Wall clock time and date at job start Tue Mar 31 2020 11:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38125 * 119.93889 * 179.70405 * 4 3 2 6 6 C 1.50710 * 119.96910 * 180.29534 * 5 4 3 7 7 C 1.38289 * 120.05977 * 0.58874 * 5 4 3 8 8 C 1.50701 * 119.94590 * 179.70482 * 7 5 4 9 9 N 1.46895 * 109.46975 * 269.98208 * 8 7 5 10 10 C 1.46851 * 110.99997 * 294.20551 * 9 8 7 11 11 C 1.53038 * 109.52405 * 174.16283 * 10 9 8 12 12 C 1.53113 * 109.27639 * 59.18237 * 11 10 9 13 13 C 1.50704 * 109.57353 * 182.40753 * 12 11 10 14 14 H 1.08003 * 120.00077 * 119.71295 * 13 12 11 15 15 C 1.37872 * 120.00052 * 299.71386 * 13 12 11 16 16 N 1.31515 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46930 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46921 * 119.99930 * 17 15 13 20 20 H 1.48493 * 109.47353 * 240.00320 * 17 15 13 21 21 C 1.53118 * 109.16275 * 302.34398 * 12 11 10 22 22 C 1.46845 * 110.99967 * 170.00289 * 9 8 7 23 23 C 1.38241 * 120.10753 * 359.68484 * 7 5 4 24 24 C 1.50698 * 119.97073 * 180.02562 * 23 7 5 25 25 C 1.38169 * 120.05726 * 0.02562 * 23 7 5 26 26 C 1.50696 * 120.02655 * 179.97438 * 25 23 7 27 27 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 31 31 H 1.08997 * 109.46734 * 270.29619 * 6 5 4 32 32 H 1.09004 * 109.46976 * 30.29771 * 6 5 4 33 33 H 1.09000 * 109.46881 * 150.29450 * 6 5 4 34 34 H 1.09001 * 109.47018 * 29.97949 * 8 7 5 35 35 H 1.08996 * 109.46847 * 149.97587 * 8 7 5 36 36 H 1.09001 * 109.46345 * 294.18478 * 10 9 8 37 37 H 1.09001 * 109.45825 * 54.15063 * 10 9 8 38 38 H 1.09001 * 109.50183 * 299.24038 * 11 10 9 39 39 H 1.08997 * 109.53310 * 179.14197 * 11 10 9 40 40 H 1.08999 * 109.52332 * 62.25090 * 12 11 10 41 41 H 0.96999 * 120.00182 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.50468 * 297.71629 * 21 12 11 43 43 H 1.09003 * 109.53442 * 177.61708 * 21 12 11 44 44 H 1.09001 * 109.45907 * 305.84906 * 22 9 8 45 45 H 1.08998 * 109.46519 * 65.82844 * 22 9 8 46 46 H 1.09002 * 109.47331 * 269.97717 * 24 23 7 47 47 H 1.08999 * 109.47444 * 29.97823 * 24 23 7 48 48 H 1.09005 * 109.47403 * 149.97656 * 24 23 7 49 49 H 1.09005 * 109.47438 * 270.02298 * 26 25 23 50 50 H 1.09002 * 109.47361 * 30.02164 * 26 25 23 51 51 H 1.09000 * 109.47236 * 150.02372 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6047 0.0005 6 6 1.1021 4.8698 0.0011 7 6 3.3021 3.6757 0.0001 8 6 3.9863 5.0185 0.0001 9 7 4.2085 5.4548 -1.3848 10 6 5.1616 4.5712 -2.0684 11 6 5.2578 4.9663 -3.5438 12 6 5.7183 6.4228 -3.6480 13 6 5.7585 6.8372 -5.0964 14 1 5.1444 7.6561 -5.4411 15 6 6.5792 6.1709 -5.9816 16 7 7.3266 5.1734 -5.5621 17 14 6.6285 6.6841 -7.7770 18 1 5.7010 7.8238 -7.9917 19 1 8.0093 7.0957 -8.1364 20 1 6.2147 5.5412 -8.6301 21 6 4.7350 7.3165 -2.8872 22 6 4.6540 6.8533 -1.4309 23 6 4.0561 2.5170 0.0000 24 6 5.5609 2.5980 0.0001 25 6 3.4311 1.2847 -0.0001 26 6 4.2537 0.0221 -0.0008 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2129 2.3204 -0.0106 31 1 0.9043 5.1750 -1.0265 32 1 0.1577 4.6911 0.5152 33 1 1.6520 5.6583 0.5149 34 1 3.3583 5.7462 0.5140 35 1 4.9441 4.9381 0.5140 36 1 6.1426 4.6652 -1.6026 37 1 4.8202 3.5390 -1.9904 38 1 4.2801 4.8592 -4.0136 39 1 5.9765 4.3204 -4.0480 40 1 6.7127 6.5224 -3.2130 41 1 7.9042 4.7049 -6.1847 42 1 3.7491 7.2465 -3.3467 43 1 5.0800 8.3500 -2.9218 44 1 3.9438 7.4786 -0.8899 45 1 5.6374 6.9366 -0.9682 46 1 5.9238 2.6172 -1.0275 47 1 5.8758 3.5064 0.5137 48 1 5.9715 1.7290 0.5143 49 1 4.4521 -0.2819 -1.0286 50 1 5.1978 0.2031 0.5131 51 1 3.7063 -0.7684 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138729962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:54 Heat of formation + Delta-G solvation = -38.182897 kcal Electronic energy + Delta-G solvation = -27946.915866 eV Core-core repulsion = 24424.173506 eV Total energy + Delta-G solvation = -3522.742360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59054 -39.99781 -38.62136 -35.84362 -35.32802 -33.72298 -32.06893 -31.32768 -30.11987 -29.26485 -28.14818 -27.52529 -25.89676 -25.16036 -23.68749 -23.20780 -21.38253 -20.92587 -20.30922 -18.44290 -18.17467 -17.80566 -17.07926 -16.64185 -16.36938 -16.16816 -15.71002 -15.32028 -14.99077 -14.75767 -14.69637 -14.39560 -14.25679 -14.15812 -13.99181 -13.70492 -13.69506 -13.62193 -13.28855 -12.89227 -12.84169 -12.72582 -12.65211 -12.58111 -12.43062 -12.39023 -12.19519 -12.02939 -11.82495 -11.75209 -11.52770 -11.44747 -11.28616 -10.77577 -10.57937 -10.35131 -9.39746 -9.12145 -8.81472 -8.06695 -6.19770 0.40354 0.48263 1.39284 1.41245 1.52479 2.41223 2.44148 2.66636 3.19809 3.29797 3.81718 3.82462 3.97281 4.12915 4.14812 4.27753 4.30689 4.35259 4.39964 4.40628 4.43898 4.52378 4.58820 4.64716 4.68724 4.71709 4.74697 4.77100 4.82059 4.85123 4.90192 4.93834 4.97948 4.98672 5.04297 5.10942 5.18208 5.19469 5.26923 5.36508 5.45406 5.48491 5.58889 5.60087 5.64741 5.83179 5.93719 6.02912 6.06755 6.34687 6.40115 6.43073 6.51692 6.92269 7.47765 8.97779 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.003478 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.752640 B = 8048.426391 C = 8511.862799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.119 3.881 4 C -0.218 4.218 5 C -0.038 4.038 6 C -0.108 4.108 7 C -0.121 4.121 8 C 0.095 3.905 9 N -0.531 5.531 10 C 0.071 3.929 11 C -0.094 4.094 12 C 0.046 3.954 13 C -0.532 4.532 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.917 5.917 17 Si 0.951 3.049 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.282 1.282 21 C -0.098 4.098 22 C 0.066 3.934 23 C -0.047 4.047 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.100 4.100 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.017 0.983 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.057 0.943 40 H -0.012 1.012 41 H 0.259 0.741 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.022 0.978 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 -7.654 16.304 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.073 3.927 4 C -0.236 4.236 5 C -0.038 4.038 6 C -0.164 4.164 7 C -0.122 4.122 8 C -0.032 4.032 9 N -0.256 5.256 10 C -0.056 4.056 11 C -0.132 4.132 12 C 0.027 3.973 13 C -0.570 4.570 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.208 1.208 21 C -0.136 4.136 22 C -0.062 4.062 23 C -0.048 4.048 24 C -0.182 4.182 25 C -0.146 4.146 26 C -0.157 4.157 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.006 0.994 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.040 0.960 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.698 -7.981 15.995 21.927 hybrid contribution 0.905 0.263 -1.008 1.380 sum -11.793 -7.718 14.987 20.573 Atomic orbital electron populations 1.23297 0.76825 1.05350 1.01979 1.86015 1.23073 1.26597 1.88758 1.18896 0.91854 0.84704 0.97223 1.21227 1.00615 0.91346 1.10440 1.19742 0.93084 0.95534 0.95487 1.20818 0.99098 0.93855 1.02673 1.19463 0.93361 0.94305 1.05087 1.21067 0.98928 0.93881 0.89285 1.61973 1.46754 1.02221 1.14623 1.22260 0.92183 0.96458 0.94747 1.21411 0.98471 0.99714 0.93636 1.18640 0.92602 0.92348 0.93671 1.21630 1.23814 1.16150 0.95397 0.93211 1.25730 0.95208 0.95107 1.02606 1.70026 1.27200 1.22603 1.35839 0.85610 0.77837 0.78237 0.80600 1.19194 1.20592 1.20782 1.21526 0.99265 0.98345 0.94476 1.22067 0.98184 0.89015 0.96900 1.19561 0.96288 0.91528 0.97385 1.21214 0.90776 1.03522 1.02702 1.19248 0.91201 0.96076 1.08085 1.20617 0.99189 0.93744 1.02123 0.91667 0.92452 0.86299 0.83710 0.91360 0.90237 0.90555 0.88409 0.94005 0.96532 0.91154 0.95940 0.92429 0.99355 0.93190 0.93250 0.92808 0.89106 0.95983 0.91291 0.91067 0.89630 0.91992 0.90331 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.78 9.54 -92.39 -0.88 -8.66 16 3 C 0.12 3.15 6.66 22.51 0.15 3.30 16 4 C -0.22 -5.33 8.69 22.37 0.19 -5.14 16 5 C -0.04 -0.98 5.88 -19.88 -0.12 -1.10 16 6 C -0.11 -2.26 9.60 71.24 0.68 -1.57 16 7 C -0.12 -3.45 4.89 -19.85 -0.10 -3.55 16 8 C 0.09 2.64 4.50 85.56 0.38 3.02 16 9 N -0.53 -18.32 4.65 -900.94 -4.19 -22.51 16 10 C 0.07 2.85 3.68 86.33 0.32 3.17 16 11 C -0.09 -4.68 5.12 30.64 0.16 -4.52 16 12 C 0.05 2.37 2.16 -11.46 -0.02 2.34 16 13 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.01 0.67 5.31 84.65 0.45 1.12 16 16 N -0.92 -54.12 11.37 21.45 0.24 -53.88 16 17 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 C -0.10 -4.13 5.32 30.65 0.16 -3.96 16 22 C 0.07 2.25 5.46 86.33 0.47 2.72 16 23 C -0.05 -1.34 4.86 -19.88 -0.10 -1.43 16 24 C -0.13 -3.31 7.76 71.24 0.55 -2.76 16 25 C -0.15 -4.03 5.89 -19.77 -0.12 -4.15 16 26 C -0.10 -2.35 9.38 71.23 0.67 -1.68 16 27 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 28 H 0.06 0.81 7.65 -2.38 -0.02 0.79 16 29 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.08 1.48 5.94 -2.39 -0.01 1.46 16 34 H 0.10 2.31 5.78 -2.39 -0.01 2.29 16 35 H 0.04 1.14 5.92 -2.39 -0.01 1.13 16 36 H 0.02 0.68 7.65 -2.39 -0.02 0.66 16 37 H 0.07 2.75 4.57 -2.39 -0.01 2.74 16 38 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 3.23 6.17 -2.39 -0.01 3.21 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.09 2.52 8.02 -2.39 -0.02 2.50 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 2.07 5.77 -2.39 -0.01 2.05 16 47 H 0.07 1.81 5.94 -2.39 -0.01 1.79 16 48 H 0.09 1.86 5.95 -2.38 -0.01 1.85 16 49 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.08 1.59 5.95 -2.39 -0.01 1.58 16 51 H 0.07 1.52 7.53 -2.39 -0.02 1.51 16 Total: -1.00 -65.78 376.04 3.19 -62.59 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.92 Total: 18.50 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 5.07 Total: -42.78 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -3.94 Total: -76.39 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.88 Total: -8.66 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -65.78 3.19 -62.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138729962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.405 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds