Wall clock time and date at job start Tue Mar 31 2020 12:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52993 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47302 * 179.97438 * 4 3 2 6 6 C 1.53111 * 109.52355 * 65.31739 * 5 4 3 7 7 C 1.53045 * 109.27858 * 177.55907 * 6 5 4 8 8 N 1.46842 * 109.52190 * 300.81925 * 7 6 5 9 9 C 1.46899 * 110.99918 * 185.83618 * 8 7 6 10 10 C 1.50696 * 109.47330 * 169.99934 * 9 8 7 11 11 C 1.38304 * 119.93112 * 269.73015 * 10 9 8 12 12 C 1.38105 * 120.06471 * 179.72268 * 11 10 9 13 13 C 1.38881 * 119.93314 * 0.54712 * 12 11 10 14 14 O 1.35751 * 120.06867 * 179.74962 * 13 12 11 15 15 C 1.34830 * 116.99865 * 174.44298 * 14 13 12 16 16 H 1.08001 * 120.00024 * 5.05651 * 15 14 13 17 17 C 1.38654 * 119.99812 * 185.05152 * 15 14 13 18 18 N 1.31553 * 120.00225 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46820 * 90.00031 * 19 17 15 21 21 H 1.48492 * 109.46992 * 210.00041 * 19 17 15 22 22 H 1.48496 * 109.47046 * 330.00294 * 19 17 15 23 23 C 1.38881 * 119.86173 * 359.72627 * 13 12 11 24 24 C 1.38098 * 119.92943 * 359.97438 * 23 13 12 25 25 C 1.46845 * 111.19901 * 61.74160 * 8 7 6 26 26 C 1.53039 * 109.52278 * 298.25621 * 25 8 7 27 27 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47516 * 299.99831 * 1 2 3 29 29 H 1.08993 * 109.47279 * 60.00338 * 1 2 3 30 30 H 1.08990 * 109.47228 * 239.99855 * 2 1 3 31 31 H 1.08999 * 109.46662 * 119.99372 * 2 1 3 32 32 H 1.09007 * 109.47326 * 59.99650 * 3 2 1 33 33 H 1.09006 * 109.47169 * 299.99844 * 3 2 1 34 34 H 1.08999 * 109.47363 * 59.99309 * 4 3 2 35 35 H 1.09006 * 109.46925 * 300.00046 * 4 3 2 36 36 H 1.08995 * 109.57543 * 305.15316 * 5 4 3 37 37 H 1.08998 * 109.50705 * 57.61836 * 6 5 4 38 38 H 1.09000 * 109.50077 * 297.49990 * 6 5 4 39 39 H 1.08994 * 109.46117 * 180.80201 * 7 6 5 40 40 H 1.09000 * 109.45574 * 60.83759 * 7 6 5 41 41 H 1.08997 * 109.47461 * 290.00233 * 9 8 7 42 42 H 1.09004 * 109.47017 * 49.99795 * 9 8 7 43 43 H 1.07992 * 119.96741 * 0.02562 * 11 10 9 44 44 H 1.07997 * 120.03064 * 180.27228 * 12 11 10 45 45 H 0.96992 * 120.00145 * 179.97438 * 18 17 15 46 46 H 1.07992 * 120.03632 * 179.97438 * 23 13 12 47 47 H 1.08006 * 119.96818 * 180.02562 * 24 23 13 48 48 H 1.09000 * 109.46242 * 58.27012 * 25 8 7 49 49 H 1.09003 * 109.46487 * 178.24859 * 25 8 7 50 50 H 1.09003 * 109.50430 * 179.12001 * 26 25 8 51 51 H 1.08993 * 109.50512 * 299.19581 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 3.6817 3.5692 1.3107 7 6 4.2465 4.9915 1.3302 8 7 5.7089 4.9404 1.2085 9 6 6.2970 6.2778 1.3623 10 6 7.7947 6.1578 1.4778 11 6 8.3817 6.0151 2.7219 12 6 9.7536 5.8992 2.8305 13 6 10.5447 5.9373 1.6897 14 8 11.8939 5.8286 1.7936 15 6 12.5927 5.7574 0.6428 16 1 12.0861 5.8696 -0.3044 17 6 13.9617 5.5401 0.6754 18 7 14.5787 5.4030 1.8291 19 14 14.9298 5.4407 -0.9191 20 1 15.4046 6.7966 -1.2953 21 1 16.0968 4.5412 -0.7343 22 1 14.0577 4.9054 -1.9952 23 6 9.9527 6.0863 0.4422 24 6 8.5798 6.1955 0.3397 25 6 6.1149 4.3303 -0.0640 26 6 5.6059 2.8883 -0.1251 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8890 35 1 3.9329 0.9289 0.8909 36 1 3.6444 3.4260 -0.8402 37 1 4.0849 3.0060 2.1523 38 1 2.5949 3.6081 1.3853 39 1 3.9768 5.4765 2.2683 40 1 3.8321 5.5582 0.4963 41 1 6.0472 6.8867 0.4934 42 1 5.8997 6.7481 2.2618 43 1 7.7663 5.9895 3.6089 44 1 10.2110 5.7834 3.8019 45 1 15.5363 5.2507 1.8519 46 1 10.5652 6.1167 -0.4467 47 1 8.1187 6.3110 -0.6301 48 1 5.6919 4.9001 -0.8913 49 1 7.2024 4.3349 -0.1384 50 1 5.8940 2.4407 -1.0763 51 1 6.0400 2.3142 0.6934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:01 Heat of formation + Delta-G solvation = -33.978232 kcal Electronic energy + Delta-G solvation = -26085.297173 eV Core-core repulsion = 22562.737141 eV Total energy + Delta-G solvation = -3522.560032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.59404 -38.78049 -36.95217 -35.92161 -33.79817 -32.27352 -30.93525 -30.49952 -30.09353 -28.61412 -25.94298 -25.21029 -23.60545 -23.21428 -21.90076 -21.64269 -20.93199 -20.23813 -19.67638 -17.94486 -16.90630 -15.99602 -15.80432 -15.11633 -14.98510 -14.57237 -14.45110 -14.34483 -14.28230 -13.86522 -13.72931 -13.50839 -13.33583 -13.23450 -12.85782 -12.64831 -12.57744 -12.44598 -11.97836 -11.79318 -11.59808 -11.50255 -11.44346 -11.31143 -11.22755 -11.15785 -10.86587 -10.71215 -10.66715 -10.61381 -10.55086 -10.40907 -10.21992 -10.00049 -9.30440 -8.81418 -8.18744 -8.09435 -7.13644 -6.43096 -4.01859 2.25579 2.32211 3.13232 3.14340 3.19123 3.97851 4.05838 4.41669 4.57312 4.66786 4.69924 4.78803 4.89764 4.94577 5.10949 5.15581 5.16387 5.30498 5.31710 5.33840 5.41003 5.44114 5.48172 5.51660 5.55786 5.58819 5.63047 5.67536 5.74068 5.78468 5.82671 5.84806 5.90544 5.92823 5.95833 5.98950 6.05421 6.11067 6.18261 6.23446 6.25283 6.40920 6.46927 6.74547 6.93847 7.06211 7.21927 7.24834 7.33217 7.44420 7.48081 7.86779 8.02063 9.02631 9.73590 10.75035 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.002247 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.659545 B =12456.291414 C =13265.216775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.088 4.088 6 C -0.110 4.110 7 C 0.055 3.945 8 N -0.531 5.531 9 C 0.113 3.887 10 C -0.177 4.177 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.066 4.066 25 C 0.053 3.947 26 C -0.111 4.111 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.025 0.975 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.180 -5.514 -4.060 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.106 4.106 6 C -0.148 4.148 7 C -0.073 4.073 8 N -0.256 5.256 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.074 4.074 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.143 0.857 47 H 0.120 0.880 48 H 0.043 0.957 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.610 -5.858 -3.407 24.563 hybrid contribution 0.223 0.475 -1.556 1.642 sum -23.387 -5.383 -4.962 24.506 Atomic orbital electron populations 1.21781 0.96101 1.01435 1.01711 1.21548 0.95657 0.97222 1.01949 1.21666 0.95708 0.96446 1.01974 1.21635 0.95042 0.96414 1.02066 1.21216 0.95925 0.95701 0.97789 1.21663 0.99498 0.95594 0.97998 1.22073 0.88086 0.96824 1.00330 1.61967 1.07770 1.21620 1.34237 1.20776 0.92101 0.88433 1.00010 1.19069 0.93326 1.11946 0.93467 1.20448 0.93267 0.97209 0.96246 1.20217 0.92806 1.11281 0.97027 1.19393 0.84999 0.92296 0.93150 1.83980 1.12130 1.78635 1.33491 1.21310 0.90110 1.51178 0.84139 0.89139 1.25279 0.95910 0.96504 0.98849 1.70035 1.10140 1.45124 1.24502 0.85726 0.79157 0.78529 0.80098 1.19917 1.20262 1.19233 1.21111 0.94817 1.11492 0.97934 1.20586 0.93172 0.98094 0.96672 1.22140 1.01731 0.94362 0.89201 1.21636 0.94629 0.96692 1.01941 0.92946 0.92806 0.92880 0.92198 0.92072 0.91811 0.92306 0.92155 0.91839 0.91863 0.91099 0.91828 0.91085 0.95555 0.95216 0.90944 0.87121 0.86616 0.92059 0.85707 0.88025 0.95710 0.89551 0.91901 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.87 4.98 -26.73 -0.13 -1.00 16 4 C -0.11 -0.93 4.69 -26.73 -0.13 -1.06 16 5 C -0.09 -0.82 2.25 -90.50 -0.20 -1.03 16 6 C -0.11 -1.04 5.08 -26.65 -0.14 -1.17 16 7 C 0.05 0.59 5.46 -3.83 -0.02 0.57 16 8 N -0.53 -7.01 4.65 -236.12 -1.10 -8.11 16 9 C 0.11 1.58 5.12 -4.98 -0.03 1.56 16 10 C -0.18 -3.04 4.89 -104.57 -0.51 -3.55 16 11 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 12 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 13 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 15 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 19 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 24 C -0.07 -1.22 7.86 -39.61 -0.31 -1.53 16 25 C 0.05 0.70 5.15 -3.83 -0.02 0.68 16 26 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.46 6.64 -51.93 -0.34 0.11 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.51 6.71 -51.93 -0.35 0.16 16 39 H 0.07 0.71 8.01 -51.93 -0.42 0.30 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 47 H 0.10 1.63 7.95 -52.48 -0.42 1.21 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 1.31 5.74 -51.93 -0.30 1.02 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -29.77 396.43 -11.13 -40.90 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -9.12 Total: 2.57 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.62 Total: -27.09 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.34 Total: -32.82 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.77 -11.13 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds