Wall clock time and date at job start Tue Mar 31 2020 12:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.53000 * 109.46950 * 119.99542 * 2 1 3 5 5 C 1.50707 * 109.46869 * 65.00628 * 4 2 1 6 6 C 1.38229 * 120.00247 * 89.99887 * 5 4 2 7 7 C 1.38233 * 119.99850 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00189 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99918 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47733 * 339.99781 * 9 8 7 11 11 N 1.46904 * 109.47135 * 219.99932 * 9 8 7 12 12 C 1.46896 * 111.00158 * 157.09315 * 11 9 8 13 13 C 1.53002 * 109.47351 * 184.62201 * 12 11 9 14 14 H 1.09000 * 109.46611 * 60.00391 * 13 12 11 15 15 O 1.42896 * 109.47249 * 300.00170 * 13 12 11 16 16 C 1.50701 * 109.47052 * 180.02562 * 13 12 11 17 17 H 1.07997 * 119.99921 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99626 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00133 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99888 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47070 * 59.99789 * 20 18 16 22 22 H 1.48501 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47541 * 299.99839 * 20 18 16 24 24 C 1.52999 * 109.47469 * 100.00190 * 9 8 7 25 25 C 1.52995 * 117.50044 * 228.22168 * 24 9 8 26 26 C 1.53000 * 60.00389 * 107.48779 * 25 24 9 27 27 C 1.38235 * 120.00056 * 0.25696 * 8 7 6 28 28 C 1.38234 * 119.99762 * 359.49012 * 27 8 7 29 29 H 1.08998 * 109.47000 * 300.00329 * 1 2 3 30 30 H 1.09001 * 109.46662 * 60.00132 * 1 2 3 31 31 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47180 * 240.00153 * 2 1 3 33 33 H 1.09007 * 109.46734 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47353 * 299.99445 * 3 2 1 35 35 H 1.08998 * 109.47560 * 60.00014 * 3 2 1 36 36 H 1.08997 * 109.47373 * 305.00410 * 4 2 1 37 37 H 1.09007 * 109.47174 * 184.99945 * 4 2 1 38 38 H 1.08005 * 119.99939 * 359.97438 * 6 5 4 39 39 H 1.08006 * 119.99866 * 179.97438 * 7 6 5 40 40 H 1.00900 * 110.99851 * 33.14022 * 11 9 8 41 41 H 1.08998 * 109.47275 * 304.62321 * 12 11 9 42 42 H 1.08999 * 109.47094 * 64.62267 * 12 11 9 43 43 H 0.96702 * 114.00257 * 299.99771 * 15 13 12 44 44 H 0.97005 * 120.00387 * 180.02562 * 19 18 16 45 45 H 1.09002 * 115.56002 * 82.52344 * 24 9 8 46 46 H 1.09005 * 117.49613 * 214.97544 * 25 24 9 47 47 H 1.08999 * 117.50201 * 359.97438 * 25 24 9 48 48 H 1.08999 * 117.49672 * 252.51738 * 26 25 24 49 49 H 1.08997 * 117.49974 * 107.48503 * 26 25 24 50 50 H 1.07994 * 120.00031 * 179.72627 * 27 8 7 51 51 H 1.07999 * 120.00419 * 180.22691 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 6 2.4815 -3.0966 0.5952 7 6 2.1155 -4.4284 0.5393 8 6 0.9098 -4.8371 1.0778 9 6 0.5106 -6.2889 1.0164 10 1 1.0821 -6.7902 0.2352 11 7 -0.9236 -6.3901 0.7152 12 6 -1.2462 -7.6947 0.1220 13 6 -2.7214 -7.7202 -0.2829 14 1 -2.9116 -6.9326 -1.0121 15 8 -3.5361 -7.5074 0.8716 16 6 -3.0525 -9.0588 -0.8909 17 1 -2.2871 -9.8155 -0.9799 18 6 -4.3322 -9.3170 -1.3344 19 7 -5.2640 -8.3953 -1.2263 20 14 -4.7424 -10.9759 -2.0886 21 1 -4.4836 -12.0490 -1.0951 22 1 -6.1743 -11.0006 -2.4815 23 1 -3.8956 -11.1974 -3.2882 24 6 0.7968 -6.9540 2.3642 25 6 1.5451 -8.2884 2.3488 26 6 2.2545 -7.0190 2.8246 27 6 0.0674 -3.9130 1.6673 28 6 0.4357 -2.5820 1.7278 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2953 38 1 3.4234 -2.7772 0.1741 39 1 2.7718 -5.1497 0.0750 40 1 -1.2210 -5.6362 0.1141 41 1 -0.6249 -7.8571 -0.7587 42 1 -1.0559 -8.4824 0.8510 43 1 -3.4187 -8.1724 1.5638 44 1 -6.1645 -8.5770 -1.5380 45 1 0.0331 -6.8140 3.1293 46 1 1.2738 -9.0263 3.1038 47 1 1.8333 -8.6927 1.3785 48 1 3.0095 -6.5879 2.1672 49 1 2.4497 -6.9217 3.8925 50 1 -0.8766 -4.2316 2.0840 51 1 -0.2206 -1.8606 2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930236672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:00 Heat of formation + Delta-G solvation = -25.824044 kcal Electronic energy + Delta-G solvation = -26555.735007 eV Core-core repulsion = 23033.528567 eV Total energy + Delta-G solvation = -3522.206440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.89360 -37.99844 -36.15031 -35.98856 -33.88448 -32.05712 -31.49288 -30.84908 -28.59016 -27.33213 -26.81177 -24.86568 -23.50860 -22.61089 -22.23610 -21.46552 -20.45166 -20.17114 -19.58179 -16.91065 -16.44420 -15.83532 -15.54278 -15.29991 -14.79369 -14.58012 -14.50731 -14.44648 -14.29402 -13.73727 -13.62181 -13.32949 -13.23066 -12.97332 -12.52508 -12.47083 -12.33107 -12.14148 -12.07214 -11.71221 -11.43594 -11.28703 -11.13974 -11.05218 -10.90260 -10.89601 -10.82380 -10.78471 -10.74395 -10.65148 -10.17318 -10.04136 -9.75688 -8.96135 -8.79208 -8.55557 -8.42623 -8.02395 -7.80035 -5.98151 -4.16400 1.40082 1.51759 3.29891 3.35258 3.36860 3.79070 3.97751 4.36165 4.53456 4.60020 4.64661 4.77216 4.90117 4.97727 5.06052 5.10307 5.13988 5.26664 5.28428 5.29632 5.38750 5.43497 5.47386 5.54863 5.62504 5.65114 5.68638 5.71127 5.73424 5.83729 5.87699 5.91104 6.00697 6.12477 6.12843 6.15446 6.19535 6.21765 6.24317 6.30858 6.42491 6.53018 6.54514 6.68758 6.77688 6.89815 7.11162 7.63342 7.72468 7.87371 7.97544 8.23493 8.87219 9.48626 9.64954 11.05965 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.002891 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.733666 B = 9683.156308 C =11094.875946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.078 4.078 9 C 0.155 3.845 10 H 0.043 0.957 11 N -0.670 5.670 12 C 0.037 3.963 13 C 0.234 3.766 14 H 0.050 0.950 15 O -0.555 6.555 16 C -0.573 4.573 17 H 0.054 0.946 18 C 0.080 3.920 19 N -0.859 5.859 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.122 4.122 25 C -0.181 4.181 26 C -0.181 4.181 27 C -0.092 4.092 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.340 0.660 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.343 0.657 44 H 0.260 0.740 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.134 0.866 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.015 14.175 5.920 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.079 4.079 9 C 0.045 3.955 10 H 0.061 0.939 11 N -0.301 5.301 12 C -0.092 4.092 13 C 0.176 3.824 14 H 0.068 0.932 15 O -0.357 6.357 16 C -0.611 4.611 17 H 0.072 0.928 18 C -0.127 4.127 19 N -0.494 5.494 20 Si 0.716 3.284 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.141 4.141 25 C -0.218 4.218 26 C -0.219 4.219 27 C -0.111 4.111 28 C -0.136 4.136 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.038 0.962 42 H 0.082 0.918 43 H 0.187 0.813 44 H 0.070 0.930 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.152 0.848 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.434 14.564 6.149 22.804 hybrid contribution 0.390 -1.475 -1.139 1.904 sum 16.824 13.088 5.010 21.896 Atomic orbital electron populations 1.21930 0.94941 1.02591 1.01438 1.21083 0.96342 0.95601 0.97954 1.21856 1.00746 0.96074 1.01778 1.20657 1.00744 0.91454 0.98300 1.19791 0.94930 0.95131 0.98736 1.20877 0.99532 0.92930 1.00646 1.20968 0.96369 0.95765 1.00095 1.19900 0.94561 0.95157 0.98259 1.19984 0.90517 0.90376 0.94654 0.93910 1.60518 1.12453 1.05697 1.51451 1.22924 1.00771 0.89362 0.96134 1.19305 0.82398 0.95966 0.84705 0.93216 1.86543 1.67431 1.52872 1.28829 1.21595 0.95931 1.00476 1.43129 0.92813 1.25023 0.96440 0.96548 0.94649 1.70069 1.02295 1.32998 1.44081 0.86744 0.77322 0.84595 0.79727 1.20146 1.21207 1.20252 1.22217 0.94265 0.99017 0.98618 1.22987 1.04766 0.91310 1.02691 1.22893 0.95724 1.02206 1.01075 1.21142 0.99829 0.92280 0.97806 1.21048 0.96120 0.95951 1.00451 0.92819 0.92939 0.91771 0.91195 0.92849 0.92685 0.92710 0.91186 0.91370 0.86676 0.86723 0.84157 0.96192 0.91822 0.81333 0.92968 0.87106 0.88989 0.89200 0.89298 0.89216 0.84843 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.76 37.16 0.33 -1.04 16 2 C -0.09 -0.76 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 4 C -0.07 -0.63 4.84 -27.88 -0.13 -0.77 16 5 C -0.09 -0.92 4.71 -104.62 -0.49 -1.41 16 6 C -0.12 -1.34 9.70 -39.59 -0.38 -1.72 16 7 C -0.11 -1.38 9.44 -39.59 -0.37 -1.75 16 8 C -0.08 -1.05 4.45 -104.63 -0.47 -1.52 16 9 C 0.15 2.28 2.41 -68.86 -0.17 2.12 16 10 H 0.04 0.66 7.41 -51.93 -0.38 0.28 16 11 N -0.67 -11.78 5.56 -107.95 -0.60 -12.38 16 12 C 0.04 0.75 5.13 -3.83 -0.02 0.73 16 13 C 0.23 5.91 2.98 -27.88 -0.08 5.83 16 14 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 15 O -0.56 -14.39 12.59 -35.23 -0.44 -14.84 16 16 C -0.57 -15.74 8.76 -34.44 -0.30 -16.04 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 19 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.12 -1.70 5.14 -90.62 -0.47 -2.16 16 25 C -0.18 -2.30 10.18 -26.73 -0.27 -2.58 16 26 C -0.18 -2.13 9.95 -26.73 -0.27 -2.40 16 27 C -0.09 -1.23 9.05 -39.58 -0.36 -1.59 16 28 C -0.12 -1.37 7.97 -39.58 -0.32 -1.69 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.67 6.27 -51.93 -0.33 0.34 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.11 1.26 8.04 -52.48 -0.42 0.84 16 40 H 0.34 6.15 8.00 -39.29 -0.31 5.84 16 41 H 0.02 0.41 7.95 -51.93 -0.41 0.00 16 42 H 0.06 1.31 8.02 -51.93 -0.42 0.89 16 43 H 0.34 8.10 9.04 45.56 0.41 8.52 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 48 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.13 1.90 7.71 -52.49 -0.40 1.50 16 51 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 410.97 15.07 6.19 6.19 Total: -1.00 -29.53 410.97 -11.50 -41.03 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.55 Total: 14.10 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.79 Total: -25.53 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.11 Total: -37.20 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.44 Total: -14.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.53 -11.50 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930236672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.211 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds