Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38232 * 120.00351 * 2 1 4 4 C 1.38235 * 120.00362 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00109 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99906 * 359.96201 * 4 3 2 7 7 C 1.38232 * 119.99767 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.00182 * 180.02562 * 7 6 4 9 9 C 1.53114 * 109.52732 * 119.99415 * 8 7 6 10 10 C 1.53037 * 109.31211 * 177.54197 * 9 8 7 11 11 N 1.46854 * 109.52285 * 300.88400 * 10 9 8 12 12 C 1.46895 * 110.99648 * 185.80147 * 11 10 9 13 13 C 1.52996 * 109.47373 * 65.74825 * 12 11 10 14 14 O 1.42904 * 109.47497 * 64.99698 * 13 12 11 15 15 C 1.42895 * 114.00121 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47140 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99791 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00547 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99236 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00476 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46860 * 59.99940 * 20 18 16 22 22 H 1.48495 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47030 * 300.00156 * 20 18 16 24 24 C 1.46840 * 111.23238 * 61.67711 * 11 10 9 25 25 C 1.53035 * 109.52994 * 298.28004 * 24 11 10 26 26 C 1.38236 * 120.00184 * 0.26869 * 7 6 4 27 27 H 1.09002 * 109.47169 * 89.99300 * 1 2 3 28 28 H 1.08999 * 109.47577 * 209.99441 * 1 2 3 29 29 H 1.08996 * 109.46793 * 329.99863 * 1 2 3 30 30 H 1.08005 * 119.99772 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.47460 * 269.98106 * 5 4 3 32 32 H 1.08998 * 109.46873 * 29.98710 * 5 4 3 33 33 H 1.09003 * 109.46463 * 149.98289 * 5 4 3 34 34 H 1.08000 * 119.99912 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.51866 * 359.86234 * 8 7 6 36 36 H 1.09002 * 109.50377 * 297.50321 * 9 8 7 37 37 H 1.09003 * 109.50316 * 57.58317 * 9 8 7 38 38 H 1.09000 * 109.46159 * 60.85546 * 10 9 8 39 39 H 1.09000 * 109.46461 * 180.82902 * 10 9 8 40 40 H 1.09006 * 109.47095 * 185.74417 * 12 11 10 41 41 H 1.08994 * 109.47117 * 305.74495 * 12 11 10 42 42 H 1.09004 * 109.47640 * 185.00303 * 13 12 11 43 43 H 1.09008 * 109.47009 * 305.00195 * 13 12 11 44 44 H 1.09000 * 109.47059 * 300.00042 * 15 14 13 45 45 H 1.08999 * 109.47334 * 60.00307 * 15 14 13 46 46 H 0.97003 * 119.99549 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.46294 * 178.26219 * 24 11 10 48 48 H 1.09003 * 109.45458 * 58.29272 * 24 11 10 49 49 H 1.09005 * 109.50290 * 299.24575 * 25 24 11 50 50 H 1.08998 * 109.54151 * 179.13613 * 25 24 11 51 51 H 1.08002 * 120.00221 * 179.72459 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 -0.0001 -0.0003 7 6 3.5805 -1.1972 0.0011 8 6 4.3339 -2.5024 0.0019 9 6 3.9655 -3.3052 1.2526 10 6 4.6857 -4.6550 1.2179 11 7 4.2933 -5.3898 0.0085 12 6 4.8580 -6.7458 0.0100 13 6 4.2395 -7.5547 1.1519 14 8 2.8416 -7.7276 0.9106 15 6 2.1647 -8.4736 1.9241 16 6 0.7053 -8.5943 1.5687 17 1 0.3319 -8.1458 0.6599 18 6 -0.1535 -9.2774 2.4036 19 7 0.3014 -9.8240 3.5100 20 14 -1.9628 -9.4264 1.9635 21 1 -2.0991 -10.1244 0.6598 22 1 -2.6662 -10.2018 3.0166 23 1 -2.5613 -8.0710 1.8643 24 6 4.6795 -4.6601 -1.2058 25 6 3.9583 -3.3109 -1.2431 26 6 2.1982 -1.1972 -0.0035 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 0.0004 31 1 4.5157 2.8165 -1.0289 32 1 3.7451 3.2620 0.5126 33 1 5.2866 2.3719 0.5127 34 1 5.3518 -0.0001 -0.0011 35 1 5.4058 -2.3042 -0.0011 36 1 4.2695 -2.7532 2.1420 37 1 2.8879 -3.4682 1.2760 38 1 5.7634 -4.4915 1.2091 39 1 4.4136 -5.2346 2.1001 40 1 4.6379 -7.2321 -0.9404 41 1 5.9377 -6.6895 0.1479 42 1 4.7218 -8.5305 1.2089 43 1 4.3827 -7.0232 2.0928 44 1 2.6040 -9.4685 1.9973 45 1 2.2649 -7.9609 2.8807 46 1 -0.3028 -10.3043 4.0976 47 1 4.4030 -5.2440 -2.0838 48 1 5.7571 -4.4960 -1.2035 49 1 2.8807 -3.4745 -1.2591 50 1 4.2566 -2.7626 -2.1367 51 1 1.6581 -2.1325 -0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934802516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -45.492891 kcal Electronic energy + Delta-G solvation = -26466.232587 eV Core-core repulsion = 22943.173241 eV Total energy + Delta-G solvation = -3523.059345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14830 -38.67283 -36.56734 -34.60027 -33.63138 -32.64785 -31.21692 -30.78158 -28.60891 -27.41577 -26.82073 -26.62456 -24.37068 -23.09556 -22.23757 -21.49947 -20.90989 -20.44681 -19.22309 -16.52663 -16.33867 -16.14717 -15.74824 -15.51596 -14.98233 -14.60863 -14.28940 -14.24965 -14.24200 -13.94983 -13.67669 -13.56852 -13.38187 -13.03947 -12.95082 -12.81861 -12.70029 -12.27666 -12.12459 -12.01478 -11.86436 -11.54950 -11.47932 -11.22579 -11.13832 -11.08232 -10.79957 -10.72265 -10.66639 -10.54838 -10.26875 -10.12769 -9.86994 -9.03162 -8.72864 -8.63315 -8.60867 -8.08039 -7.98046 -6.04888 -4.05575 1.28940 1.29489 3.36220 3.38397 3.42775 3.62073 4.06088 4.40398 4.50062 4.60633 4.66870 4.86190 4.91387 5.02857 5.05830 5.07908 5.18796 5.28517 5.30467 5.31478 5.34229 5.41104 5.45283 5.47155 5.51207 5.53473 5.61876 5.62948 5.65296 5.73701 5.76014 5.85122 5.89968 5.96608 6.05319 6.08208 6.10305 6.13185 6.22345 6.25869 6.35938 6.38920 6.46416 6.54665 6.65942 6.96984 7.17525 7.34306 7.36259 7.50884 7.86874 8.23902 8.69567 9.09201 9.58958 11.06818 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002897 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.754072 B = 9661.327558 C =11305.173141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.062 4.062 8 C -0.048 4.048 9 C -0.106 4.106 10 C 0.055 3.945 11 N -0.523 5.523 12 C 0.062 3.938 13 C 0.066 3.934 14 O -0.379 6.379 15 C 0.195 3.805 16 C -0.509 4.509 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.058 3.942 25 C -0.106 4.106 26 C -0.116 4.116 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.001 0.999 45 H 0.002 0.998 46 H 0.263 0.737 47 H 0.075 0.925 48 H 0.026 0.974 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 22.033 -7.771 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.169 4.169 6 C -0.144 4.144 7 C -0.062 4.062 8 C -0.066 4.066 9 C -0.144 4.144 10 C -0.073 4.073 11 N -0.248 5.248 12 C -0.066 4.066 13 C -0.012 4.012 14 O -0.298 6.298 15 C 0.120 3.880 16 C -0.548 4.548 17 H 0.084 0.916 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.070 4.070 25 C -0.144 4.144 26 C -0.134 4.134 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.618 21.951 -7.771 25.194 hybrid contribution 0.135 -0.237 0.218 0.349 sum 9.753 21.714 -7.553 24.973 Atomic orbital electron populations 1.20809 0.91220 1.02911 1.02341 1.19914 0.96053 0.93052 0.98970 1.20847 0.93459 0.97411 1.03039 1.19836 0.93818 0.95114 0.99830 1.20767 0.99811 0.94229 1.02105 1.20884 0.99330 0.91488 1.02726 1.19845 0.93737 0.94452 0.98145 1.20234 0.98576 0.91489 0.96333 1.21639 1.02246 0.94219 0.96307 1.22129 0.96306 0.94703 0.94129 1.61760 1.59949 1.01698 1.01368 1.22113 0.94963 0.88932 1.00551 1.22271 0.86077 0.96778 0.96093 1.87947 1.17108 1.75871 1.48896 1.20155 0.92035 0.89564 0.86222 1.21026 0.92083 1.33888 1.07774 0.91601 1.24949 0.99394 0.95398 0.94853 1.69961 1.35720 1.36074 1.12289 0.86413 0.83889 0.78275 0.77994 1.20057 1.21246 1.20016 1.22056 0.96602 0.94793 0.93514 1.21642 1.02016 0.94276 0.96454 1.20988 0.93690 0.97798 1.00900 0.91201 0.91152 0.91754 0.86529 0.91383 0.91729 0.91696 0.86523 0.91089 0.91750 0.90323 0.95658 0.90014 0.90155 0.94572 0.94431 0.94605 0.98099 0.98003 0.92718 0.90658 0.95619 0.90479 0.91818 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.13 -1.31 9.36 -39.58 -0.37 -1.68 16 4 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 5 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 6 C -0.13 -1.32 9.33 -39.58 -0.37 -1.69 16 7 C -0.06 -0.70 4.79 -104.62 -0.50 -1.20 16 8 C -0.05 -0.54 2.43 -91.65 -0.22 -0.76 16 9 C -0.11 -1.36 5.23 -26.65 -0.14 -1.49 16 10 C 0.06 0.76 5.30 -3.83 -0.02 0.74 16 11 N -0.52 -7.97 4.60 -234.68 -1.08 -9.05 16 12 C 0.06 0.96 5.34 -3.83 -0.02 0.94 16 13 C 0.07 1.25 6.00 37.16 0.22 1.47 16 14 O -0.38 -9.38 10.27 -35.23 -0.36 -9.74 16 15 C 0.19 5.47 5.69 36.00 0.20 5.67 16 16 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 17 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 20 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 25 C -0.11 -1.23 5.22 -26.65 -0.14 -1.37 16 26 C -0.12 -1.38 8.32 -39.58 -0.33 -1.71 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.12 1.04 7.95 -52.49 -0.42 0.63 16 35 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.15 7.33 -51.93 -0.38 0.77 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 1.26 6.12 -51.93 -0.32 0.94 16 40 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 41 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.67 6.22 -51.92 -0.32 0.34 16 44 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 45 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 48 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 1.01 7.29 -51.93 -0.38 0.63 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.13 1.55 7.06 -52.49 -0.37 1.18 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -32.26 401.94 -11.61 -43.87 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -9.30 Total: -3.08 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.64 Total: -18.61 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.34 Total: -35.72 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.26 -11.61 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934802516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.621 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds