Wall clock time and date at job start Tue Mar 31 2020 12:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50696 * 109.46936 * 120.00172 * 2 1 3 5 5 C 1.38238 * 119.99767 * 120.00493 * 4 2 1 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46088 * 19.97908 * 8 7 6 10 10 C 1.53032 * 109.46202 * 259.99627 * 8 7 6 11 11 C 1.53120 * 109.27734 * 180.80741 * 10 8 7 12 12 C 1.53114 * 109.16201 * 57.65765 * 11 10 8 13 13 C 1.53041 * 109.27621 * 302.34271 * 12 11 10 14 14 N 1.46847 * 109.45885 * 139.94365 * 8 7 6 15 15 C 1.46894 * 111.00389 * 305.85691 * 14 8 7 16 16 C 1.53000 * 109.47590 * 170.00027 * 15 14 8 17 17 H 1.09007 * 109.46732 * 59.99585 * 16 15 14 18 18 O 1.42900 * 109.46858 * 300.00123 * 16 15 14 19 19 C 1.50697 * 109.47295 * 179.97438 * 16 15 14 20 20 H 1.07995 * 119.99878 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00005 * 179.97438 * 19 16 15 22 22 N 1.31522 * 119.99800 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00316 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46683 * 60.00225 * 23 21 19 25 25 H 1.48496 * 109.47160 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47097 * 300.00577 * 23 21 19 27 27 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 28 28 C 1.38234 * 120.00185 * 300.01899 * 4 2 1 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99831 * 1 2 3 31 31 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46741 * 240.00067 * 2 1 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.09001 * 109.47289 * 60.00403 * 3 2 1 36 36 H 1.08000 * 120.00559 * 359.97438 * 5 4 2 37 37 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.50686 * 300.74778 * 10 8 7 39 39 H 1.09002 * 109.50247 * 60.82967 * 10 8 7 40 40 H 1.09010 * 109.52230 * 177.56027 * 11 10 8 41 41 H 1.08993 * 109.52137 * 297.74791 * 11 10 8 42 42 H 1.09003 * 109.50678 * 62.28385 * 12 11 10 43 43 H 1.08998 * 109.50587 * 182.36556 * 12 11 10 44 44 H 1.08999 * 109.46108 * 179.19279 * 13 12 11 45 45 H 1.08994 * 109.46375 * 299.16765 * 13 12 11 46 46 H 1.09003 * 109.46595 * 289.99858 * 15 14 8 47 47 H 1.08997 * 109.47388 * 49.99985 * 15 14 8 48 48 H 0.96703 * 113.99784 * 299.99321 * 18 16 15 49 49 H 0.97004 * 119.99743 * 179.97438 * 22 21 19 50 50 H 1.08004 * 119.99934 * 179.72684 * 27 7 6 51 51 H 1.07999 * 119.99990 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2883 -2.4858 2.2321 7 6 2.9542 -2.0135 3.4877 8 6 3.4566 -2.7241 4.7182 9 1 4.3197 -3.3364 4.4570 10 6 2.3482 -3.6179 5.2791 11 6 2.8563 -4.3221 6.5402 12 6 3.3021 -3.2693 7.5587 13 6 4.3829 -2.3856 6.9317 14 7 3.8475 -1.7338 5.7296 15 6 4.8110 -0.7713 5.1792 16 6 5.0041 0.3797 6.1686 17 1 5.3814 -0.0126 7.1131 18 8 3.7523 1.0324 6.3900 19 6 5.9931 1.3668 5.6042 20 1 6.4396 1.1906 4.6368 21 6 6.3278 2.4948 6.3229 22 7 5.7844 2.7091 7.5012 23 14 7.5542 3.7181 5.6236 24 1 7.0415 4.2520 4.3362 25 1 7.7405 4.8358 6.5834 26 1 8.8549 3.0392 5.3950 27 6 2.1547 -0.8931 3.6146 28 6 1.6980 -0.2385 2.4860 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0878 -2.2035 0.1226 37 1 3.9089 -3.3641 2.1330 38 1 1.4797 -3.0079 5.5278 39 1 2.0687 -4.3622 4.5335 40 1 2.0560 -4.9264 6.9675 41 1 3.7006 -4.9623 6.2847 42 1 2.4487 -2.6538 7.8432 43 1 3.7040 -3.7650 8.4423 44 1 4.6923 -1.6259 7.6494 45 1 5.2415 -2.9995 6.6600 46 1 5.7658 -1.2693 5.0104 47 1 4.4338 -0.3791 4.2348 48 1 3.3571 1.4066 5.5907 49 1 6.0202 3.5025 8.0070 50 1 1.8901 -0.5268 4.5956 51 1 1.0765 0.6392 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930136379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:51 Heat of formation + Delta-G solvation = -45.847539 kcal Electronic energy + Delta-G solvation = -27986.356822 eV Core-core repulsion = 24463.282098 eV Total energy + Delta-G solvation = -3523.074724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98119 -38.37707 -35.62787 -35.29599 -32.77748 -32.01020 -31.55869 -30.62964 -28.41984 -27.98105 -27.16562 -25.12383 -23.65999 -23.03215 -22.55038 -21.30689 -20.12385 -19.75623 -19.19445 -17.03356 -16.36350 -15.58424 -15.11353 -14.76055 -14.54490 -14.51333 -14.24096 -14.09633 -13.85768 -13.60727 -13.56101 -13.38788 -13.17313 -12.92294 -12.70092 -12.60592 -12.34659 -12.19625 -11.91449 -11.67748 -11.20687 -11.16997 -11.12024 -10.92568 -10.90300 -10.81625 -10.79154 -10.62933 -10.49445 -10.42998 -10.19115 -9.97073 -9.90811 -8.90253 -8.59760 -8.50901 -8.19615 -8.03759 -7.56902 -5.96044 -4.13575 1.58475 1.71364 3.30969 3.36131 3.38181 3.99316 4.33190 4.49592 4.69230 4.82065 4.93927 5.09660 5.16983 5.19395 5.24692 5.27349 5.31912 5.41059 5.43610 5.52463 5.58419 5.63248 5.71996 5.73061 5.80890 5.86229 5.90937 5.94487 5.96703 6.06039 6.08213 6.12323 6.19082 6.25023 6.25388 6.29206 6.33354 6.39386 6.41379 6.56101 6.57052 6.69155 6.71837 6.87602 6.92705 6.96454 7.29905 7.64550 7.72426 7.84471 7.95534 8.26783 8.90080 9.50803 9.67376 11.07950 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.005357 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.344795 B = 5225.594295 C = 7780.029187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.074 4.074 8 C 0.122 3.878 9 H 0.037 0.963 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.057 3.943 14 N -0.516 5.516 15 C 0.029 3.971 16 C 0.240 3.760 17 H 0.053 0.947 18 O -0.552 6.552 19 C -0.572 4.572 20 H 0.052 0.948 21 C 0.081 3.919 22 N -0.859 5.859 23 Si 0.886 3.114 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.081 4.081 28 C -0.117 4.117 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.020 0.980 47 H 0.070 0.930 48 H 0.340 0.660 49 H 0.260 0.740 50 H 0.136 0.864 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -11.082 -10.640 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.074 4.074 8 C 0.014 3.986 9 H 0.055 0.945 10 C -0.141 4.141 11 C -0.156 4.156 12 C -0.153 4.153 13 C -0.071 4.071 14 N -0.241 5.241 15 C -0.099 4.099 16 C 0.182 3.818 17 H 0.070 0.930 18 O -0.354 6.354 19 C -0.611 4.611 20 H 0.070 0.930 21 C -0.125 4.125 22 N -0.495 5.495 23 Si 0.713 3.287 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.099 4.099 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.088 0.912 48 H 0.183 0.817 49 H 0.070 0.930 50 H 0.154 0.846 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.616 -10.900 -9.695 17.472 hybrid contribution 1.645 0.392 -1.269 2.114 sum -7.971 -10.509 -10.963 17.151 Atomic orbital electron populations 1.21850 0.94619 1.01739 1.01798 1.20087 0.95699 0.96098 0.95411 1.21865 1.01489 0.95069 1.01823 1.19777 0.98161 0.95787 0.94565 1.20863 0.99192 0.96205 0.97972 1.20928 1.00539 1.00068 0.92154 1.19750 0.97808 0.96291 0.93559 1.20522 0.96261 0.92115 0.89719 0.94545 1.21578 0.98279 0.97689 0.96585 1.21579 1.00273 0.97678 0.96105 1.21581 0.99674 0.96813 0.97253 1.22080 0.94758 0.96869 0.93411 1.61965 1.42680 1.14785 1.04632 1.23130 0.91654 0.94637 1.00445 1.19277 0.82519 0.86840 0.93139 0.92987 1.86555 1.37611 1.75884 1.35340 1.21621 1.26987 1.07661 1.04790 0.92989 1.24991 0.95260 0.97692 0.94515 1.70074 1.41154 1.26727 1.11516 0.86785 0.81904 0.80967 0.78996 1.20176 1.21204 1.20270 1.21163 0.95475 0.94116 0.99189 1.20984 1.00729 0.99924 0.91880 0.92314 0.92722 0.92752 0.90987 0.92419 0.92757 0.92153 0.86830 0.86868 0.90971 0.92258 0.92217 0.92711 0.90973 0.92149 0.89541 0.96013 0.96143 0.91151 0.81701 0.93033 0.84582 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 37.16 0.33 -0.99 16 2 C -0.05 -0.58 3.09 -91.77 -0.28 -0.86 16 3 C -0.15 -1.55 9.01 37.16 0.33 -1.22 16 4 C -0.08 -1.06 4.78 -104.63 -0.50 -1.56 16 5 C -0.12 -1.60 9.67 -39.58 -0.38 -1.99 16 6 C -0.12 -1.63 9.67 -39.58 -0.38 -2.02 16 7 C -0.07 -1.11 3.60 -104.62 -0.38 -1.49 16 8 C 0.12 1.87 2.04 -68.87 -0.14 1.73 16 9 H 0.04 0.57 8.00 -51.93 -0.42 0.16 16 10 C -0.10 -1.36 5.35 -26.65 -0.14 -1.50 16 11 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 12 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 13 C 0.06 0.97 5.29 -3.83 -0.02 0.95 16 14 N -0.52 -9.21 3.73 -228.08 -0.85 -10.06 16 15 C 0.03 0.60 4.16 -3.83 -0.02 0.58 16 16 C 0.24 6.06 2.70 -27.88 -0.08 5.99 16 17 H 0.05 1.45 6.43 -51.92 -0.33 1.11 16 18 O -0.55 -14.22 12.60 -35.23 -0.44 -14.66 16 19 C -0.57 -15.83 8.76 -34.44 -0.30 -16.13 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.08 2.29 5.40 -17.82 -0.10 2.20 16 22 N -0.86 -25.46 12.84 55.43 0.71 -24.75 16 23 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.08 -1.25 8.06 -39.58 -0.32 -1.57 16 28 C -0.12 -1.63 8.71 -39.58 -0.34 -1.98 16 29 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 36 H 0.11 1.23 7.95 -52.49 -0.42 0.81 16 37 H 0.11 1.39 8.04 -52.49 -0.42 0.97 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.70 6.21 -51.93 -0.32 1.38 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.07 1.50 5.76 -51.93 -0.30 1.20 16 48 H 0.34 8.03 9.04 45.56 0.41 8.44 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.14 2.28 7.73 -52.48 -0.41 1.87 16 51 H 0.12 1.50 7.10 -52.49 -0.37 1.13 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -29.72 394.07 -11.07 -40.79 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.37 Total: 9.62 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -3.04 Total: -23.25 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.14 Total: -34.82 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.44 Total: -14.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.72 -11.07 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930136379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.058 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds