Wall clock time and date at job start Tue Mar 31 2020 12:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.53000 * 109.46950 * 119.99542 * 2 1 3 5 5 C 1.50707 * 109.46869 * 65.00628 * 4 2 1 6 6 C 1.38229 * 120.00247 * 89.99887 * 5 4 2 7 7 C 1.38233 * 119.99850 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00189 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99918 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47733 * 339.99781 * 9 8 7 11 11 N 1.46904 * 109.47135 * 219.99932 * 9 8 7 12 12 C 1.46896 * 111.00158 * 157.09315 * 11 9 8 13 13 C 1.53002 * 109.47351 * 184.62201 * 12 11 9 14 14 H 1.09000 * 109.46611 * 60.00391 * 13 12 11 15 15 O 1.42896 * 109.47249 * 300.00170 * 13 12 11 16 16 C 1.50701 * 109.47052 * 180.02562 * 13 12 11 17 17 H 1.07997 * 119.99921 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99626 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00133 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99888 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47070 * 59.99789 * 20 18 16 22 22 H 1.48501 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47541 * 299.99839 * 20 18 16 24 24 C 1.52999 * 109.47469 * 100.00190 * 9 8 7 25 25 C 1.52995 * 117.50044 * 228.22168 * 24 9 8 26 26 C 1.53000 * 60.00389 * 107.48779 * 25 24 9 27 27 C 1.38235 * 120.00056 * 0.25696 * 8 7 6 28 28 C 1.38234 * 119.99762 * 359.49012 * 27 8 7 29 29 H 1.08998 * 109.47000 * 300.00329 * 1 2 3 30 30 H 1.09001 * 109.46662 * 60.00132 * 1 2 3 31 31 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47180 * 240.00153 * 2 1 3 33 33 H 1.09007 * 109.46734 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47353 * 299.99445 * 3 2 1 35 35 H 1.08998 * 109.47560 * 60.00014 * 3 2 1 36 36 H 1.08997 * 109.47373 * 305.00410 * 4 2 1 37 37 H 1.09007 * 109.47174 * 184.99945 * 4 2 1 38 38 H 1.08005 * 119.99939 * 359.97438 * 6 5 4 39 39 H 1.08006 * 119.99866 * 179.97438 * 7 6 5 40 40 H 1.00900 * 110.99851 * 33.14022 * 11 9 8 41 41 H 1.08998 * 109.47275 * 304.62321 * 12 11 9 42 42 H 1.08999 * 109.47094 * 64.62267 * 12 11 9 43 43 H 0.96702 * 114.00257 * 299.99771 * 15 13 12 44 44 H 0.97005 * 120.00387 * 180.02562 * 19 18 16 45 45 H 1.09002 * 115.56002 * 82.52344 * 24 9 8 46 46 H 1.09005 * 117.49613 * 214.97544 * 25 24 9 47 47 H 1.08999 * 117.50201 * 359.97438 * 25 24 9 48 48 H 1.08999 * 117.49672 * 252.51738 * 26 25 24 49 49 H 1.08997 * 117.49974 * 107.48503 * 26 25 24 50 50 H 1.07994 * 120.00031 * 179.72627 * 27 8 7 51 51 H 1.07999 * 120.00419 * 180.22691 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 6 2.4815 -3.0966 0.5952 7 6 2.1155 -4.4284 0.5393 8 6 0.9098 -4.8371 1.0778 9 6 0.5106 -6.2889 1.0164 10 1 1.0821 -6.7902 0.2352 11 7 -0.9236 -6.3901 0.7152 12 6 -1.2462 -7.6947 0.1220 13 6 -2.7214 -7.7202 -0.2829 14 1 -2.9116 -6.9326 -1.0121 15 8 -3.5361 -7.5074 0.8716 16 6 -3.0525 -9.0588 -0.8909 17 1 -2.2871 -9.8155 -0.9799 18 6 -4.3322 -9.3170 -1.3344 19 7 -5.2640 -8.3953 -1.2263 20 14 -4.7424 -10.9759 -2.0886 21 1 -4.4836 -12.0490 -1.0951 22 1 -6.1743 -11.0006 -2.4815 23 1 -3.8956 -11.1974 -3.2882 24 6 0.7968 -6.9540 2.3642 25 6 1.5451 -8.2884 2.3488 26 6 2.2545 -7.0190 2.8246 27 6 0.0674 -3.9130 1.6673 28 6 0.4357 -2.5820 1.7278 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2953 38 1 3.4234 -2.7772 0.1741 39 1 2.7718 -5.1497 0.0750 40 1 -1.2210 -5.6362 0.1141 41 1 -0.6249 -7.8571 -0.7587 42 1 -1.0559 -8.4824 0.8510 43 1 -3.4187 -8.1724 1.5638 44 1 -6.1645 -8.5770 -1.5380 45 1 0.0331 -6.8140 3.1293 46 1 1.2738 -9.0263 3.1038 47 1 1.8333 -8.6927 1.3785 48 1 3.0095 -6.5879 2.1672 49 1 2.4497 -6.9217 3.8925 50 1 -0.8766 -4.2316 2.0840 51 1 -0.2206 -1.8606 2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930236672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:59 Heat of formation + Delta-G solvation = -41.848804 kcal Electronic energy + Delta-G solvation = -26556.429893 eV Core-core repulsion = 23033.528567 eV Total energy + Delta-G solvation = -3522.901326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87183 -39.08244 -37.79921 -36.91602 -35.32648 -34.20694 -32.57583 -31.78399 -30.13836 -28.20449 -27.95477 -26.19800 -24.98408 -23.60672 -23.24220 -22.59591 -22.09841 -20.93579 -20.60644 -18.98057 -17.56488 -16.97957 -16.66458 -16.61790 -16.30356 -15.95397 -15.90316 -15.43326 -15.29018 -15.08169 -14.88936 -14.63633 -14.24172 -14.09241 -14.07325 -13.47043 -13.32262 -13.13203 -12.97363 -12.87278 -12.80601 -12.73882 -12.61391 -12.44899 -12.33900 -12.17041 -12.03146 -11.83624 -11.65167 -11.52695 -11.47598 -11.22186 -10.99923 -10.83094 -10.69916 -10.05991 -9.72933 -9.34304 -9.27703 -8.13032 -6.39094 0.46245 0.57884 1.40207 1.41956 1.50110 2.38453 2.82879 2.96674 3.12546 3.22852 3.79942 3.93180 3.93433 4.00283 4.08818 4.13525 4.16812 4.23664 4.24732 4.34019 4.37876 4.41442 4.55159 4.57703 4.63258 4.69530 4.78443 4.80411 4.84023 4.85809 4.92680 4.97249 5.03431 5.07660 5.08889 5.09705 5.18596 5.25081 5.26453 5.32886 5.38182 5.45392 5.49793 5.57811 5.61215 5.72891 5.77315 5.80605 6.04905 6.17694 6.25223 6.47986 6.74212 7.34867 7.61508 8.91224 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.002891 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.733666 B = 9683.156308 C =11094.875946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.091 4.091 9 C 0.161 3.839 10 H 0.039 0.961 11 N -0.672 5.672 12 C 0.061 3.939 13 C 0.235 3.765 14 H 0.015 0.985 15 O -0.569 6.569 16 C -0.587 4.587 17 H 0.058 0.942 18 C 0.025 3.975 19 N -0.899 5.899 20 Si 0.960 3.040 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.269 1.269 24 C -0.140 4.140 25 C -0.183 4.183 26 C -0.159 4.159 27 C -0.108 4.108 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.334 0.666 41 H 0.018 0.982 42 H 0.065 0.935 43 H 0.353 0.647 44 H 0.261 0.739 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.115 0.885 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.247 14.468 6.101 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.108 4.108 5 C -0.082 4.082 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.092 4.092 9 C 0.052 3.948 10 H 0.057 0.943 11 N -0.302 5.302 12 C -0.069 4.069 13 C 0.177 3.823 14 H 0.033 0.967 15 O -0.372 6.372 16 C -0.625 4.625 17 H 0.077 0.923 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.784 3.216 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.159 4.159 25 C -0.220 4.220 26 C -0.196 4.196 27 C -0.126 4.126 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.197 0.803 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.133 0.867 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.691 14.852 6.342 24.701 hybrid contribution -0.289 -1.475 -1.171 1.905 sum 18.401 13.376 5.172 23.330 Atomic orbital electron populations 1.21934 0.95775 1.01428 1.01850 1.21052 0.95582 0.96563 0.97521 1.21824 1.01327 0.94877 1.02099 1.20692 1.01737 0.89758 0.98627 1.20071 0.94193 0.96471 0.97504 1.21177 1.00381 0.92372 1.00003 1.21124 0.95933 0.96740 0.99879 1.19798 0.95533 0.94212 0.99608 1.19946 0.88205 0.91735 0.94942 0.94294 1.60462 1.15022 1.04061 1.50652 1.22466 0.97366 0.90958 0.96070 1.19171 0.85119 0.94051 0.84004 0.96676 1.86489 1.68138 1.53369 1.29225 1.21988 0.96246 1.01336 1.42972 0.92344 1.25903 0.96338 1.00413 0.95063 1.70215 1.02678 1.35278 1.45455 0.85614 0.77049 0.79842 0.79067 1.19155 1.21002 1.19371 1.22108 0.95538 1.00435 0.97860 1.23042 1.04632 0.91357 1.02923 1.22937 0.94072 1.00615 1.01983 1.21064 0.99422 0.93315 0.98819 1.21184 0.96850 0.95343 1.00526 0.92144 0.92864 0.93667 0.91914 0.91901 0.92595 0.92216 0.90507 0.89833 0.84296 0.85588 0.84780 0.96411 0.91658 0.80316 0.93004 0.88641 0.88418 0.89372 0.88444 0.87884 0.86703 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.76 71.98 0.63 -1.97 16 2 C -0.09 -1.30 2.91 -10.79 -0.03 -1.33 16 3 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 4 C -0.07 -1.03 4.84 29.85 0.14 -0.89 16 5 C -0.08 -1.62 4.71 -19.86 -0.09 -1.72 16 6 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 7 C -0.12 -2.71 9.44 22.27 0.21 -2.50 16 8 C -0.09 -2.45 4.45 -19.87 -0.09 -2.54 16 9 C 0.16 4.80 2.41 44.17 0.11 4.91 16 10 H 0.04 1.19 7.41 -2.39 -0.02 1.18 16 11 N -0.67 -24.43 5.56 -495.46 -2.75 -27.19 16 12 C 0.06 2.54 5.13 86.30 0.44 2.98 16 13 C 0.23 12.22 2.98 29.85 0.09 12.31 16 14 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 15 O -0.57 -30.46 12.59 -148.98 -1.88 -32.34 16 16 C -0.59 -32.67 8.76 25.60 0.22 -32.44 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 18 C 0.03 1.43 5.40 84.66 0.46 1.89 16 19 N -0.90 -54.58 12.84 21.45 0.28 -54.30 16 20 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C -0.14 -3.86 5.14 -10.79 -0.06 -3.92 16 25 C -0.18 -4.47 10.18 30.59 0.31 -4.15 16 26 C -0.16 -3.46 9.95 30.60 0.30 -3.16 16 27 C -0.11 -2.94 9.05 22.27 0.20 -2.74 16 28 C -0.12 -2.77 7.97 22.27 0.18 -2.59 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.94 6.27 -2.38 -0.01 0.92 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.13 2.54 8.04 -2.91 -0.02 2.52 16 40 H 0.33 12.74 8.00 -89.69 -0.72 12.02 16 41 H 0.02 0.74 7.95 -2.39 -0.02 0.72 16 42 H 0.06 2.70 8.02 -2.39 -0.02 2.68 16 43 H 0.35 17.07 9.04 -74.06 -0.67 16.40 16 44 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 45 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 48 H 0.10 1.98 7.91 -2.39 -0.02 1.96 16 49 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.11 3.49 7.71 -2.91 -0.02 3.47 16 51 H 0.13 2.58 8.04 -2.91 -0.02 2.56 16 Total: -1.00 -63.77 410.97 1.09 -62.69 By element: Atomic # 1 Polarization: 46.90 SS G_CDS: -0.49 Total: 46.41 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.91 Total: -41.04 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.48 Total: -81.49 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.88 Total: -32.34 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.77 1.09 -62.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930236672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.839 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds