Wall clock time and date at job start Tue Mar 31 2020 11:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00123 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47223 * 89.99776 * 6 5 4 8 8 C 1.53126 * 109.52458 * 294.68770 * 7 6 5 9 9 C 1.53035 * 109.27882 * 182.43719 * 8 7 6 10 10 N 1.46845 * 109.52080 * 59.18171 * 9 8 7 11 11 C 1.46900 * 110.99858 * 174.16116 * 10 9 8 12 12 C 1.53000 * 109.47302 * 314.20677 * 11 10 9 13 13 H 1.08999 * 109.47069 * 59.99597 * 12 11 10 14 14 O 1.42910 * 109.46899 * 300.00121 * 12 11 10 15 15 C 1.50693 * 109.47661 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99665 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00151 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00219 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99958 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47593 * 59.99383 * 19 17 15 21 21 H 1.48496 * 109.47453 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47163 * 299.99530 * 19 17 15 23 23 C 1.46846 * 111.19840 * 298.25381 * 10 9 8 24 24 C 1.53033 * 109.52339 * 61.74198 * 23 10 9 25 25 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 26 26 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 27 27 C 1.50695 * 119.99818 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47076 * 209.99939 * 6 5 4 34 34 H 1.09003 * 109.47063 * 330.00245 * 6 5 4 35 35 H 1.08999 * 109.52402 * 54.87143 * 7 6 5 36 36 H 1.08996 * 109.49970 * 302.38289 * 8 7 6 37 37 H 1.09000 * 109.50061 * 62.49839 * 8 7 6 38 38 H 1.08997 * 109.46753 * 299.16073 * 9 8 7 39 39 H 1.09000 * 109.45055 * 179.18477 * 9 8 7 40 40 H 1.08996 * 109.47677 * 74.20556 * 11 10 9 41 41 H 1.09008 * 109.47286 * 194.20678 * 11 10 9 42 42 H 0.96701 * 114.00268 * 299.99876 * 14 12 11 43 43 H 0.96993 * 120.00027 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46261 * 301.73029 * 23 10 9 45 45 H 1.09000 * 109.45882 * 181.75968 * 23 10 9 46 46 H 1.08999 * 109.50762 * 180.88121 * 24 23 10 47 47 H 1.09005 * 109.53334 * 60.78674 * 24 23 10 48 48 H 1.08000 * 120.00080 * 180.02562 * 25 5 4 49 49 H 1.08995 * 109.47734 * 90.00064 * 27 26 2 50 50 H 1.09002 * 109.46829 * 210.00009 * 27 26 2 51 51 H 1.09000 * 109.47496 * 329.99322 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 6 6.2876 0.0007 1.4456 8 6 5.8894 1.3123 2.1281 9 6 6.4531 1.3331 3.5507 10 7 7.9156 1.2108 3.5009 11 6 8.5027 1.3657 4.8385 12 6 7.8679 2.5695 5.5378 13 1 6.7932 2.4117 5.6287 14 8 8.1128 3.7499 4.7704 15 6 8.4706 2.7289 6.9097 16 1 9.2301 2.0402 7.2492 17 6 8.0515 3.7533 7.7320 18 7 7.1263 4.5916 7.3188 19 14 8.7981 3.9504 9.4329 20 1 10.2622 4.1658 9.3091 21 1 8.1812 5.1180 10.1121 22 1 8.5440 2.7236 10.2303 23 6 8.3215 -0.0625 2.8924 24 6 7.8136 -0.1251 1.4502 25 6 3.5806 -1.1969 0.0016 26 6 2.1981 -1.1970 0.0058 27 6 1.4446 -2.5020 0.0116 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1326 0.0010 33 1 6.1424 -0.8902 -0.5104 34 1 6.1425 0.8898 -0.5112 35 1 5.8513 -0.8392 1.9862 36 1 6.2934 2.1531 1.5642 37 1 4.8027 1.3874 2.1661 38 1 6.0381 0.5001 4.1181 39 1 6.1835 2.2720 4.0343 40 1 8.3159 0.4655 5.4239 41 1 9.5774 1.5235 4.7476 42 1 9.0505 3.9524 4.6486 43 1 6.8313 5.3120 7.8974 44 1 7.8977 -0.8891 3.4628 45 1 9.4089 -0.1374 2.8981 46 1 8.1015 -1.0769 1.0038 47 1 8.2479 0.6927 0.8750 48 1 4.1206 -2.1322 0.0029 49 1 1.2633 -2.8215 -1.0146 50 1 2.0335 -3.2593 0.5292 51 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930541716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:21 Heat of formation + Delta-G solvation = -67.268506 kcal Electronic energy + Delta-G solvation = -26822.108275 eV Core-core repulsion = 23298.104668 eV Total energy + Delta-G solvation = -3524.003607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89079 -39.98095 -37.77462 -35.94387 -34.24243 -33.78407 -33.00334 -31.75864 -30.67272 -29.18195 -27.98244 -26.80531 -25.46118 -24.43363 -23.30479 -22.79028 -21.69859 -20.72589 -20.49705 -19.12944 -16.83065 -16.76790 -16.69485 -16.65908 -16.28664 -16.03203 -15.68903 -15.58084 -15.21576 -15.09968 -14.77808 -14.60278 -14.26292 -14.04453 -13.92709 -13.58765 -13.51224 -13.36992 -13.18945 -12.96176 -12.87265 -12.82162 -12.65465 -12.58779 -12.40369 -12.33193 -12.09590 -12.02698 -11.85335 -11.69064 -11.55777 -11.30126 -11.07642 -10.83759 -10.62372 -10.06502 -9.58532 -9.22106 -9.11587 -8.14172 -6.40273 0.47975 0.53143 1.39311 1.41193 1.49392 2.37562 2.83530 3.08503 3.12810 3.75081 3.83957 3.93741 3.98540 4.02079 4.14304 4.19201 4.28515 4.30284 4.34324 4.38079 4.51389 4.52237 4.56129 4.62315 4.68134 4.72509 4.74905 4.80064 4.81855 4.88946 4.90710 4.95920 4.98907 5.01707 5.04961 5.08254 5.12131 5.19981 5.25143 5.27711 5.34135 5.45052 5.54155 5.60026 5.62054 5.75413 5.79525 5.82037 6.01434 6.21582 6.23767 6.37724 6.72673 7.33537 7.59729 8.90063 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002680 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.799634 B =10445.420204 C =11299.122275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.086 4.086 6 C -0.066 4.066 7 C -0.072 4.072 8 C -0.096 4.096 9 C 0.059 3.941 10 N -0.532 5.532 11 C 0.046 3.954 12 C 0.233 3.767 13 H 0.023 0.977 14 O -0.569 6.569 15 C -0.591 4.591 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.050 3.950 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.099 4.099 27 C -0.115 4.115 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.011 0.989 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.070 0.930 42 H 0.353 0.647 43 H 0.261 0.739 44 H 0.022 0.978 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 -13.950 -18.272 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.148 4.148 4 C -0.149 4.149 5 C -0.087 4.087 6 C -0.103 4.103 7 C -0.091 4.091 8 C -0.134 4.134 9 C -0.069 4.069 10 N -0.257 5.257 11 C -0.082 4.082 12 C 0.175 3.825 13 H 0.041 0.959 14 O -0.373 6.373 15 C -0.629 4.629 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.078 4.078 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.099 4.099 27 C -0.171 4.171 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.198 0.802 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.088 0.912 48 H 0.150 0.850 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.085 -13.423 -18.549 24.633 hybrid contribution 0.576 -0.047 1.928 2.013 sum -8.510 -13.470 -16.620 23.024 Atomic orbital electron populations 1.20878 0.89921 1.03364 1.02929 1.20064 0.97222 0.92625 1.00886 1.21248 0.94381 0.98240 1.00959 1.21206 0.94523 0.98079 1.01136 1.20004 0.96238 0.93123 0.99286 1.20599 0.90127 1.03707 0.95874 1.21086 0.95763 0.96723 0.95501 1.21566 0.99413 0.98441 0.94003 1.22031 0.87946 0.99227 0.97740 1.61952 1.08837 1.33857 1.21071 1.22693 0.99332 0.98025 0.88188 1.19252 0.94200 0.81405 0.87638 0.95894 1.86487 1.28140 1.47386 1.75239 1.22034 1.24284 1.14613 1.01973 0.92373 1.25906 0.94682 0.95043 1.02053 1.70212 1.29574 1.16105 1.37692 0.85601 0.79012 0.77646 0.79236 1.19044 1.20940 1.19459 1.22215 1.00585 0.88933 0.96035 1.21595 0.94351 1.02993 0.94860 1.21122 0.93801 0.97956 1.01549 1.20076 0.93926 0.95862 1.00029 1.20881 1.00220 0.92974 1.03014 0.90327 0.91501 0.90339 0.85410 0.86174 0.89296 0.90696 0.92147 0.91881 0.92042 0.97122 0.92889 0.96203 0.91124 0.80223 0.92982 0.95948 0.90355 0.89143 0.91163 0.85022 0.90222 0.91213 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.61 71.24 0.68 -0.97 16 2 C -0.11 -2.18 5.88 -19.87 -0.12 -2.29 16 3 C -0.13 -2.87 9.70 22.27 0.22 -2.65 16 4 C -0.13 -3.05 8.04 22.27 0.18 -2.87 16 5 C -0.09 -1.90 4.72 -19.87 -0.09 -1.99 16 6 C -0.07 -1.29 4.84 29.85 0.14 -1.14 16 7 C -0.07 -1.72 2.24 -10.72 -0.02 -1.74 16 8 C -0.10 -2.94 4.88 30.65 0.15 -2.79 16 9 C 0.06 2.27 4.85 86.33 0.42 2.68 16 10 N -0.53 -19.96 4.67 -896.38 -4.19 -24.15 16 11 C 0.05 1.96 4.87 86.30 0.42 2.38 16 12 C 0.23 12.28 2.12 29.85 0.06 12.34 16 13 H 0.02 1.38 6.21 -2.39 -0.01 1.36 16 14 O -0.57 -30.68 12.40 -148.98 -1.85 -32.52 16 15 C -0.59 -33.21 8.76 25.60 0.22 -32.99 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.03 1.46 5.40 84.65 0.46 1.92 16 18 N -0.90 -54.76 12.84 21.45 0.28 -54.49 16 19 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.05 1.45 5.42 86.32 0.47 1.92 16 24 C -0.10 -2.29 5.38 30.64 0.16 -2.12 16 25 C -0.13 -2.58 9.36 22.27 0.21 -2.37 16 26 C -0.10 -1.93 5.88 -19.87 -0.12 -2.05 16 27 C -0.11 -1.56 9.60 71.23 0.68 -0.87 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.08 0.96 5.94 -2.38 -0.01 0.95 16 31 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.12 2.72 8.04 -2.91 -0.02 2.70 16 33 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 34 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.88 6.45 -2.39 -0.02 1.86 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 2.49 5.66 -2.39 -0.01 2.47 16 40 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.07 2.91 8.14 -2.38 -0.02 2.90 16 42 H 0.35 17.13 9.04 -74.06 -0.67 16.46 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 51 H 0.08 0.91 5.94 -2.39 -0.01 0.90 16 Total: -1.00 -67.01 393.59 0.62 -66.39 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.23 Total: 34.39 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.13 Total: -35.61 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.91 Total: -78.64 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.85 Total: -32.52 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.01 0.62 -66.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.881 kcal (2) G-P(sol) polarization free energy of solvation -67.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds