Wall clock time and date at job start Tue Mar 31 2020 11:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.50705 * 119.97224 * 180.25001 * 5 4 3 7 7 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 8 8 C 1.50696 * 119.94621 * 179.74646 * 7 5 4 9 9 N 1.46904 * 109.47246 * 270.02320 * 8 7 5 10 10 C 1.46846 * 111.00067 * 45.78535 * 9 8 7 11 11 C 1.53040 * 109.52575 * 185.84326 * 10 9 8 12 12 C 1.53114 * 109.27454 * 300.82414 * 11 10 9 13 13 C 1.53112 * 109.16764 * 57.65381 * 12 11 10 14 14 H 1.09005 * 109.53501 * 62.29959 * 13 12 11 15 15 C 1.50697 * 109.51003 * 182.40254 * 13 12 11 16 16 H 1.08004 * 120.00032 * 119.79602 * 15 13 12 17 17 C 1.37877 * 119.99693 * 299.80624 * 15 13 12 18 18 N 1.31505 * 120.00388 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99671 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47187 * 59.99824 * 19 17 15 21 21 H 1.48501 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47477 * 299.99695 * 19 17 15 23 23 C 1.46840 * 111.00372 * 169.99904 * 9 8 7 24 24 C 1.38246 * 120.11013 * 359.76602 * 7 5 4 25 25 C 1.50703 * 119.97077 * 179.97438 * 24 7 5 26 26 C 1.38159 * 120.05555 * 359.97438 * 24 7 5 27 27 C 1.50703 * 120.02931 * 180.02562 * 26 24 7 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.09000 * 109.47010 * 270.25737 * 6 5 4 33 33 H 1.09006 * 109.46602 * 30.25796 * 6 5 4 34 34 H 1.08996 * 109.46996 * 150.25353 * 6 5 4 35 35 H 1.09004 * 109.47433 * 30.01933 * 8 7 5 36 36 H 1.08997 * 109.47634 * 150.02098 * 8 7 5 37 37 H 1.09005 * 109.46225 * 305.86194 * 10 9 8 38 38 H 1.08998 * 109.46130 * 65.82367 * 10 9 8 39 39 H 1.08996 * 109.50212 * 180.88313 * 11 10 9 40 40 H 1.09001 * 109.49926 * 60.76402 * 11 10 9 41 41 H 1.09000 * 109.52418 * 297.74654 * 12 11 10 42 42 H 1.09002 * 109.57190 * 177.59525 * 12 11 10 43 43 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46159 * 294.17596 * 23 9 8 45 45 H 1.09001 * 109.46600 * 54.14250 * 23 9 8 46 46 H 1.09006 * 109.47142 * 270.02146 * 25 24 7 47 47 H 1.09002 * 109.47303 * 30.02167 * 25 24 7 48 48 H 1.09000 * 109.47206 * 150.02292 * 25 24 7 49 49 H 1.09001 * 109.47617 * 269.98437 * 27 26 24 50 50 H 1.09003 * 109.46732 * 29.97973 * 27 26 24 51 51 H 1.08997 * 109.47197 * 149.97705 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 1.1018 4.8699 -0.0007 7 6 3.3018 3.6759 0.0002 8 6 3.9860 5.0186 0.0003 9 7 4.2082 5.4550 -1.3847 10 6 3.0032 5.2544 -2.1995 11 6 3.3142 5.5816 -3.6619 12 6 3.7870 7.0342 -3.7653 13 6 5.0139 7.2285 -2.8701 14 1 5.8252 6.5902 -3.2202 15 6 5.4504 8.6700 -2.9203 16 1 5.4690 9.2604 -2.0161 17 6 5.8257 9.2351 -4.1206 18 7 5.8034 8.5162 -5.2215 19 14 6.3661 11.0222 -4.1830 20 1 7.5529 11.2112 -3.3107 21 1 6.7162 11.3850 -5.5798 22 1 5.2593 11.8909 -3.7080 23 6 4.6536 6.8535 -1.4308 24 6 4.0559 2.5172 0.0001 25 6 5.5607 2.5983 0.0000 26 6 3.4311 1.2849 0.0001 27 6 4.2537 0.0222 0.0006 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3203 -0.0106 32 1 0.9047 5.1747 -1.0285 33 1 0.1571 4.6912 0.5129 34 1 1.6513 5.6585 0.5132 35 1 3.3580 5.7464 0.5142 36 1 4.9439 4.9383 0.5141 37 1 2.6799 4.2165 -2.1204 38 1 2.2094 5.9101 -1.8415 39 1 2.4154 5.4477 -4.2638 40 1 4.0983 4.9169 -4.0246 41 1 2.9889 7.7012 -3.4392 42 1 4.0506 7.2597 -4.7986 43 1 6.0671 8.9139 -6.0660 44 1 3.8522 7.5017 -1.0764 45 1 5.5291 6.9771 -0.7933 46 1 5.9235 2.6182 -1.0277 47 1 5.8757 3.5063 0.5142 48 1 5.9715 1.7289 0.5134 49 1 4.4521 -0.2826 -1.0269 50 1 5.1977 0.2038 0.5144 51 1 3.7063 -0.7678 0.5148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138730158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:17 Heat of formation + Delta-G solvation = -36.705688 kcal Electronic energy + Delta-G solvation = -27927.158928 eV Core-core repulsion = 24404.480624 eV Total energy + Delta-G solvation = -3522.678304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66772 -40.03412 -38.61242 -35.89472 -35.08680 -33.86443 -32.14575 -31.56420 -30.18959 -28.90038 -28.03769 -26.92185 -26.65159 -25.31855 -23.62821 -23.19539 -21.39006 -20.89774 -20.29713 -18.40847 -18.16027 -17.85219 -17.02973 -16.69796 -16.40193 -16.15589 -15.60057 -15.15390 -14.97921 -14.85885 -14.71446 -14.53352 -14.43647 -14.07670 -13.91552 -13.73001 -13.65378 -13.51919 -13.31672 -13.03533 -12.83379 -12.75755 -12.69713 -12.65579 -12.51867 -12.46030 -12.15906 -11.93051 -11.84270 -11.62717 -11.53595 -11.39689 -11.33567 -10.83687 -10.63904 -10.35380 -9.39466 -9.13192 -8.75155 -8.05837 -6.20038 0.38304 0.45452 1.42556 1.43771 1.51306 2.40902 2.44002 2.65791 3.21060 3.32044 3.77318 3.79852 3.95262 4.07297 4.19694 4.23870 4.27784 4.36426 4.37957 4.40865 4.43746 4.55535 4.58149 4.61128 4.66431 4.72046 4.73826 4.77332 4.80976 4.85318 4.87633 4.90622 4.94482 5.01355 5.01837 5.14319 5.16279 5.21022 5.24315 5.39318 5.43283 5.46568 5.52931 5.58546 5.65212 5.82943 5.91941 5.99791 6.15719 6.24563 6.38912 6.48848 6.50989 6.92999 7.47747 8.98606 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003110 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.520001 B = 8999.838973 C = 9328.873491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.121 3.879 4 C -0.215 4.215 5 C -0.047 4.047 6 C -0.124 4.124 7 C -0.125 4.125 8 C 0.095 3.905 9 N -0.535 5.535 10 C 0.068 3.932 11 C -0.112 4.112 12 C -0.101 4.101 13 C 0.056 3.944 14 H -0.005 1.005 15 C -0.535 4.535 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.082 3.918 24 C -0.035 4.035 25 C -0.113 4.113 26 C -0.142 4.142 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 -16.369 12.695 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.076 3.924 4 C -0.233 4.233 5 C -0.047 4.047 6 C -0.180 4.180 7 C -0.125 4.125 8 C -0.031 4.031 9 N -0.260 5.260 10 C -0.059 4.059 11 C -0.150 4.150 12 C -0.139 4.139 13 C 0.037 3.963 14 H 0.013 0.987 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.045 4.045 24 C -0.035 4.035 25 C -0.169 4.169 26 C -0.143 4.143 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.142 -16.835 12.317 23.194 hybrid contribution -0.463 1.796 -0.211 1.867 sum -10.604 -15.038 12.107 22.027 Atomic orbital electron populations 1.23297 0.76844 1.05388 1.01965 1.86024 1.23025 1.26485 1.88699 1.18890 0.91902 0.84591 0.97038 1.21157 1.00604 0.91137 1.10447 1.19667 0.93033 0.95314 0.96730 1.21146 0.99656 0.94265 1.02971 1.19413 0.93003 0.94481 1.05642 1.21081 0.99792 0.92539 0.89702 1.62024 1.33040 1.21121 1.09798 1.22213 0.90699 1.00173 0.92823 1.21610 0.99860 0.97272 0.96266 1.21433 0.96911 0.93538 1.02002 1.18543 0.93194 0.93927 0.90617 0.98671 1.21502 1.44449 0.97579 0.93876 0.92938 1.25716 0.95609 1.01705 0.95449 1.70034 1.48780 1.37603 0.99115 0.85691 0.78888 0.80560 0.76971 1.19643 1.21069 1.19662 1.21988 0.97748 0.86191 0.98587 1.19562 0.96769 0.90964 0.96254 1.20888 0.90062 1.03275 1.02697 1.19283 0.91081 0.96152 1.07782 1.20624 0.99181 0.93477 1.02331 0.92293 0.86257 0.91885 0.83730 0.90597 0.89845 0.91609 0.93960 0.89734 0.90727 0.94597 0.91821 0.93750 0.95817 0.92578 0.93131 0.96523 0.92357 0.91410 0.91109 0.89680 0.91594 0.90201 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.02 9.54 -92.48 -0.88 -7.90 16 3 C 0.12 2.95 6.66 22.50 0.15 3.10 16 4 C -0.21 -4.92 8.69 22.37 0.19 -4.72 16 5 C -0.05 -1.17 4.52 -19.88 -0.09 -1.26 16 6 C -0.12 -2.75 8.37 71.24 0.60 -2.15 16 7 C -0.12 -3.47 4.13 -19.85 -0.08 -3.55 16 8 C 0.10 2.86 4.73 85.55 0.40 3.27 16 9 N -0.54 -19.58 4.80 -900.92 -4.32 -23.91 16 10 C 0.07 2.41 3.76 86.33 0.32 2.73 16 11 C -0.11 -4.54 6.09 30.65 0.19 -4.36 16 12 C -0.10 -4.93 5.03 30.67 0.15 -4.78 16 13 C 0.06 2.89 2.26 -11.49 -0.03 2.86 16 14 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 15 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 17 C 0.01 0.78 5.30 84.66 0.45 1.23 16 18 N -0.92 -53.92 11.36 21.45 0.24 -53.68 16 19 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.08 3.51 4.65 86.33 0.40 3.91 16 24 C -0.03 -0.93 5.88 -19.88 -0.12 -1.04 16 25 C -0.11 -2.70 9.19 71.24 0.65 -2.05 16 26 C -0.14 -3.59 5.89 -19.77 -0.12 -3.70 16 27 C -0.10 -2.04 9.38 71.24 0.67 -1.37 16 28 H 0.06 0.72 7.65 -2.39 -0.02 0.70 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 31 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 32 H 0.08 1.78 5.85 -2.39 -0.01 1.76 16 33 H 0.08 1.44 8.09 -2.38 -0.02 1.42 16 34 H 0.07 1.53 5.94 -2.39 -0.01 1.52 16 35 H 0.04 1.23 5.88 -2.38 -0.01 1.22 16 36 H 0.08 2.43 5.94 -2.39 -0.01 2.42 16 37 H 0.07 2.50 5.62 -2.38 -0.01 2.49 16 38 H 0.04 1.22 5.77 -2.39 -0.01 1.20 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 3.11 6.16 -2.39 -0.01 3.10 16 43 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 2.44 8.12 -2.39 -0.02 2.43 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.07 1.69 5.94 -2.39 -0.01 1.68 16 48 H 0.08 1.62 5.94 -2.39 -0.01 1.60 16 49 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.39 5.95 -2.39 -0.01 1.37 16 51 H 0.07 1.32 7.53 -2.39 -0.02 1.30 16 Total: -1.00 -64.12 375.03 3.07 -61.05 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.92 Total: 18.62 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 5.08 Total: -40.24 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -4.08 Total: -77.58 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.88 Total: -7.90 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.12 3.07 -61.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138730158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.346 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds