Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50696 * 109.46936 * 120.00172 * 2 1 3 5 5 C 1.38238 * 119.99767 * 120.00493 * 4 2 1 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46088 * 19.97908 * 8 7 6 10 10 C 1.53032 * 109.46202 * 259.99627 * 8 7 6 11 11 C 1.53120 * 109.27734 * 180.80741 * 10 8 7 12 12 C 1.53114 * 109.16201 * 57.65765 * 11 10 8 13 13 C 1.53041 * 109.27621 * 302.34271 * 12 11 10 14 14 N 1.46847 * 109.45885 * 139.94365 * 8 7 6 15 15 C 1.46894 * 111.00389 * 305.85691 * 14 8 7 16 16 C 1.53000 * 109.47590 * 170.00027 * 15 14 8 17 17 H 1.09007 * 109.46732 * 59.99585 * 16 15 14 18 18 O 1.42900 * 109.46858 * 300.00123 * 16 15 14 19 19 C 1.50697 * 109.47295 * 179.97438 * 16 15 14 20 20 H 1.07995 * 119.99878 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00005 * 179.97438 * 19 16 15 22 22 N 1.31522 * 119.99800 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00316 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46683 * 60.00225 * 23 21 19 25 25 H 1.48496 * 109.47160 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47097 * 300.00577 * 23 21 19 27 27 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 28 28 C 1.38234 * 120.00185 * 300.01899 * 4 2 1 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99831 * 1 2 3 31 31 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46741 * 240.00067 * 2 1 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.09001 * 109.47289 * 60.00403 * 3 2 1 36 36 H 1.08000 * 120.00559 * 359.97438 * 5 4 2 37 37 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.50686 * 300.74778 * 10 8 7 39 39 H 1.09002 * 109.50247 * 60.82967 * 10 8 7 40 40 H 1.09010 * 109.52230 * 177.56027 * 11 10 8 41 41 H 1.08993 * 109.52137 * 297.74791 * 11 10 8 42 42 H 1.09003 * 109.50678 * 62.28385 * 12 11 10 43 43 H 1.08998 * 109.50587 * 182.36556 * 12 11 10 44 44 H 1.08999 * 109.46108 * 179.19279 * 13 12 11 45 45 H 1.08994 * 109.46375 * 299.16765 * 13 12 11 46 46 H 1.09003 * 109.46595 * 289.99858 * 15 14 8 47 47 H 1.08997 * 109.47388 * 49.99985 * 15 14 8 48 48 H 0.96703 * 113.99784 * 299.99321 * 18 16 15 49 49 H 0.97004 * 119.99743 * 179.97438 * 22 21 19 50 50 H 1.08004 * 119.99934 * 179.72684 * 27 7 6 51 51 H 1.07999 * 119.99990 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2883 -2.4858 2.2321 7 6 2.9542 -2.0135 3.4877 8 6 3.4566 -2.7241 4.7182 9 1 4.3197 -3.3364 4.4570 10 6 2.3482 -3.6179 5.2791 11 6 2.8563 -4.3221 6.5402 12 6 3.3021 -3.2693 7.5587 13 6 4.3829 -2.3856 6.9317 14 7 3.8475 -1.7338 5.7296 15 6 4.8110 -0.7713 5.1792 16 6 5.0041 0.3797 6.1686 17 1 5.3814 -0.0126 7.1131 18 8 3.7523 1.0324 6.3900 19 6 5.9931 1.3668 5.6042 20 1 6.4396 1.1906 4.6368 21 6 6.3278 2.4948 6.3229 22 7 5.7844 2.7091 7.5012 23 14 7.5542 3.7181 5.6236 24 1 7.0415 4.2520 4.3362 25 1 7.7405 4.8358 6.5834 26 1 8.8549 3.0392 5.3950 27 6 2.1547 -0.8931 3.6146 28 6 1.6980 -0.2385 2.4860 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0878 -2.2035 0.1226 37 1 3.9089 -3.3641 2.1330 38 1 1.4797 -3.0079 5.5278 39 1 2.0687 -4.3622 4.5335 40 1 2.0560 -4.9264 6.9675 41 1 3.7006 -4.9623 6.2847 42 1 2.4487 -2.6538 7.8432 43 1 3.7040 -3.7650 8.4423 44 1 4.6923 -1.6259 7.6494 45 1 5.2415 -2.9995 6.6600 46 1 5.7658 -1.2693 5.0104 47 1 4.4338 -0.3791 4.2348 48 1 3.3571 1.4066 5.5907 49 1 6.0202 3.5025 8.0070 50 1 1.8901 -0.5268 4.5956 51 1 1.0765 0.6392 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930136379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = -62.315017 kcal Electronic energy + Delta-G solvation = -27987.070905 eV Core-core repulsion = 24463.282098 eV Total energy + Delta-G solvation = -3523.788807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16438 -39.57146 -37.51046 -36.27149 -34.32437 -34.06940 -32.71581 -31.70920 -30.00433 -29.37110 -27.94627 -26.90088 -24.76618 -24.61158 -23.64786 -22.41143 -21.88419 -20.73592 -20.42673 -19.05178 -17.49773 -16.85660 -16.67314 -16.54761 -16.02295 -15.86018 -15.64985 -15.40180 -15.06822 -14.97083 -14.59191 -14.50405 -14.36079 -14.28552 -14.03938 -13.88252 -13.66249 -13.23368 -13.12028 -12.90092 -12.82243 -12.79347 -12.72051 -12.40437 -12.20802 -12.06645 -12.04133 -11.95089 -11.67560 -11.59238 -11.44092 -11.39359 -11.13255 -10.88030 -10.66243 -10.06890 -9.68775 -9.28168 -9.07158 -8.12953 -6.38550 0.50625 0.62424 1.38235 1.39768 1.47993 2.37427 2.88044 3.06092 3.13217 3.71171 3.85580 3.94378 3.97117 4.07551 4.18526 4.20803 4.27788 4.33117 4.34658 4.37524 4.42504 4.53070 4.59122 4.60849 4.67662 4.69470 4.79029 4.83592 4.88572 4.92696 5.01324 5.03624 5.04405 5.05813 5.11860 5.13706 5.23124 5.23866 5.29730 5.33607 5.39824 5.41912 5.50161 5.59913 5.63475 5.76028 5.83003 5.84203 6.05479 6.21509 6.26670 6.41543 6.74154 7.34721 7.61119 8.91056 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.005357 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.344795 B = 5225.594295 C = 7780.029187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.088 4.088 8 C 0.123 3.877 9 H 0.037 0.963 10 C -0.098 4.098 11 C -0.112 4.112 12 C -0.109 4.109 13 C 0.055 3.945 14 N -0.521 5.521 15 C 0.053 3.947 16 C 0.244 3.756 17 H 0.019 0.981 18 O -0.564 6.564 19 C -0.589 4.589 20 H 0.051 0.949 21 C 0.031 3.969 22 N -0.897 5.897 23 Si 0.955 3.045 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.270 1.270 27 C -0.097 4.097 28 C -0.125 4.125 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.025 0.975 46 H 0.009 0.991 47 H 0.068 0.932 48 H 0.348 0.652 49 H 0.261 0.739 50 H 0.113 0.887 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -12.227 -12.949 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.089 4.089 8 C 0.015 3.985 9 H 0.055 0.945 10 C -0.136 4.136 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.073 4.073 14 N -0.246 5.246 15 C -0.075 4.075 16 C 0.186 3.814 17 H 0.037 0.963 18 O -0.367 6.367 19 C -0.627 4.627 20 H 0.070 0.930 21 C -0.172 4.172 22 N -0.534 5.534 23 Si 0.779 3.221 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.195 1.195 27 C -0.116 4.116 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.086 0.914 48 H 0.191 0.809 49 H 0.070 0.930 50 H 0.132 0.868 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.914 -12.061 -12.013 19.700 hybrid contribution 1.703 0.743 -0.560 1.940 sum -8.212 -11.319 -12.573 18.805 Atomic orbital electron populations 1.21826 0.93581 1.02012 1.02313 1.20141 0.96522 0.95702 0.94726 1.21863 1.00654 0.95415 1.02292 1.20082 0.97526 0.95763 0.94934 1.21204 0.98416 0.95838 0.98882 1.21158 1.00543 1.00666 0.91785 1.19792 0.98411 0.96563 0.94114 1.20613 0.96969 0.91634 0.89259 0.94483 1.21561 0.96917 0.97559 0.97549 1.21563 1.01387 0.97082 0.94948 1.21542 0.98032 0.96731 0.98387 1.22075 0.96271 0.96344 0.92571 1.61886 1.41355 1.15745 1.05572 1.22639 0.91932 0.94024 0.98926 1.19086 0.81914 0.87884 0.92510 0.96309 1.86502 1.37782 1.76292 1.36102 1.21984 1.27475 1.08428 1.04795 0.93036 1.25821 0.97052 0.99624 0.94708 1.70212 1.42804 1.27440 1.12914 0.85690 0.79499 0.78442 0.78428 1.19315 1.20727 1.19476 1.21038 0.96774 0.95046 0.98716 1.21097 1.00945 1.00118 0.92149 0.92999 0.91056 0.92599 0.89479 0.93675 0.90852 0.93174 0.84284 0.85214 0.92041 0.90137 0.89789 0.91700 0.92246 0.90335 0.93130 0.95640 0.97235 0.91362 0.80861 0.92998 0.86845 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 2 C -0.05 -0.99 3.09 -11.54 -0.04 -1.03 16 3 C -0.14 -2.87 9.01 71.98 0.65 -2.22 16 4 C -0.08 -2.01 4.78 -19.87 -0.09 -2.10 16 5 C -0.13 -2.96 9.67 22.27 0.22 -2.74 16 6 C -0.12 -3.19 9.67 22.27 0.22 -2.98 16 7 C -0.09 -2.63 3.60 -19.86 -0.07 -2.70 16 8 C 0.12 3.71 2.04 44.19 0.09 3.80 16 9 H 0.04 1.12 8.00 -2.39 -0.02 1.10 16 10 C -0.10 -2.42 5.35 30.65 0.16 -2.26 16 11 C -0.11 -2.50 6.00 30.67 0.18 -2.31 16 12 C -0.11 -3.00 6.09 30.65 0.19 -2.82 16 13 C 0.06 1.96 5.29 86.33 0.46 2.41 16 14 N -0.52 -19.17 3.73 -875.51 -3.26 -22.43 16 15 C 0.05 2.30 4.16 86.30 0.36 2.66 16 16 C 0.24 12.91 2.70 29.85 0.08 12.99 16 17 H 0.02 1.13 6.43 -2.38 -0.02 1.12 16 18 O -0.56 -30.43 12.60 -148.98 -1.88 -32.31 16 19 C -0.59 -33.42 8.76 25.60 0.22 -33.19 16 20 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 21 C 0.03 1.75 5.40 84.65 0.46 2.21 16 22 N -0.90 -54.58 12.84 21.45 0.28 -54.30 16 23 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.10 -3.06 8.06 22.27 0.18 -2.89 16 28 C -0.13 -3.48 8.71 22.27 0.19 -3.29 16 29 H 0.05 0.92 7.39 -2.39 -0.02 0.90 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.41 7.88 -2.39 -0.02 1.39 16 33 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.08 7.39 -2.39 -0.02 1.06 16 36 H 0.14 2.53 7.95 -2.91 -0.02 2.51 16 37 H 0.13 2.87 8.04 -2.91 -0.02 2.84 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 2.13 6.21 -2.39 -0.01 2.12 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 47 H 0.07 2.99 5.76 -2.39 -0.01 2.97 16 48 H 0.35 17.21 9.04 -74.05 -0.67 16.54 16 49 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.11 4.02 7.73 -2.91 -0.02 4.00 16 51 H 0.12 3.17 7.10 -2.91 -0.02 3.15 16 Total: -1.00 -65.38 394.07 1.48 -63.90 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.22 Total: 36.96 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.10 Total: -38.12 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -2.99 Total: -76.73 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.88 Total: -32.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.38 1.48 -63.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930136379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.587 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds