 * 14 13 12 46 46 H 1.08000 * 120.00337 * 179.97438 * 15 14 13 47 47 H 1.07998 * 120.00174 * 359.97438 * 16 11 10 48 48 H 1.09001 * 109.47136 * 44.05903 * 17 9 7 49 49 H 1.09000 * 109.47180 * 164.06317 * 17 9 7 50 50 H 0.96704 * 114.00132 * 300.00334 * 20 18 17 51 51 H 0.96994 * 120.00247 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7548 1.2373 5 6 2.3281 -2.1898 0.7202 6 6 2.8875 -1.9411 -0.7025 7 6 2.0572 -0.7542 -1.2333 8 1 1.2230 -1.1206 -1.8317 9 7 2.9048 0.1328 -2.0413 10 6 2.4694 0.1428 -3.4442 11 6 1.2312 0.9912 -3.5799 12 6 -0.0173 0.3979 -3.5721 13 6 -1.1532 1.1764 -3.6927 14 6 -1.0403 2.5473 -3.8297 15 6 0.2085 3.1400 -3.8423 16 6 1.3443 2.3619 -3.7178 17 6 4.3195 -0.2474 -1.9317 18 6 4.8694 0.2173 -0.5818 19 1 4.2209 -0.1409 0.2176 20 8 4.9167 1.6453 -0.5528 21 6 6.2581 -0.3352 -0.3879 22 1 6.7036 -0.9562 -1.1511 23 6 6.9598 -0.0481 0.7636 24 7 8.1714 -0.5307 0.9330 25 14 6.1896 1.0265 2.0833 26 1 5.4465 0.1732 3.0451 27 1 7.2560 1.7691 2.8017 28 1 5.2537 1.9914 1.4520 29 1 -0.3633 0.4228 0.9366 30 1 -0.3633 0.5998 -0.8345 31 1 -0.3633 -1.0226 -0.1021 32 1 3.1373 1.4296 0.1186 33 1 1.7951 1.9185 -0.9434 34 1 1.6019 1.9888 0.8246 35 1 1.3061 -0.7686 2.0258 36 1 2.9811 -0.2993 1.5968 37 1 3.0676 -2.6924 1.3437 38 1 1.4031 -2.7648 0.6765 39 1 3.9441 -1.6770 -0.6562 40 1 2.7402 -2.8204 -1.3295 41 1 3.2625 0.5552 -4.0679 42 1 2.2487 -0.8758 -3.7634 43 1 -0.1055 -0.6736 -3.4692 44 1 -2.1289 0.7132 -3.6832 45 1 -1.9275 3.1552 -3.9273 46 1 0.2969 4.2110 -3.9498 47 1 2.3199 2.8250 -3.7279 48 1 4.4114 -1.3309 -2.0079 49 1 4.8854 0.2227 -2.7360 50 1 5.4769 2.0343 -1.2384 51 1 8.6652 -0.3284 1.7430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929802489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = -15.733369 kcal Electronic energy + Delta-G solvation = -29568.608546 eV Core-core repulsion = 26046.839670 eV Total energy + Delta-G solvation = -3521.768876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51057 -39.76225 -37.72666 -36.28736 -34.37005 -33.36787 -32.25496 -31.66506 -30.34447 -28.63798 -27.94298 -27.11253 -25.63793 -24.11546 -23.30739 -22.39964 -21.81129 -21.13713 -19.40741 -18.87459 -17.67341 -17.25655 -16.85867 -16.41150 -16.35114 -15.85950 -15.82318 -15.58371 -15.17091 -14.89008 -14.60048 -14.41289 -14.17365 -14.13981 -13.72366 -13.66892 -13.55292 -13.27510 -13.16181 -12.94033 -12.89859 -12.49350 -12.40902 -12.08193 -11.93542 -11.89841 -11.74494 -11.67538 -11.59102 -11.27422 -11.24139 -11.22299 -11.01841 -10.74925 -10.72219 -10.00694 -9.65625 -9.51610 -8.88035 -8.31941 -6.43326 0.57605 0.65158 1.38236 1.44803 1.75479 2.45041 2.86376 3.07737 3.30126 3.70417 3.76358 3.94023 4.06006 4.07950 4.19342 4.28337 4.28689 4.40525 4.46979 4.49109 4.52737 4.57961 4.61203 4.64987 4.72250 4.74856 4.82420 4.85614 4.92197 4.98881 5.02509 5.08291 5.12239 5.18640 5.23612 5.24606 5.28733 5.32363 5.40231 5.49774 5.54861 5.59436 5.67036 5.69651 5.73143 5.75022 5.87389 6.11319 6.17907 6.24338 6.33380 6.45693 6.70085 7.30576 7.48825 8.82528 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.005065 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.990342 B = 5526.406367 C = 5975.069732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.051 4.051 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.181 4.181 7 C 0.097 3.903 8 H 0.079 0.921 9 N -0.512 5.512 10 C 0.089 3.911 11 C -0.072 4.072 12 C -0.119 4.119 13 C -0.125 4.125 14 C -0.129 4.129 15 C -0.130 4.130 16 C -0.110 4.110 17 C 0.040 3.960 18 C 0.206 3.794 19 H 0.072 0.928 20 O -0.568 6.568 21 C -0.558 4.558 22 H 0.035 0.965 23 C 0.036 3.964 24 N -0.942 5.942 25 Si 0.920 3.080 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.198 1.198 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.122 0.878 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.359 0.641 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.886 2.627 -8.273 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.188 4.188 4 C -0.161 4.161 5 C -0.153 4.153 6 C -0.218 4.218 7 C -0.012 4.012 8 H 0.097 0.903 9 N -0.234 5.234 10 C -0.038 4.038 11 C -0.073 4.073 12 C -0.138 4.138 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.129 4.129 17 C -0.087 4.087 18 C 0.148 3.852 19 H 0.089 0.911 20 O -0.375 6.375 21 C -0.597 4.597 22 H 0.053 0.947 23 C -0.164 4.164 24 N -0.582 5.582 25 Si 0.746 3.254 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.119 1.119 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.206 0.794 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.202 3.013 -7.527 22.700 hybrid contribution 1.292 -0.660 0.082 1.453 sum -19.911 2.353 -7.446 21.387 Atomic orbital electron populations 1.21805 0.93517 1.01536 1.01458 1.21081 0.95414 0.95638 0.93029 1.21954 1.03296 0.94280 0.99304 1.22590 0.99856 0.95717 0.97971 1.22360 1.00698 0.96588 0.95633 1.23487 1.02575 0.98443 0.97330 1.22419 0.94618 0.89876 0.94262 0.90333 1.62221 1.01614 1.51597 1.07948 1.21163 0.95313 0.97567 0.89769 1.19736 0.94284 0.94164 0.99097 1.21142 0.92103 1.00032 1.00474 1.21323 0.98798 0.94137 1.00037 1.21379 0.97827 0.95296 1.00220 1.21348 0.92680 1.00408 1.00361 1.21089 0.98941 0.93482 0.99341 1.22811 0.88111 0.98605 0.99211 1.19781 0.92407 0.78948 0.94031 0.91071 1.86588 1.71462 1.21882 1.57537 1.21936 1.01777 1.32114 1.03843 0.94712 1.25674 0.94536 0.95854 1.00287 1.70082 1.13132 1.46710 1.28239 0.86279 0.79463 0.81378 0.78310 1.21461 1.23109 1.11950 0.92917 0.92690 0.92169 0.90286 0.92537 0.96385 0.90711 0.94451 0.92943 0.89771 0.89480 0.91472 0.90468 0.93738 0.85992 0.84457 0.84455 0.85098 0.86706 0.93925 0.91941 0.79390 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.17 71.98 0.59 -2.39 16 2 C -0.05 -1.48 0.72 -51.45 -0.04 -1.52 16 3 C -0.13 -4.45 7.35 71.98 0.53 -3.92 16 4 C -0.12 -3.88 5.30 31.67 0.17 -3.71 16 5 C -0.11 -3.38 6.90 31.88 0.22 -3.16 16 6 C -0.18 -5.68 4.76 31.67 0.15 -5.53 16 7 C 0.10 2.77 2.37 45.64 0.11 2.87 16 8 H 0.08 2.00 5.55 -2.39 -0.01 1.99 16 9 N -0.51 -15.46 2.34 -871.27 -2.04 -17.51 16 10 C 0.09 2.29 4.98 85.56 0.43 2.71 16 11 C -0.07 -1.71 4.93 -19.87 -0.10 -1.81 16 12 C -0.12 -2.46 8.32 22.27 0.19 -2.27 16 13 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 14 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 15 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 16 C -0.11 -2.61 9.49 22.27 0.21 -2.40 16 17 C 0.04 1.47 4.11 86.30 0.35 1.83 16 18 C 0.21 8.97 0.59 29.85 0.02 8.98 16 19 H 0.07 3.21 2.48 -2.39 -0.01 3.20 16 20 O -0.57 -24.01 7.86 -148.98 -1.17 -25.18 16 21 C -0.56 -30.42 9.22 25.60 0.24 -30.18 16 22 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 23 C 0.04 2.06 5.47 84.65 0.46 2.52 16 24 N -0.94 -58.44 13.96 21.44 0.30 -58.14 16 25 Si 0.92 45.29 26.99 68.60 1.85 47.15 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 28 H -0.20 -9.23 5.30 99.48 0.53 -8.70 16 29 H 0.05 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.05 1.30 7.55 -2.39 -0.02 1.28 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 3.11 2.92 -2.39 -0.01 3.11 16 33 H 0.06 1.91 7.11 -2.39 -0.02 1.89 16 34 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 36 H 0.04 1.42 6.30 -2.39 -0.02 1.40 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.09 3.39 3.28 -2.38 -0.01 3.38 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.97 7.56 -2.39 -0.02 1.95 16 42 H 0.04 1.07 7.76 -2.39 -0.02 1.05 16 43 H 0.12 2.26 7.45 -2.91 -0.02 2.24 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 48 H 0.04 1.62 5.61 -2.39 -0.01 1.61 16 49 H 0.06 2.25 7.59 -2.39 -0.02 2.23 16 50 H 0.36 13.76 9.04 -74.05 -0.67 13.09 16 51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -63.69 368.81 3.21 -60.49 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.08 Total: 37.74 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.19 Total: -44.54 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.74 Total: -75.65 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.17 Total: -25.18 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.15 kcal Total: -63.69 3.21 -60.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929802489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.753 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds