Wall clock time and date at job start Tue Mar 31 2020 12:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46793 * 2 1 4 4 C 1.53001 * 109.46858 * 120.00053 * 2 1 3 5 5 C 1.50691 * 109.47183 * 65.00037 * 4 2 1 6 6 C 1.38242 * 120.00011 * 90.00313 * 5 4 2 7 7 C 1.38233 * 119.99887 * 179.72699 * 6 5 4 8 8 C 1.38233 * 120.00111 * 0.27008 * 7 6 5 9 9 C 1.50703 * 119.99954 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47148 * 19.99597 * 9 8 7 11 11 N 1.46897 * 109.47217 * 140.00196 * 9 8 7 12 12 C 1.46899 * 111.00084 * 202.77865 * 11 9 8 13 13 C 1.52997 * 109.47484 * 181.36508 * 12 11 9 14 14 H 1.09000 * 109.46968 * 59.99447 * 13 12 11 15 15 O 1.42905 * 109.47019 * 300.00015 * 13 12 11 16 16 C 1.50697 * 109.47303 * 180.02562 * 13 12 11 17 17 H 1.07996 * 120.00071 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00045 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99970 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00128 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47114 * 89.99830 * 20 18 16 22 22 H 1.48501 * 109.47187 * 210.00024 * 20 18 16 23 23 H 1.48503 * 109.46934 * 329.99956 * 20 18 16 24 24 C 1.53001 * 109.46821 * 260.00003 * 9 8 7 25 25 C 1.53001 * 117.50102 * 132.37877 * 24 9 8 26 26 C 1.52995 * 117.50027 * 63.75631 * 24 9 8 27 27 C 1.38236 * 120.00064 * 359.97438 * 8 7 6 28 28 C 1.38236 * 120.00092 * 359.95668 * 27 8 7 29 29 H 1.09000 * 109.47011 * 60.00416 * 1 2 3 30 30 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46677 * 300.00264 * 1 2 3 32 32 H 1.09005 * 109.47021 * 239.99930 * 2 1 3 33 33 H 1.09004 * 109.46973 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47454 * 299.99797 * 3 2 1 35 35 H 1.08998 * 109.47725 * 60.00377 * 3 2 1 36 36 H 1.09003 * 109.46746 * 304.99658 * 4 2 1 37 37 H 1.08999 * 109.46886 * 185.00106 * 4 2 1 38 38 H 1.07999 * 119.99896 * 359.97438 * 6 5 4 39 39 H 1.08003 * 120.00008 * 180.25207 * 7 6 5 40 40 H 1.00899 * 111.00246 * 326.73258 * 11 9 8 41 41 H 1.09003 * 109.46817 * 301.36312 * 12 11 9 42 42 H 1.09000 * 109.47469 * 61.36262 * 12 11 9 43 43 H 0.96701 * 114.00173 * 299.99912 * 15 13 12 44 44 H 0.96997 * 120.00335 * 180.02562 * 19 18 16 45 45 H 1.09003 * 115.55120 * 278.08576 * 24 9 8 46 46 H 1.09005 * 117.49477 * 0.02562 * 25 24 9 47 47 H 1.08992 * 117.50354 * 145.01871 * 25 24 9 48 48 H 1.09008 * 117.50157 * 214.98127 * 26 24 9 49 49 H 1.09005 * 117.49804 * 359.97345 * 26 24 9 50 50 H 1.08005 * 119.99999 * 179.97438 * 27 8 7 51 51 H 1.07994 * 120.00133 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1732 1.1889 6 6 2.4815 -3.0966 0.5951 7 6 2.1184 -4.4294 0.5447 8 6 0.9126 -4.8381 1.0832 9 6 0.5164 -6.2910 1.0277 10 1 1.4038 -6.9038 0.8693 11 7 -0.1228 -6.6730 2.2940 12 6 -0.0364 -8.1233 2.5109 13 6 -0.7409 -8.4862 3.8196 14 1 -1.7881 -8.1889 3.7630 15 8 -0.1101 -7.8039 4.9053 16 6 -0.6518 -9.9740 4.0424 17 1 -0.1438 -10.5983 3.3223 18 6 -1.2188 -10.5381 5.1655 19 7 -1.8369 -9.7777 6.0427 20 14 -1.1089 -12.3823 5.4413 21 1 0.1227 -12.6954 6.2095 22 1 -2.2979 -12.8405 6.2039 23 1 -1.0642 -13.0771 4.1296 24 6 -0.4658 -6.5082 -0.1251 25 6 -0.1999 -7.6835 -1.0679 26 6 0.0430 -6.2501 -1.5447 27 6 0.0701 -3.9140 1.6724 28 6 0.4339 -2.5813 1.7241 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.4234 -2.7773 0.1741 39 1 2.7766 -5.1515 0.0845 40 1 0.2791 -6.1670 3.0690 41 1 -0.5176 -8.6437 1.6828 42 1 1.0107 -8.4206 2.5675 43 1 0.8258 -8.0206 5.0155 44 1 -2.2355 -10.1745 6.8330 45 1 -1.5053 -6.2602 0.0898 46 1 0.6746 -8.3023 -0.8666 47 1 -1.0644 -8.2091 -1.4733 48 1 -0.6619 -5.8327 -2.2639 49 1 1.0773 -5.9252 -1.6574 50 1 -0.8722 -4.2332 2.0928 51 1 -0.2240 -1.8594 2.1848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930236674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:03 Heat of formation + Delta-G solvation = -27.523104 kcal Electronic energy + Delta-G solvation = -26527.276620 eV Core-core repulsion = 23004.996503 eV Total energy + Delta-G solvation = -3522.280117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.89543 -38.01139 -36.18435 -36.06934 -33.85847 -32.09039 -31.49798 -30.85057 -28.62200 -27.38050 -26.84940 -24.87059 -23.52370 -22.62560 -22.22932 -21.45631 -20.38743 -20.19438 -19.58417 -16.94889 -16.46739 -15.83942 -15.58219 -15.31987 -14.81233 -14.58165 -14.50756 -14.45690 -14.34741 -13.87532 -13.57044 -13.34776 -13.28589 -12.86039 -12.58507 -12.46758 -12.42338 -12.26464 -11.94911 -11.63017 -11.43048 -11.37072 -11.17272 -11.04717 -10.96249 -10.91107 -10.86626 -10.78527 -10.73806 -10.65041 -10.16380 -10.07503 -9.74497 -8.98779 -8.79247 -8.55970 -8.43114 -8.14263 -7.79397 -5.98352 -4.16423 1.40118 1.51762 3.28425 3.35550 3.38229 3.79041 3.98046 4.36313 4.53952 4.57840 4.62347 4.73909 4.90465 4.96968 5.06203 5.09265 5.13122 5.26313 5.28183 5.29130 5.36896 5.41584 5.44059 5.54597 5.59623 5.65525 5.67480 5.67804 5.73451 5.82519 5.85129 5.89323 6.01388 6.07891 6.10777 6.12788 6.18200 6.19466 6.23109 6.33118 6.43332 6.46875 6.53732 6.68488 6.77419 6.93889 7.11005 7.57923 7.78611 7.88095 8.03453 8.26094 8.87157 9.40700 9.60639 11.05876 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.002619 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.247521 B =10687.732427 C =11532.079601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.078 4.078 9 C 0.156 3.844 10 H 0.043 0.957 11 N -0.676 5.676 12 C 0.038 3.962 13 C 0.232 3.768 14 H 0.063 0.937 15 O -0.565 6.565 16 C -0.572 4.572 17 H 0.054 0.946 18 C 0.079 3.921 19 N -0.858 5.858 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.124 4.124 25 C -0.180 4.180 26 C -0.181 4.181 27 C -0.092 4.092 28 C -0.117 4.117 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.346 0.654 41 H 0.067 0.933 42 H 0.015 0.985 43 H 0.340 0.660 44 H 0.260 0.740 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.133 0.867 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 18.045 -14.151 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.078 4.078 9 C 0.046 3.954 10 H 0.061 0.939 11 N -0.308 5.308 12 C -0.090 4.090 13 C 0.175 3.825 14 H 0.081 0.919 15 O -0.367 6.367 16 C -0.610 4.610 17 H 0.072 0.928 18 C -0.127 4.127 19 N -0.494 5.494 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.143 4.143 25 C -0.217 4.217 26 C -0.218 4.218 27 C -0.110 4.110 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.183 0.817 44 H 0.070 0.930 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.150 0.850 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.419 18.275 -14.168 23.998 hybrid contribution 1.518 -1.583 0.243 2.207 sum 7.937 16.692 -13.924 23.141 Atomic orbital electron populations 1.21926 0.95075 1.02458 1.01372 1.21076 0.96239 0.95616 0.97981 1.21857 1.00826 0.96054 1.01752 1.20660 1.00842 0.91465 0.98275 1.19783 0.94870 0.95146 0.98773 1.20879 0.99476 0.92925 1.00689 1.20963 0.96288 0.95796 1.00137 1.19897 0.94221 0.95407 0.98306 1.19951 0.93740 0.90588 0.91169 0.93916 1.60492 1.59679 1.07919 1.02754 1.22874 0.98306 0.85820 1.02050 1.19417 0.92963 0.90468 0.79677 0.91898 1.86591 1.25379 1.69735 1.54980 1.21627 1.38401 0.93228 1.07753 0.92773 1.25034 0.94152 0.97651 0.95862 1.70083 1.34094 1.34730 1.10458 0.86685 0.77627 0.85840 0.78274 1.20610 1.21108 1.19865 1.22226 1.00387 1.02296 0.89374 1.22989 1.03238 0.91105 1.04381 1.22889 1.01899 0.99363 0.97695 1.21126 0.99967 0.92191 0.97739 1.21042 0.96208 0.95941 1.00345 0.93058 0.91849 0.92790 0.91237 0.92798 0.92744 0.92669 0.91112 0.91306 0.86674 0.86728 0.83422 0.91439 0.96718 0.81676 0.93030 0.87153 0.89171 0.88940 0.89214 0.89297 0.84950 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.75 37.16 0.33 -0.90 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.97 16 3 C -0.15 -0.96 9.19 37.15 0.34 -0.62 16 4 C -0.08 -0.64 4.84 -27.89 -0.13 -0.77 16 5 C -0.09 -0.92 4.72 -104.63 -0.49 -1.41 16 6 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 7 C -0.11 -1.37 9.49 -39.58 -0.38 -1.75 16 8 C -0.08 -1.05 4.46 -104.62 -0.47 -1.52 16 9 C 0.16 2.31 2.40 -68.86 -0.17 2.14 16 10 H 0.04 0.66 7.50 -51.93 -0.39 0.27 16 11 N -0.68 -11.99 5.66 -107.95 -0.61 -12.60 16 12 C 0.04 0.79 5.12 -3.83 -0.02 0.77 16 13 C 0.23 5.88 3.10 -27.89 -0.09 5.80 16 14 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 15 O -0.56 -14.38 12.09 -35.23 -0.43 -14.81 16 16 C -0.57 -15.73 8.76 -34.44 -0.30 -16.03 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 19 N -0.86 -25.54 12.84 55.43 0.71 -24.83 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.12 -1.74 5.05 -90.62 -0.46 -2.19 16 25 C -0.18 -2.33 10.18 -26.73 -0.27 -2.60 16 26 C -0.18 -2.13 9.97 -26.74 -0.27 -2.40 16 27 C -0.09 -1.23 9.06 -39.58 -0.36 -1.59 16 28 C -0.12 -1.37 7.95 -39.58 -0.31 -1.68 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.59 6.26 -51.93 -0.32 0.27 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.11 1.25 8.04 -52.48 -0.42 0.83 16 40 H 0.35 6.32 7.50 -39.29 -0.29 6.03 16 41 H 0.07 1.40 7.90 -51.93 -0.41 0.99 16 42 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 43 H 0.34 7.74 9.04 45.56 0.41 8.15 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 49 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 50 H 0.13 1.89 7.72 -52.48 -0.41 1.48 16 51 H 0.12 1.22 8.03 -52.49 -0.42 0.79 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -29.57 410.29 -11.49 -41.07 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -8.54 Total: 14.02 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -3.79 Total: -25.30 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.10 Total: -37.43 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.43 Total: -14.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.57 -11.49 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930236674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.545 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds