Wall clock time and date at job start Tue Mar 31 2020 11:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00123 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47223 * 89.99776 * 6 5 4 8 8 C 1.53126 * 109.52458 * 294.68770 * 7 6 5 9 9 C 1.53035 * 109.27882 * 182.43719 * 8 7 6 10 10 N 1.46845 * 109.52080 * 59.18171 * 9 8 7 11 11 C 1.46900 * 110.99858 * 174.16116 * 10 9 8 12 12 C 1.53000 * 109.47302 * 314.20677 * 11 10 9 13 13 H 1.08999 * 109.47069 * 59.99597 * 12 11 10 14 14 O 1.42910 * 109.46899 * 300.00121 * 12 11 10 15 15 C 1.50693 * 109.47661 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99665 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00151 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00219 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99958 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47593 * 59.99383 * 19 17 15 21 21 H 1.48496 * 109.47453 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47163 * 299.99530 * 19 17 15 23 23 C 1.46846 * 111.19840 * 298.25381 * 10 9 8 24 24 C 1.53033 * 109.52339 * 61.74198 * 23 10 9 25 25 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 26 26 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 27 27 C 1.50695 * 119.99818 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47076 * 209.99939 * 6 5 4 34 34 H 1.09003 * 109.47063 * 330.00245 * 6 5 4 35 35 H 1.08999 * 109.52402 * 54.87143 * 7 6 5 36 36 H 1.08996 * 109.49970 * 302.38289 * 8 7 6 37 37 H 1.09000 * 109.50061 * 62.49839 * 8 7 6 38 38 H 1.08997 * 109.46753 * 299.16073 * 9 8 7 39 39 H 1.09000 * 109.45055 * 179.18477 * 9 8 7 40 40 H 1.08996 * 109.47677 * 74.20556 * 11 10 9 41 41 H 1.09008 * 109.47286 * 194.20678 * 11 10 9 42 42 H 0.96701 * 114.00268 * 299.99876 * 14 12 11 43 43 H 0.96993 * 120.00027 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46261 * 301.73029 * 23 10 9 45 45 H 1.09000 * 109.45882 * 181.75968 * 23 10 9 46 46 H 1.08999 * 109.50762 * 180.88121 * 24 23 10 47 47 H 1.09005 * 109.53334 * 60.78674 * 24 23 10 48 48 H 1.08000 * 120.00080 * 180.02562 * 25 5 4 49 49 H 1.08995 * 109.47734 * 90.00064 * 27 26 2 50 50 H 1.09002 * 109.46829 * 210.00009 * 27 26 2 51 51 H 1.09000 * 109.47496 * 329.99322 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 6 6.2876 0.0007 1.4456 8 6 5.8894 1.3123 2.1281 9 6 6.4531 1.3331 3.5507 10 7 7.9156 1.2108 3.5009 11 6 8.5027 1.3657 4.8385 12 6 7.8679 2.5695 5.5378 13 1 6.7932 2.4117 5.6287 14 8 8.1128 3.7499 4.7704 15 6 8.4706 2.7289 6.9097 16 1 9.2301 2.0402 7.2492 17 6 8.0515 3.7533 7.7320 18 7 7.1263 4.5916 7.3188 19 14 8.7981 3.9504 9.4329 20 1 10.2622 4.1658 9.3091 21 1 8.1812 5.1180 10.1121 22 1 8.5440 2.7236 10.2303 23 6 8.3215 -0.0625 2.8924 24 6 7.8136 -0.1251 1.4502 25 6 3.5806 -1.1969 0.0016 26 6 2.1981 -1.1970 0.0058 27 6 1.4446 -2.5020 0.0116 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1326 0.0010 33 1 6.1424 -0.8902 -0.5104 34 1 6.1425 0.8898 -0.5112 35 1 5.8513 -0.8392 1.9862 36 1 6.2934 2.1531 1.5642 37 1 4.8027 1.3874 2.1661 38 1 6.0381 0.5001 4.1181 39 1 6.1835 2.2720 4.0343 40 1 8.3159 0.4655 5.4239 41 1 9.5774 1.5235 4.7476 42 1 9.0505 3.9524 4.6486 43 1 6.8313 5.3120 7.8974 44 1 7.8977 -0.8891 3.4628 45 1 9.4089 -0.1374 2.8981 46 1 8.1015 -1.0769 1.0038 47 1 8.2479 0.6927 0.8750 48 1 4.1206 -2.1322 0.0029 49 1 1.2633 -2.8215 -1.0146 50 1 2.0335 -3.2593 0.5292 51 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930541716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:22 Heat of formation + Delta-G solvation = -49.499613 kcal Electronic energy + Delta-G solvation = -26821.337757 eV Core-core repulsion = 23298.104668 eV Total energy + Delta-G solvation = -3523.233090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98698 -38.71285 -36.13260 -34.62471 -32.76150 -32.18887 -32.03008 -30.47163 -29.34770 -27.79626 -27.09967 -25.50989 -23.99755 -23.03899 -22.27961 -21.73602 -20.09641 -19.86609 -19.20034 -17.05798 -15.95559 -15.94198 -15.21958 -14.94587 -14.70609 -14.57107 -14.46991 -14.30359 -14.10178 -13.80349 -13.42601 -13.31144 -13.10027 -13.00472 -12.94991 -12.75533 -12.43976 -12.28421 -12.07220 -11.89353 -11.60145 -11.44751 -11.10242 -11.06295 -10.94942 -10.87859 -10.80908 -10.79036 -10.69007 -10.39242 -10.11670 -9.91566 -9.90948 -8.85048 -8.77187 -8.51970 -8.40463 -8.02248 -7.58681 -5.98486 -4.16401 1.29298 1.35058 3.29964 3.35231 3.36962 3.65383 4.36896 4.58554 4.62234 4.65599 4.79232 4.92009 4.94324 5.02836 5.06502 5.21789 5.24582 5.29149 5.30163 5.46035 5.49039 5.54595 5.60739 5.62277 5.65288 5.69117 5.74540 5.78901 5.85154 5.93739 6.01907 6.07466 6.10718 6.14510 6.18923 6.23059 6.31311 6.38120 6.40869 6.45953 6.55406 6.57175 6.62814 6.70252 6.75255 6.89809 7.00075 7.66675 7.76452 7.83645 7.90290 8.23548 8.86929 9.47756 9.63868 11.05673 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002680 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.799634 B =10445.420204 C =11299.122275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.074 4.074 6 C -0.075 4.075 7 C -0.081 4.081 8 C -0.108 4.108 9 C 0.053 3.947 10 N -0.527 5.527 11 C 0.030 3.970 12 C 0.231 3.769 13 H 0.058 0.942 14 O -0.556 6.556 15 C -0.574 4.574 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.054 3.946 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.089 4.089 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.096 0.904 40 H 0.024 0.976 41 H 0.063 0.937 42 H 0.344 0.656 43 H 0.261 0.739 44 H 0.023 0.977 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.118 0.882 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 -12.077 -17.422 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.074 4.074 6 C -0.112 4.112 7 C -0.099 4.099 8 C -0.145 4.145 9 C -0.075 4.075 10 N -0.252 5.252 11 C -0.097 4.097 12 C 0.173 3.827 13 H 0.075 0.925 14 O -0.358 6.358 15 C -0.613 4.613 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.716 3.284 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.075 4.075 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.089 4.089 27 C -0.173 4.173 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.188 0.812 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.136 0.864 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.610 -11.533 -17.686 23.198 hybrid contribution 0.786 -0.631 1.689 1.966 sum -8.824 -12.163 -15.998 21.948 Atomic orbital electron populations 1.20837 0.91609 1.02755 1.02025 1.19709 0.95782 0.92748 1.01446 1.21014 0.94282 0.97345 1.00650 1.21081 0.94017 0.97837 1.00281 1.19876 0.95805 0.92965 0.98767 1.20680 0.90559 1.02604 0.97394 1.21179 0.95485 0.98818 0.94457 1.21678 0.99787 0.96819 0.96257 1.22171 0.87578 1.01877 0.95862 1.61954 1.09140 1.31310 1.22780 1.23037 0.99347 1.00326 0.87026 1.19427 0.95846 0.79928 0.87536 0.92491 1.86533 1.27283 1.46720 1.75223 1.21627 1.24282 1.14545 1.00816 0.92817 1.25018 0.94356 0.95419 0.97837 1.70062 1.28023 1.15375 1.36023 0.86738 0.79597 0.77566 0.84457 1.20131 1.21197 1.20261 1.22056 0.99768 0.90991 0.94653 1.21609 0.94857 1.01263 0.96813 1.20867 0.93297 0.97595 1.01699 1.19697 0.93685 0.94739 1.00734 1.20838 1.00119 0.94235 1.02061 0.91470 0.91686 0.91347 0.86216 0.85895 0.91380 0.90867 0.91810 0.91264 0.91895 0.96293 0.88615 0.95806 0.91860 0.81222 0.92956 0.95929 0.91476 0.92338 0.91139 0.86435 0.91417 0.91749 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.61 36.01 0.35 -0.57 16 2 C -0.10 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.32 8.04 -39.58 -0.32 -1.64 16 5 C -0.07 -0.85 4.72 -104.62 -0.49 -1.34 16 6 C -0.08 -0.81 4.84 -27.88 -0.14 -0.94 16 7 C -0.08 -1.02 2.24 -90.50 -0.20 -1.23 16 8 C -0.11 -1.62 4.88 -26.65 -0.13 -1.75 16 9 C 0.05 0.98 4.85 -3.84 -0.02 0.96 16 10 N -0.53 -9.85 4.67 -234.68 -1.10 -10.94 16 11 C 0.03 0.64 4.87 -3.82 -0.02 0.62 16 12 C 0.23 5.87 2.12 -27.89 -0.06 5.81 16 13 H 0.06 1.59 6.21 -51.93 -0.32 1.27 16 14 O -0.56 -14.48 12.40 -35.23 -0.44 -14.92 16 15 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.05 0.83 5.42 -3.84 -0.02 0.81 16 24 C -0.11 -1.37 5.38 -26.66 -0.14 -1.51 16 25 C -0.12 -1.28 9.36 -39.58 -0.37 -1.65 16 26 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 27 C -0.12 -0.91 9.60 36.00 0.35 -0.57 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.35 8.04 -52.49 -0.42 0.93 16 33 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.93 6.45 -51.93 -0.33 0.60 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 2.09 5.66 -51.93 -0.29 1.80 16 40 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.34 8.16 9.04 45.56 0.41 8.57 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 51 H 0.07 0.48 5.94 -51.93 -0.31 0.18 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -30.59 393.59 -11.43 -42.03 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.29 Total: 8.29 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.23 Total: -21.88 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.38 Total: -35.76 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.44 Total: -14.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.59 -11.43 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.471 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds