Wall clock time and date at job start Tue Mar 31 2020 11:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38232 * 120.00351 * 2 1 4 4 C 1.38235 * 120.00362 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00109 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99906 * 359.96201 * 4 3 2 7 7 C 1.38232 * 119.99767 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.00182 * 180.02562 * 7 6 4 9 9 C 1.53114 * 109.52732 * 119.99415 * 8 7 6 10 10 C 1.53037 * 109.31211 * 177.54197 * 9 8 7 11 11 N 1.46854 * 109.52285 * 300.88400 * 10 9 8 12 12 C 1.46895 * 110.99648 * 185.80147 * 11 10 9 13 13 C 1.52996 * 109.47373 * 65.74825 * 12 11 10 14 14 O 1.42904 * 109.47497 * 64.99698 * 13 12 11 15 15 C 1.42895 * 114.00121 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47140 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99791 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00547 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99236 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00476 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46860 * 59.99940 * 20 18 16 22 22 H 1.48495 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47030 * 300.00156 * 20 18 16 24 24 C 1.46840 * 111.23238 * 61.67711 * 11 10 9 25 25 C 1.53035 * 109.52994 * 298.28004 * 24 11 10 26 26 C 1.38236 * 120.00184 * 0.26869 * 7 6 4 27 27 H 1.09002 * 109.47169 * 89.99300 * 1 2 3 28 28 H 1.08999 * 109.47577 * 209.99441 * 1 2 3 29 29 H 1.08996 * 109.46793 * 329.99863 * 1 2 3 30 30 H 1.08005 * 119.99772 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.47460 * 269.98106 * 5 4 3 32 32 H 1.08998 * 109.46873 * 29.98710 * 5 4 3 33 33 H 1.09003 * 109.46463 * 149.98289 * 5 4 3 34 34 H 1.08000 * 119.99912 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.51866 * 359.86234 * 8 7 6 36 36 H 1.09002 * 109.50377 * 297.50321 * 9 8 7 37 37 H 1.09003 * 109.50316 * 57.58317 * 9 8 7 38 38 H 1.09000 * 109.46159 * 60.85546 * 10 9 8 39 39 H 1.09000 * 109.46461 * 180.82902 * 10 9 8 40 40 H 1.09006 * 109.47095 * 185.74417 * 12 11 10 41 41 H 1.08994 * 109.47117 * 305.74495 * 12 11 10 42 42 H 1.09004 * 109.47640 * 185.00303 * 13 12 11 43 43 H 1.09008 * 109.47009 * 305.00195 * 13 12 11 44 44 H 1.09000 * 109.47059 * 300.00042 * 15 14 13 45 45 H 1.08999 * 109.47334 * 60.00307 * 15 14 13 46 46 H 0.97003 * 119.99549 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.46294 * 178.26219 * 24 11 10 48 48 H 1.09003 * 109.45458 * 58.29272 * 24 11 10 49 49 H 1.09005 * 109.50290 * 299.24575 * 25 24 11 50 50 H 1.08998 * 109.54151 * 179.13613 * 25 24 11 51 51 H 1.08002 * 120.00221 * 179.72459 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 -0.0001 -0.0003 7 6 3.5805 -1.1972 0.0011 8 6 4.3339 -2.5024 0.0019 9 6 3.9655 -3.3052 1.2526 10 6 4.6857 -4.6550 1.2179 11 7 4.2933 -5.3898 0.0085 12 6 4.8580 -6.7458 0.0100 13 6 4.2395 -7.5547 1.1519 14 8 2.8416 -7.7276 0.9106 15 6 2.1647 -8.4736 1.9241 16 6 0.7053 -8.5943 1.5687 17 1 0.3319 -8.1458 0.6599 18 6 -0.1535 -9.2774 2.4036 19 7 0.3014 -9.8240 3.5100 20 14 -1.9628 -9.4264 1.9635 21 1 -2.0991 -10.1244 0.6598 22 1 -2.6662 -10.2018 3.0166 23 1 -2.5613 -8.0710 1.8643 24 6 4.6795 -4.6601 -1.2058 25 6 3.9583 -3.3109 -1.2431 26 6 2.1982 -1.1972 -0.0035 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 0.0004 31 1 4.5157 2.8165 -1.0289 32 1 3.7451 3.2620 0.5126 33 1 5.2866 2.3719 0.5127 34 1 5.3518 -0.0001 -0.0011 35 1 5.4058 -2.3042 -0.0011 36 1 4.2695 -2.7532 2.1420 37 1 2.8879 -3.4682 1.2760 38 1 5.7634 -4.4915 1.2091 39 1 4.4136 -5.2346 2.1001 40 1 4.6379 -7.2321 -0.9404 41 1 5.9377 -6.6895 0.1479 42 1 4.7218 -8.5305 1.2089 43 1 4.3827 -7.0232 2.0928 44 1 2.6040 -9.4685 1.9973 45 1 2.2649 -7.9609 2.8807 46 1 -0.3028 -10.3043 4.0976 47 1 4.4030 -5.2440 -2.0838 48 1 5.7571 -4.4960 -1.2035 49 1 2.8807 -3.4745 -1.2591 50 1 4.2566 -2.7626 -2.1367 51 1 1.6581 -2.1325 -0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934802516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:48 Heat of formation + Delta-G solvation = -62.912245 kcal Electronic energy + Delta-G solvation = -26466.987947 eV Core-core repulsion = 22943.173241 eV Total energy + Delta-G solvation = -3523.814705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02744 -39.73174 -38.31759 -35.75979 -34.82258 -34.35859 -32.28145 -31.80758 -30.10290 -28.67767 -28.03889 -27.55424 -25.49204 -24.46634 -24.12240 -22.64771 -21.76999 -21.46061 -20.15889 -18.61001 -17.53284 -17.40140 -17.16894 -16.59218 -16.43764 -16.03239 -15.76392 -15.55412 -15.19776 -15.04564 -14.81467 -14.52889 -14.40603 -14.03637 -13.99990 -13.77310 -13.64352 -13.54795 -13.33530 -13.09135 -13.03050 -12.81472 -12.71702 -12.66363 -12.49778 -12.26814 -12.19480 -12.12555 -12.00958 -11.85311 -11.51691 -11.33758 -11.25530 -11.05984 -10.83609 -10.16211 -9.44487 -9.41016 -9.10032 -8.31486 -6.43344 0.47646 0.48755 1.38738 1.44004 1.52313 2.35059 2.81150 2.94217 3.01907 3.26464 3.63820 3.75883 3.93865 3.95400 4.04642 4.17323 4.23954 4.28727 4.30561 4.34585 4.44941 4.48126 4.50924 4.54259 4.60876 4.64086 4.65499 4.72041 4.75773 4.78594 4.82575 4.86483 4.91754 4.92098 4.98667 5.01784 5.04758 5.08124 5.13546 5.19825 5.21284 5.33115 5.36949 5.42138 5.55743 5.69871 5.71569 5.80802 5.98237 6.18532 6.19766 6.29079 6.57985 6.87405 7.28780 8.80776 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002897 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.754072 B = 9661.327558 C =11305.173141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.089 4.089 5 C -0.111 4.111 6 C -0.133 4.133 7 C -0.070 4.070 8 C -0.038 4.038 9 C -0.102 4.102 10 C 0.058 3.942 11 N -0.553 5.553 12 C 0.071 3.929 13 C 0.056 3.944 14 O -0.394 6.394 15 C 0.211 3.789 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.982 3.018 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.266 1.266 24 C 0.061 3.939 25 C -0.101 4.101 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.037 0.963 44 H -0.017 1.017 45 H -0.020 1.020 46 H 0.270 0.730 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.081 0.919 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 23.849 -8.757 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.089 4.089 5 C -0.167 4.167 6 C -0.151 4.151 7 C -0.070 4.070 8 C -0.057 4.057 9 C -0.139 4.139 10 C -0.070 4.070 11 N -0.279 5.279 12 C -0.056 4.056 13 C -0.022 4.022 14 O -0.314 6.314 15 C 0.135 3.865 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.191 1.191 24 C -0.067 4.067 25 C -0.139 4.139 26 C -0.156 4.156 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.001 0.999 45 H -0.003 1.003 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.099 0.901 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.276 23.776 -8.765 27.345 hybrid contribution 0.009 -0.764 0.550 0.941 sum 10.286 23.012 -8.215 26.511 Atomic orbital electron populations 1.20826 0.90365 1.03127 1.02861 1.20157 0.96959 0.93150 0.98930 1.21128 0.93973 0.97723 1.02635 1.20223 0.93974 0.96222 0.98492 1.20814 0.99985 0.92876 1.03042 1.21123 1.00296 0.91217 1.02454 1.19888 0.93474 0.94979 0.98685 1.20153 0.99442 0.91078 0.94992 1.21566 1.00284 0.94285 0.97813 1.22077 0.97616 0.94490 0.92795 1.61692 1.61248 1.02080 1.02830 1.22018 0.96327 0.88628 0.98665 1.22637 0.83234 0.98112 0.98181 1.87903 1.20334 1.75267 1.47866 1.19757 0.91994 0.88647 0.86052 1.21342 0.93455 1.35245 1.08233 0.92277 1.25967 1.04711 0.94242 0.94362 1.70070 1.37820 1.36089 1.13108 0.85256 0.77159 0.78784 0.78350 1.18925 1.19830 1.19132 1.22083 0.97847 0.94615 0.92108 1.21593 1.00501 0.94323 0.97497 1.20989 0.94341 0.97608 1.02630 0.90502 0.92182 0.90254 0.84658 0.90331 0.90770 0.90799 0.84740 0.89284 0.90922 0.93278 0.93374 0.92426 0.90224 0.91204 0.93577 0.94501 0.99899 1.00258 0.92073 0.90732 0.93467 0.92869 0.90088 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 10.01 71.24 0.71 -1.39 16 2 C -0.09 -2.01 5.88 -19.87 -0.12 -2.13 16 3 C -0.14 -2.58 9.36 22.27 0.21 -2.38 16 4 C -0.09 -1.58 5.88 -19.86 -0.12 -1.70 16 5 C -0.11 -1.27 10.01 71.24 0.71 -0.55 16 6 C -0.13 -2.54 9.33 22.27 0.21 -2.34 16 7 C -0.07 -1.57 4.79 -19.87 -0.10 -1.66 16 8 C -0.04 -0.82 2.43 -11.46 -0.03 -0.85 16 9 C -0.10 -2.63 5.23 30.64 0.16 -2.47 16 10 C 0.06 1.59 5.30 86.32 0.46 2.05 16 11 N -0.55 -16.69 4.60 -896.38 -4.13 -20.82 16 12 C 0.07 2.13 5.34 86.30 0.46 2.59 16 13 C 0.06 2.15 6.00 71.98 0.43 2.58 16 14 O -0.39 -20.24 10.27 -148.98 -1.53 -21.77 16 15 C 0.21 12.37 5.69 71.23 0.41 12.77 16 16 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 17 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 18 C 0.01 0.32 5.46 84.66 0.46 0.78 16 19 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 20 Si 0.98 45.68 29.54 68.60 2.03 47.70 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.06 1.43 5.46 86.33 0.47 1.90 16 25 C -0.10 -2.29 5.22 30.65 0.16 -2.13 16 26 C -0.14 -3.40 8.32 22.27 0.19 -3.22 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 29 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.07 0.72 8.09 -2.39 -0.02 0.71 16 34 H 0.13 2.02 7.95 -2.91 -0.02 2.00 16 35 H 0.09 1.62 7.88 -2.38 -0.02 1.60 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.54 7.33 -2.39 -0.02 1.53 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.83 6.12 -2.39 -0.01 1.82 16 40 H 0.08 2.39 7.99 -2.38 -0.02 2.37 16 41 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.42 6.22 -2.38 -0.01 1.40 16 44 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.07 1.75 8.02 -2.39 -0.02 1.73 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 1.45 7.29 -2.38 -0.02 1.44 16 50 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.11 2.95 7.06 -2.91 -0.02 2.93 16 Total: -1.00 -70.92 401.94 2.44 -68.48 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.87 Total: 15.22 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.92 Total: -31.63 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.84 Total: -78.00 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.53 Total: -21.77 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.92 2.44 -68.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934802516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.566 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds