Wall clock time and date at job start Tue Mar 31 2020 11:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00542 * 2 1 4 4 C 1.38730 * 120.05677 * 89.99585 * 3 2 1 5 5 C 1.50700 * 120.02875 * 359.96022 * 4 3 2 6 6 C 1.38141 * 119.94150 * 179.97438 * 4 3 2 7 7 C 1.38270 * 120.06034 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.94660 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.47100 * 89.99847 * 8 7 6 10 10 C 1.46898 * 111.00025 * 169.99993 * 9 8 7 11 11 C 1.50703 * 109.47069 * 184.01426 * 10 9 8 12 12 H 1.07997 * 120.00130 * 5.37238 * 11 10 9 13 13 C 1.37874 * 119.99704 * 185.37009 * 11 10 9 14 14 N 1.31523 * 120.00231 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47128 * 89.99605 * 15 13 11 17 17 H 1.48498 * 109.47452 * 210.00045 * 15 13 11 18 18 H 1.48502 * 109.46737 * 330.00277 * 15 13 11 19 19 C 1.46898 * 111.00145 * 293.95684 * 9 8 7 20 20 C 1.54270 * 110.02933 * 268.07147 * 19 9 8 21 21 C 1.54960 * 104.16083 * 217.13418 * 20 19 9 22 22 C 1.54889 * 102.77663 * 37.89393 * 21 20 19 23 23 C 1.53870 * 110.03495 * 150.85849 * 19 9 8 24 24 C 1.38270 * 120.10562 * 0.27460 * 7 6 4 25 25 C 1.38142 * 120.05756 * 359.45026 * 24 7 6 26 26 C 1.50699 * 120.02802 * 180.27313 * 25 24 7 27 27 H 1.09002 * 109.47109 * 300.00824 * 1 2 3 28 28 H 1.09007 * 109.46561 * 60.00095 * 1 2 3 29 29 H 1.08993 * 109.47328 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46759 * 270.02094 * 5 4 3 31 31 H 1.09000 * 109.46877 * 30.01645 * 5 4 3 32 32 H 1.08997 * 109.47062 * 150.02491 * 5 4 3 33 33 H 1.08004 * 119.97297 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.46820 * 210.00183 * 8 7 6 35 35 H 1.08996 * 109.46993 * 330.00321 * 8 7 6 36 36 H 1.09001 * 109.46928 * 304.01434 * 10 9 8 37 37 H 1.09001 * 109.47144 * 64.01196 * 10 9 8 38 38 H 0.96996 * 119.99583 * 180.02562 * 14 13 11 39 39 H 1.08993 * 110.02045 * 29.46330 * 19 9 8 40 40 H 1.08999 * 110.48550 * 335.78707 * 20 19 9 41 41 H 1.09005 * 110.48278 * 98.42508 * 20 19 9 42 42 H 1.09000 * 110.72399 * 279.57307 * 21 20 19 43 43 H 1.09003 * 110.92372 * 156.30075 * 21 20 19 44 44 H 1.09004 * 110.48788 * 203.40553 * 22 21 20 45 45 H 1.08991 * 110.60417 * 80.81408 * 22 21 20 46 46 H 1.08998 * 110.03551 * 238.56594 * 23 19 9 47 47 H 1.09001 * 110.03588 * 359.94678 * 23 19 9 48 48 H 1.07997 * 119.96719 * 179.70735 * 24 7 6 49 49 H 1.09000 * 109.47373 * 270.27461 * 26 25 24 50 50 H 1.09001 * 109.47036 * 30.28013 * 26 25 24 51 51 H 1.09001 * 109.47057 * 150.27176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 2.3615 1.8300 1.2008 5 6 2.0194 1.1608 2.5070 6 6 2.9892 3.0605 1.1980 7 6 3.3037 3.6749 -0.0001 8 6 3.9890 5.0171 -0.0002 9 7 5.4451 4.8233 0.0006 10 6 6.1452 6.0926 -0.2376 11 6 7.6280 5.8392 -0.3280 12 1 8.0052 4.8274 -0.3064 13 6 8.5030 6.8989 -0.4383 14 7 8.0436 8.1310 -0.4651 15 14 10.3411 6.5850 -0.5497 16 1 10.7323 6.4356 -1.9744 17 1 11.0758 7.7286 0.0481 18 1 10.6763 5.3409 0.1887 19 6 5.8930 4.2022 1.2542 20 6 6.2744 5.2923 2.2771 21 6 7.5017 4.7039 3.0181 22 6 8.2713 3.9804 1.8853 23 6 7.1618 3.3682 1.0054 24 6 2.9857 3.0622 -1.1982 25 6 2.3631 1.8291 -1.2009 26 6 2.0223 1.1591 -2.5070 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.0214 1.4664 2.8212 31 1 2.0443 0.0787 2.3783 32 1 2.7448 1.4534 3.2660 33 1 3.2354 3.5428 2.1325 34 1 3.6970 5.5741 -0.8905 35 1 3.6963 5.5745 0.8895 36 1 5.7940 6.5316 -1.1715 37 1 5.9434 6.7788 0.5849 38 1 8.6593 8.8765 -0.5431 39 1 5.1037 3.5694 1.6598 40 1 6.5443 6.2168 1.7666 41 1 5.4541 5.4655 2.9737 42 1 7.1865 3.9959 3.7845 43 1 8.1103 5.4965 3.4535 44 1 8.9079 3.1969 2.2965 45 1 8.8654 4.6909 1.3107 46 1 6.9887 2.3306 1.2911 47 1 7.4449 3.4234 -0.0458 48 1 3.2281 3.5463 -2.1327 49 1 1.0248 1.4646 -2.8227 50 1 2.7488 1.4510 -3.2654 51 1 2.0471 0.0771 -2.3777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138431105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:42 Heat of formation + Delta-G solvation = -17.387889 kcal Electronic energy + Delta-G solvation = -28108.663265 eV Core-core repulsion = 24586.822644 eV Total energy + Delta-G solvation = -3521.840621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35631 -40.26556 -38.30730 -35.82232 -34.67426 -34.49931 -32.50483 -29.58086 -29.35939 -28.88408 -28.58352 -27.57196 -26.89759 -25.27458 -23.60903 -21.92402 -21.58274 -21.27076 -19.78540 -18.67196 -18.53886 -17.53790 -16.87207 -16.66050 -16.51221 -16.15714 -15.62858 -15.33756 -15.01411 -14.88160 -14.74394 -14.35841 -14.34775 -14.05849 -13.98224 -13.83917 -13.59666 -13.27771 -13.18768 -12.95426 -12.83541 -12.68693 -12.64235 -12.25632 -12.20569 -12.12703 -12.02208 -11.89098 -11.73759 -11.60612 -11.56058 -11.07915 -10.95940 -10.81124 -10.64767 -10.48449 -9.47190 -9.32240 -8.79330 -8.08528 -6.10483 0.24628 0.41496 1.41171 1.43299 1.51798 2.43085 2.50647 2.99957 3.26829 3.48994 3.82651 3.85695 3.89349 3.97191 4.03183 4.29464 4.34972 4.36970 4.47814 4.51946 4.54052 4.56775 4.67902 4.70637 4.75585 4.77672 4.78235 4.78565 4.79526 4.86584 4.90629 4.94583 4.98590 5.03372 5.14542 5.19928 5.20741 5.24821 5.31726 5.37098 5.38943 5.48594 5.57743 5.59459 5.74271 5.74776 5.84264 5.85121 5.92689 6.21850 6.47920 6.64255 6.78455 7.05486 7.55630 9.03455 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.003640 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.743107 B = 7691.424893 C = 8241.805997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.076 3.924 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.114 4.114 7 C -0.068 4.068 8 C 0.092 3.908 9 N -0.530 5.530 10 C 0.201 3.799 11 C -0.498 4.498 12 H 0.091 0.909 13 C 0.007 3.993 14 N -0.939 5.939 15 Si 0.937 3.063 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.254 1.254 19 C 0.094 3.906 20 C -0.165 4.165 21 C -0.105 4.105 22 C -0.127 4.127 23 C -0.102 4.102 24 C -0.105 4.105 25 C -0.106 4.106 26 C -0.106 4.106 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.032 0.968 36 H -0.008 1.008 37 H -0.012 1.012 38 H 0.257 0.743 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.124 0.876 49 H 0.080 0.920 50 H 0.070 0.930 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.541 -15.262 4.322 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.032 3.968 4 C -0.105 4.105 5 C -0.162 4.162 6 C -0.133 4.133 7 C -0.068 4.068 8 C -0.036 4.036 9 N -0.253 5.253 10 C 0.075 3.925 11 C -0.536 4.536 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.581 5.581 15 Si 0.764 3.236 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.178 1.178 19 C -0.015 4.015 20 C -0.203 4.203 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.107 4.107 26 C -0.162 4.162 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.010 0.990 37 H 0.005 0.995 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.142 0.858 49 H 0.099 0.901 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.295 -15.591 3.911 21.511 hybrid contribution 0.818 1.567 0.250 1.785 sum -13.477 -14.024 4.161 19.890 Atomic orbital electron populations 1.23164 0.77708 1.04453 1.01043 1.85940 1.21202 1.24648 1.94393 1.18400 0.99786 0.86953 0.91658 1.20329 0.99673 0.94456 0.96045 1.20696 1.02398 1.00648 0.92497 1.20890 0.99732 0.95093 0.97577 1.19792 0.97215 0.96200 0.93636 1.20974 0.88898 0.93230 1.00471 1.62360 1.02457 1.26448 1.34054 1.19595 0.93793 0.85767 0.93336 1.21928 0.91143 0.94145 1.46431 0.89142 1.25636 1.02342 0.94929 0.96031 1.70089 1.35755 0.98982 1.53296 0.85881 0.81464 0.78127 0.78173 1.20830 1.21741 1.17769 1.22225 0.96796 0.94628 0.87806 1.23185 0.97722 1.01440 0.97980 1.22240 0.96159 0.98864 0.97007 1.22501 0.97807 0.99267 0.96885 1.22156 0.94492 0.97177 1.00136 1.20871 0.98853 0.94757 0.97907 1.20361 0.99782 0.94431 0.96111 1.20688 1.02324 1.00618 0.92620 0.93216 0.93331 0.86867 0.90156 0.90933 0.90835 0.85449 0.91308 0.94982 0.99031 0.99450 0.93431 0.90132 0.90559 0.92997 0.90569 0.93150 0.91690 0.92322 0.92245 0.92123 0.85808 0.90127 0.91137 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.13 113.37 1.26 1.70 16 2 O -0.34 -7.73 8.51 -92.47 -0.79 -8.52 16 3 C 0.08 1.94 5.67 22.51 0.13 2.07 16 4 C -0.10 -2.63 5.89 -19.77 -0.12 -2.75 16 5 C -0.11 -2.02 9.79 71.24 0.70 -1.32 16 6 C -0.11 -3.19 7.61 22.25 0.17 -3.02 16 7 C -0.07 -2.12 5.01 -19.85 -0.10 -2.22 16 8 C 0.09 3.32 5.11 85.56 0.44 3.76 16 9 N -0.53 -22.24 4.37 -875.84 -3.82 -26.07 16 10 C 0.20 10.23 4.20 85.56 0.36 10.58 16 11 C -0.50 -26.40 5.83 25.60 0.15 -26.25 16 12 H 0.09 4.65 3.29 -2.91 -0.01 4.64 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.94 -55.65 13.29 21.45 0.28 -55.36 16 15 Si 0.94 43.67 28.62 68.60 1.96 45.64 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.25 -11.10 6.68 99.48 0.66 -10.43 16 19 C 0.09 3.55 2.71 45.64 0.12 3.67 16 20 C -0.16 -6.42 5.73 31.70 0.18 -6.24 16 21 C -0.10 -3.64 6.91 31.91 0.22 -3.42 16 22 C -0.13 -4.72 6.18 31.67 0.20 -4.53 16 23 C -0.10 -3.85 5.64 31.32 0.18 -3.67 16 24 C -0.11 -3.11 9.35 22.25 0.21 -2.91 16 25 C -0.11 -2.79 5.89 -19.77 -0.12 -2.91 16 26 C -0.11 -2.18 9.79 71.24 0.70 -1.48 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.36 7.53 -2.39 -0.02 1.34 16 32 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.13 3.34 7.34 -2.91 -0.02 3.31 16 34 H 0.07 2.52 7.95 -2.39 -0.02 2.50 16 35 H 0.03 1.14 8.06 -2.39 -0.02 1.12 16 36 H -0.01 -0.47 8.05 -2.39 -0.02 -0.49 16 37 H -0.01 -0.65 5.78 -2.39 -0.01 -0.66 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.08 2.76 4.67 -2.39 -0.01 2.75 16 40 H 0.08 3.67 4.11 -2.39 -0.01 3.66 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.06 2.55 4.56 -2.39 -0.01 2.54 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.06 2.61 5.84 -2.39 -0.01 2.60 16 48 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 51 H 0.07 1.45 7.53 -2.39 -0.02 1.43 16 Total: -1.00 -62.10 382.27 3.64 -58.46 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.87 Total: 23.91 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 5.14 Total: -38.05 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -3.54 Total: -81.43 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.79 Total: -8.52 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.96 Total: 45.64 kcal Total: -62.10 3.64 -58.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138431105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.073 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds