Wall clock time and date at job start Tue Mar 31 2020 11:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38125 * 119.93889 * 179.70405 * 4 3 2 6 6 C 1.50710 * 119.96910 * 180.29534 * 5 4 3 7 7 C 1.38289 * 120.05977 * 0.58874 * 5 4 3 8 8 C 1.50701 * 119.94590 * 179.70482 * 7 5 4 9 9 N 1.46895 * 109.46975 * 269.98208 * 8 7 5 10 10 C 1.46851 * 110.99997 * 294.20551 * 9 8 7 11 11 C 1.53038 * 109.52405 * 174.16283 * 10 9 8 12 12 C 1.53113 * 109.27639 * 59.18237 * 11 10 9 13 13 C 1.50704 * 109.57353 * 182.40753 * 12 11 10 14 14 H 1.08003 * 120.00077 * 119.71295 * 13 12 11 15 15 C 1.37872 * 120.00052 * 299.71386 * 13 12 11 16 16 N 1.31515 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46930 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46921 * 119.99930 * 17 15 13 20 20 H 1.48493 * 109.47353 * 240.00320 * 17 15 13 21 21 C 1.53118 * 109.16275 * 302.34398 * 12 11 10 22 22 C 1.46845 * 110.99967 * 170.00289 * 9 8 7 23 23 C 1.38241 * 120.10753 * 359.68484 * 7 5 4 24 24 C 1.50698 * 119.97073 * 180.02562 * 23 7 5 25 25 C 1.38169 * 120.05726 * 0.02562 * 23 7 5 26 26 C 1.50696 * 120.02655 * 179.97438 * 25 23 7 27 27 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 31 31 H 1.08997 * 109.46734 * 270.29619 * 6 5 4 32 32 H 1.09004 * 109.46976 * 30.29771 * 6 5 4 33 33 H 1.09000 * 109.46881 * 150.29450 * 6 5 4 34 34 H 1.09001 * 109.47018 * 29.97949 * 8 7 5 35 35 H 1.08996 * 109.46847 * 149.97587 * 8 7 5 36 36 H 1.09001 * 109.46345 * 294.18478 * 10 9 8 37 37 H 1.09001 * 109.45825 * 54.15063 * 10 9 8 38 38 H 1.09001 * 109.50183 * 299.24038 * 11 10 9 39 39 H 1.08997 * 109.53310 * 179.14197 * 11 10 9 40 40 H 1.08999 * 109.52332 * 62.25090 * 12 11 10 41 41 H 0.96999 * 120.00182 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.50468 * 297.71629 * 21 12 11 43 43 H 1.09003 * 109.53442 * 177.61708 * 21 12 11 44 44 H 1.09001 * 109.45907 * 305.84906 * 22 9 8 45 45 H 1.08998 * 109.46519 * 65.82844 * 22 9 8 46 46 H 1.09002 * 109.47331 * 269.97717 * 24 23 7 47 47 H 1.08999 * 109.47444 * 29.97823 * 24 23 7 48 48 H 1.09005 * 109.47403 * 149.97656 * 24 23 7 49 49 H 1.09005 * 109.47438 * 270.02298 * 26 25 23 50 50 H 1.09002 * 109.47361 * 30.02164 * 26 25 23 51 51 H 1.09000 * 109.47236 * 150.02372 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6047 0.0005 6 6 1.1021 4.8698 0.0011 7 6 3.3021 3.6757 0.0001 8 6 3.9863 5.0185 0.0001 9 7 4.2085 5.4548 -1.3848 10 6 5.1616 4.5712 -2.0684 11 6 5.2578 4.9663 -3.5438 12 6 5.7183 6.4228 -3.6480 13 6 5.7585 6.8372 -5.0964 14 1 5.1444 7.6561 -5.4411 15 6 6.5792 6.1709 -5.9816 16 7 7.3266 5.1734 -5.5621 17 14 6.6285 6.6841 -7.7770 18 1 5.7010 7.8238 -7.9917 19 1 8.0093 7.0957 -8.1364 20 1 6.2147 5.5412 -8.6301 21 6 4.7350 7.3165 -2.8872 22 6 4.6540 6.8533 -1.4309 23 6 4.0561 2.5170 0.0000 24 6 5.5609 2.5980 0.0001 25 6 3.4311 1.2847 -0.0001 26 6 4.2537 0.0221 -0.0008 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2129 2.3204 -0.0106 31 1 0.9043 5.1750 -1.0265 32 1 0.1577 4.6911 0.5152 33 1 1.6520 5.6583 0.5149 34 1 3.3583 5.7462 0.5140 35 1 4.9441 4.9381 0.5140 36 1 6.1426 4.6652 -1.6026 37 1 4.8202 3.5390 -1.9904 38 1 4.2801 4.8592 -4.0136 39 1 5.9765 4.3204 -4.0480 40 1 6.7127 6.5224 -3.2130 41 1 7.9042 4.7049 -6.1847 42 1 3.7491 7.2465 -3.3467 43 1 5.0800 8.3500 -2.9218 44 1 3.9438 7.4786 -0.8899 45 1 5.6374 6.9366 -0.9682 46 1 5.9238 2.6172 -1.0275 47 1 5.8758 3.5064 0.5137 48 1 5.9715 1.7290 0.5143 49 1 4.4521 -0.2819 -1.0286 50 1 5.1978 0.2031 0.5131 51 1 3.7063 -0.7684 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138729962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:54 Heat of formation + Delta-G solvation = -22.318092 kcal Electronic energy + Delta-G solvation = -27946.227917 eV Core-core repulsion = 24424.173506 eV Total energy + Delta-G solvation = -3522.054411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56375 -38.74915 -37.34777 -34.49310 -33.94903 -32.11318 -30.56512 -29.72659 -29.14976 -28.10262 -27.28406 -25.95794 -24.62908 -23.93755 -22.02315 -21.59197 -20.32453 -19.83274 -18.54462 -17.25285 -16.79484 -16.38760 -15.87997 -15.38145 -15.04793 -14.54548 -14.43581 -14.20664 -13.81402 -13.60645 -13.23573 -13.09042 -12.88023 -12.87312 -12.73075 -12.68402 -12.22229 -12.20773 -12.10597 -11.82654 -11.76942 -11.66687 -11.33471 -11.06645 -10.94620 -10.85686 -10.71044 -10.56711 -10.47565 -10.29960 -10.12185 -9.90627 -9.36370 -8.91133 -8.61382 -8.36216 -8.24808 -7.89571 -7.57796 -5.93055 -3.97950 1.43645 1.53934 3.24924 3.32809 3.40883 3.44957 3.74050 4.48632 4.66052 4.76792 4.83420 4.96798 5.00531 5.02073 5.14718 5.21706 5.28576 5.35125 5.37332 5.53636 5.58193 5.65810 5.68235 5.75515 5.79087 5.82633 5.84084 5.92352 5.95743 6.00607 6.11747 6.14785 6.17726 6.30914 6.38822 6.42724 6.48431 6.60721 6.68958 6.71515 6.87515 6.91655 6.92908 7.13602 7.23755 7.44107 7.51384 7.68921 7.77510 7.89841 8.11025 8.22109 8.53652 9.05890 9.66197 11.13058 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.003478 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.752640 B = 8048.426391 C = 8511.862799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.126 3.874 4 C -0.214 4.214 5 C -0.029 4.029 6 C -0.112 4.112 7 C -0.101 4.101 8 C 0.090 3.910 9 N -0.526 5.526 10 C 0.052 3.948 11 C -0.104 4.104 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.105 4.105 22 C 0.060 3.940 23 C -0.035 4.035 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.104 4.104 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -7.810 15.160 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.030 4.030 6 C -0.168 4.168 7 C -0.102 4.102 8 C -0.037 4.037 9 N -0.251 5.251 10 C -0.075 4.075 11 C -0.142 4.142 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.143 4.143 22 C -0.067 4.067 23 C -0.035 4.035 24 C -0.186 4.186 25 C -0.126 4.126 26 C -0.160 4.160 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.031 -8.140 14.839 20.203 hybrid contribution 0.453 0.378 -0.663 0.887 sum -10.578 -7.762 14.176 19.316 Atomic orbital electron populations 1.22997 0.78896 1.03478 1.01258 1.86030 1.20898 1.27133 1.89000 1.18691 0.91632 0.83893 0.97689 1.20953 0.99422 0.91788 1.11069 1.19427 0.93138 0.94361 0.96048 1.20810 0.98245 0.94753 1.02987 1.19343 0.92667 0.94401 1.03762 1.21037 0.98221 0.93138 0.91311 1.62045 1.47918 1.02644 1.12454 1.22588 0.91689 0.95749 0.97482 1.21654 1.00845 1.00801 0.90919 1.18676 0.93062 0.90873 0.94404 1.21256 1.23669 1.16078 0.93685 0.92795 1.24960 0.95497 0.95091 0.98467 1.69887 1.26796 1.21871 1.34538 0.86603 0.77656 0.78489 0.85638 1.19863 1.21180 1.21115 1.21664 1.01103 0.98860 0.92677 1.22121 0.97041 0.88503 0.99077 1.19389 0.95854 0.91189 0.97104 1.21273 0.91083 1.02546 1.03702 1.18944 0.90415 0.95507 1.07761 1.20626 0.98811 0.94365 1.02239 0.92935 0.92735 0.88591 0.85904 0.90337 0.92468 0.91168 0.90559 0.94457 0.96044 0.91676 0.94066 0.89132 0.96258 0.93230 0.92573 0.93318 0.92592 0.95935 0.89409 0.91214 0.91440 0.91488 0.91498 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.97 9.54 -19.42 -0.19 -4.15 16 3 C 0.13 1.75 6.66 -39.22 -0.26 1.49 16 4 C -0.21 -2.81 8.69 -39.43 -0.34 -3.16 16 5 C -0.03 -0.40 5.88 -104.64 -0.62 -1.02 16 6 C -0.11 -1.31 9.60 36.01 0.35 -0.96 16 7 C -0.10 -1.50 4.89 -104.60 -0.51 -2.01 16 8 C 0.09 1.34 4.50 -4.98 -0.02 1.32 16 9 N -0.53 -9.35 4.65 -236.12 -1.10 -10.45 16 10 C 0.05 1.02 3.68 -3.83 -0.01 1.01 16 11 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 12 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 13 C -0.51 -14.11 8.56 -34.44 -0.29 -14.41 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.58 11.37 55.43 0.63 -24.95 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.11 -2.22 5.32 -26.65 -0.14 -2.36 16 22 C 0.06 1.08 5.46 -3.83 -0.02 1.06 16 23 C -0.03 -0.51 4.86 -104.65 -0.51 -1.01 16 24 C -0.13 -1.73 7.76 36.00 0.28 -1.45 16 25 C -0.13 -1.79 5.89 -104.48 -0.62 -2.40 16 26 C -0.10 -1.25 9.38 36.00 0.34 -0.91 16 27 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 28 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 34 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 35 H 0.04 0.54 5.92 -51.93 -0.31 0.24 16 36 H 0.02 0.43 7.65 -51.93 -0.40 0.03 16 37 H 0.07 1.25 4.57 -51.93 -0.24 1.01 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 1.29 5.77 -51.93 -0.30 0.99 16 47 H 0.07 0.91 5.94 -51.93 -0.31 0.60 16 48 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 51 H 0.06 0.74 7.53 -51.93 -0.39 0.35 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -29.93 376.04 -10.20 -40.13 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.37 Total: 0.86 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -1.82 Total: -23.62 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.47 Total: -35.39 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.19 Total: -4.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.93 -10.20 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138729962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.813 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds