Wall clock time and date at job start Tue Mar 31 2020 11:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 C 1.53004 * 109.47029 * 299.99954 * 3 2 1 5 5 C 1.53003 * 109.46912 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46913 * 299.99850 * 5 3 2 7 7 C 1.53007 * 109.47255 * 300.00047 * 6 5 3 8 8 N 1.46904 * 109.46829 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99623 * 155.00093 * 8 7 6 10 10 C 1.50699 * 109.46960 * 179.97438 * 9 8 7 11 11 C 1.38328 * 119.96230 * 269.97850 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99651 * 10 9 8 25 25 C 1.52993 * 109.46936 * 60.00393 * 7 6 5 26 26 C 1.52999 * 109.47028 * 59.99986 * 3 2 1 27 27 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47012 * 299.99862 * 1 2 3 29 29 H 1.08994 * 109.47298 * 60.00306 * 1 2 3 30 30 H 1.08991 * 109.47008 * 239.99673 * 2 1 3 31 31 H 1.09003 * 109.47032 * 119.99678 * 2 1 3 32 32 H 1.08994 * 109.46680 * 299.99959 * 4 3 2 33 33 H 1.08996 * 109.47029 * 60.00378 * 4 3 2 34 34 H 1.08997 * 109.46852 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.47034 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47012 * 60.00138 * 5 3 2 37 37 H 1.09005 * 109.46784 * 180.02562 * 6 5 3 38 38 H 1.09002 * 109.47420 * 60.00038 * 6 5 3 39 39 H 1.09002 * 109.46899 * 300.00309 * 7 6 5 40 40 H 1.00893 * 110.99971 * 31.04664 * 8 7 6 41 41 H 1.09002 * 109.46748 * 59.99768 * 9 8 7 42 42 H 1.08992 * 109.46853 * 299.99880 * 9 8 7 43 43 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 44 44 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 45 45 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 46 46 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 48 48 H 1.08997 * 109.47382 * 59.99738 * 25 7 6 49 49 H 1.09002 * 109.47135 * 180.02562 * 25 7 6 50 50 H 1.09002 * 109.46682 * 180.02562 * 26 3 2 51 51 H 1.08994 * 109.47226 * 299.99443 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 -1.2493 5 6 3.5700 1.4425 0.0006 6 6 4.0794 0.7215 1.2502 7 6 3.5689 1.4430 2.4992 8 7 4.0585 0.7509 3.6989 9 6 4.1207 1.6664 4.8461 10 6 4.6256 0.9226 6.0556 11 6 3.7313 0.2926 6.9022 12 6 4.1906 -0.3906 8.0133 13 6 5.5450 -0.4512 8.2774 14 6 6.4448 0.1849 7.4326 15 8 7.7761 0.1322 7.6928 16 6 8.1510 -0.4496 8.8499 17 1 7.4123 -0.9195 9.4822 18 6 9.4851 -0.4447 9.2279 19 7 10.3848 0.1280 8.4578 20 14 10.0044 -1.2501 10.8313 21 1 10.3370 -2.6761 10.5839 22 1 11.1969 -0.5505 11.3732 23 1 8.8921 -1.1641 11.8115 24 6 5.9802 0.8709 6.3177 25 6 2.0389 1.4429 2.4985 26 6 1.5299 2.1637 1.2492 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 1.6499 -2.1392 33 1 0.4400 2.1637 -1.2492 34 1 1.8936 3.1912 -1.2495 35 1 3.9333 2.4702 0.0011 36 1 3.9337 0.9286 -0.8891 37 1 5.1695 0.7219 1.2509 38 1 3.7161 -0.3062 1.2503 39 1 3.9322 2.4706 2.4991 40 1 4.9563 0.3232 3.5285 41 1 3.1251 2.0598 5.0514 42 1 4.7968 2.4901 4.6173 43 1 2.6722 0.3343 6.6951 44 1 3.4899 -0.8811 8.6727 45 1 5.9035 -0.9892 9.1425 46 1 11.3180 0.1318 8.7225 47 1 6.6779 1.3636 5.6567 48 1 1.6756 0.4152 2.4985 49 1 1.6752 1.9572 3.3880 50 1 1.8929 3.1915 1.2490 51 1 0.4400 2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116461608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:21 Heat of formation + Delta-G solvation = -49.098142 kcal Electronic energy + Delta-G solvation = -26382.942260 eV Core-core repulsion = 22859.726579 eV Total energy + Delta-G solvation = -3523.215681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96829 -40.66331 -38.59348 -36.88319 -34.32702 -33.71287 -31.95714 -31.49817 -30.81935 -30.20660 -27.52608 -26.91397 -25.23357 -24.47708 -23.40915 -23.17560 -22.16376 -21.52777 -19.51676 -18.95544 -18.73009 -16.88997 -16.73694 -16.48459 -16.18339 -16.09455 -15.81345 -15.77768 -15.44249 -15.27215 -15.05831 -14.64727 -14.29496 -14.10882 -13.82955 -13.67971 -13.42455 -13.32713 -13.20118 -12.96055 -12.88765 -12.73611 -12.59936 -12.44610 -12.28640 -12.21784 -12.14911 -12.06351 -11.95248 -11.81411 -11.41870 -11.18239 -11.03354 -10.87162 -10.80473 -10.72245 -9.71658 -9.31947 -8.97704 -8.47106 -6.15463 0.52526 0.76327 1.34503 1.43993 1.52138 2.17557 2.78859 3.09482 3.32818 3.51896 3.70971 3.82957 3.96906 4.00091 4.10320 4.13531 4.26092 4.33319 4.38341 4.44415 4.48144 4.56620 4.59650 4.63088 4.67374 4.68638 4.74668 4.79074 4.81853 4.86869 5.00109 5.04700 5.08383 5.09135 5.12705 5.13674 5.16955 5.21726 5.30895 5.31632 5.37282 5.38458 5.41884 5.57085 5.61960 5.66275 5.73919 5.74955 5.81106 6.02724 6.13213 6.25570 6.41431 6.97801 7.79171 8.76300 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.002195 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.038152 B =12750.449003 C =13266.606556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.120 4.120 7 C 0.090 3.910 8 N -0.684 5.684 9 C 0.113 3.887 10 C -0.036 4.036 11 C -0.170 4.170 12 C -0.073 4.073 13 C -0.244 4.244 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.196 4.196 25 C -0.102 4.102 26 C -0.105 4.105 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.339 0.661 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.118 0.882 46 H 0.272 0.728 47 H 0.105 0.895 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 2.607 -16.337 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.057 4.057 4 C -0.198 4.198 5 C -0.140 4.140 6 C -0.158 4.158 7 C -0.019 4.019 8 N -0.315 5.315 9 C -0.015 4.015 10 C -0.037 4.037 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.264 4.264 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.216 4.216 25 C -0.140 4.140 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.123 0.877 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.679 2.493 -16.314 26.458 hybrid contribution 1.777 0.183 0.620 1.891 sum -18.902 2.677 -15.694 24.714 Atomic orbital electron populations 1.21871 0.95573 1.01495 1.02137 1.21640 0.96241 0.95746 1.01699 1.20524 0.94359 0.95504 0.95344 1.21890 1.01451 0.99918 0.96557 1.21539 0.95161 1.00375 0.96940 1.21722 0.99711 1.00361 0.94025 1.21581 0.96269 0.95456 0.88626 1.60573 1.33504 1.33029 1.04354 1.20801 1.00811 0.92294 0.87634 1.19570 0.90886 0.97027 0.96212 1.20929 0.99896 1.02089 0.95978 1.21154 0.93665 0.97090 0.97156 1.21300 0.94649 1.07366 1.03059 1.19867 0.84346 0.94482 0.95046 1.83937 1.18928 1.71659 1.39557 1.21812 0.94351 1.35515 0.97202 0.88179 1.26594 0.94340 0.97794 1.03429 1.70184 1.02507 1.43803 1.39553 0.84586 0.78524 0.77972 0.75120 1.18779 1.19590 1.17663 1.20221 0.96080 1.06404 0.98854 1.21495 0.93612 1.01309 0.97621 1.21604 1.00834 0.98600 0.93277 0.93111 0.92496 0.92015 0.92325 0.92108 0.92568 0.91811 0.92788 0.92117 0.91389 0.92750 0.91082 0.94516 0.84340 0.88730 0.94902 0.83918 0.83769 0.86462 0.91887 0.87732 0.91479 0.92583 0.92322 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.21 71.98 0.66 -1.19 16 2 C -0.12 -1.59 4.30 30.60 0.13 -1.46 16 3 C -0.06 -0.76 0.54 -52.18 -0.03 -0.79 16 4 C -0.14 -1.58 8.12 71.98 0.58 -0.99 16 5 C -0.10 -1.52 4.73 30.59 0.14 -1.38 16 6 C -0.12 -2.19 4.92 30.60 0.15 -2.04 16 7 C 0.09 1.80 2.49 44.91 0.11 1.91 16 8 N -0.68 -16.97 6.30 -495.56 -3.12 -20.09 16 9 C 0.11 3.03 5.61 85.56 0.48 3.51 16 10 C -0.04 -1.25 5.39 -19.88 -0.11 -1.36 16 11 C -0.17 -5.47 9.70 22.30 0.22 -5.26 16 12 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 13 C -0.24 -10.88 9.17 22.39 0.21 -10.68 16 14 C 0.11 5.73 6.65 22.58 0.15 5.88 16 15 O -0.23 -14.35 9.76 -22.74 -0.22 -14.57 16 16 C -0.41 -24.43 9.49 67.92 0.64 -23.79 16 17 H 0.10 5.45 5.21 -2.91 -0.02 5.44 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.32 13.67 21.61 0.30 -57.03 16 20 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 C -0.20 -8.52 9.65 22.39 0.22 -8.30 16 25 C -0.10 -1.79 5.15 30.58 0.16 -1.63 16 26 C -0.11 -1.48 4.37 30.58 0.13 -1.35 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.70 6.43 -2.39 -0.02 0.68 16 29 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.99 4.81 -2.39 -0.01 0.98 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.64 6.43 -2.39 -0.02 0.63 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.05 8.12 -2.38 -0.02 1.03 16 38 H 0.07 1.35 6.43 -2.39 -0.02 1.34 16 39 H 0.04 0.77 7.80 -2.39 -0.02 0.76 16 40 H 0.34 9.15 8.34 -89.70 -0.75 8.41 16 41 H 0.09 2.20 7.38 -2.39 -0.02 2.19 16 42 H 0.03 0.90 8.00 -2.39 -0.02 0.88 16 43 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 45 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 46 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 47 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 48 H 0.07 1.27 6.43 -2.39 -0.02 1.26 16 49 H 0.06 1.01 7.45 -2.39 -0.02 1.00 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.93 6.43 -2.39 -0.02 0.92 16 Total: -1.00 -68.32 386.41 3.69 -64.63 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.17 Total: 33.80 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 4.54 Total: -52.17 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.83 Total: -77.12 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.32 3.69 -64.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116461608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.530 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds