Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35895 * 117.00338 * 2 1 4 4 C 1.38754 * 120.05375 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94689 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97493 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05247 * 359.97438 * 5 4 3 8 8 C 1.50709 * 119.94275 * 180.02562 * 7 5 4 9 9 N 1.46894 * 109.47091 * 98.70385 * 8 7 5 10 10 C 1.46849 * 111.00110 * 292.24132 * 9 8 7 11 11 C 1.53041 * 109.52487 * 174.16143 * 10 9 8 12 12 C 1.53119 * 109.27859 * 59.17949 * 11 10 9 13 13 C 1.53122 * 109.15702 * 302.34454 * 12 11 10 14 14 H 1.09001 * 109.50645 * 297.71111 * 13 12 11 15 15 C 1.50704 * 109.50021 * 177.59698 * 13 12 11 16 16 H 1.08004 * 119.99627 * 265.42682 * 15 13 12 17 17 C 1.37878 * 119.99979 * 85.43058 * 15 13 12 18 18 N 1.31514 * 119.99492 * 185.13888 * 17 15 13 19 19 Si 1.86795 * 120.00135 * 5.13321 * 17 15 13 20 20 H 1.48493 * 109.47147 * 94.74875 * 19 17 15 21 21 H 1.48505 * 109.47065 * 214.75004 * 19 17 15 22 22 H 1.48506 * 109.47199 * 334.74484 * 19 17 15 23 23 C 1.46846 * 111.00298 * 168.02971 * 9 8 7 24 24 C 1.38247 * 120.11616 * 0.28742 * 7 5 4 25 25 C 1.50697 * 119.97576 * 179.70765 * 24 7 5 26 26 C 1.38173 * 120.04877 * 359.45449 * 24 7 5 27 27 C 1.50697 * 120.02287 * 180.24724 * 26 24 7 28 28 H 1.08996 * 109.47639 * 300.00082 * 1 2 3 29 29 H 1.08999 * 109.46839 * 60.00266 * 1 2 3 30 30 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02796 * 0.04617 * 4 3 2 32 32 H 1.09000 * 109.47331 * 265.20305 * 6 5 4 33 33 H 1.09000 * 109.46641 * 25.20495 * 6 5 4 34 34 H 1.08998 * 109.47199 * 145.20344 * 6 5 4 35 35 H 1.08998 * 109.46481 * 338.70505 * 8 7 5 36 36 H 1.09001 * 109.46953 * 218.70671 * 8 7 5 37 37 H 1.09001 * 109.46355 * 54.14122 * 10 9 8 38 38 H 1.09001 * 109.45983 * 294.17556 * 10 9 8 39 39 H 1.09006 * 109.50088 * 299.23571 * 11 10 9 40 40 H 1.08997 * 109.53422 * 179.14026 * 11 10 9 41 41 H 1.08998 * 109.51979 * 182.44523 * 12 11 10 42 42 H 1.08999 * 109.51977 * 62.24886 * 12 11 10 43 43 H 0.97005 * 119.99735 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.45844 * 65.82281 * 23 9 8 45 45 H 1.09002 * 109.46208 * 305.86029 * 23 9 8 46 46 H 1.08999 * 109.47055 * 89.99747 * 25 24 7 47 47 H 1.09001 * 109.47268 * 210.00023 * 25 24 7 48 48 H 1.09006 * 109.46658 * 330.00188 * 25 24 7 49 49 H 1.08997 * 109.47219 * 270.27563 * 27 26 24 50 50 H 1.09001 * 109.47298 * 30.27813 * 27 26 24 51 51 H 1.09007 * 109.46742 * 150.27627 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0022 7 6 3.3019 3.6757 -0.0005 8 6 3.9861 5.0185 -0.0005 9 7 4.3946 5.3599 1.3685 10 6 3.2244 5.6040 2.2215 11 6 3.6801 5.8125 3.6675 12 6 4.6374 7.0060 3.7288 13 6 5.8231 6.7475 2.7950 14 1 6.3684 5.8668 3.1343 15 6 6.7407 7.9429 2.8043 16 1 6.6372 8.7089 2.0500 17 6 7.7124 8.0585 3.7756 18 7 8.4460 9.1478 3.8453 19 14 7.9866 6.6683 4.9926 20 1 9.0766 5.7878 4.5010 21 1 8.3643 7.2335 6.3130 22 1 6.7368 5.8783 5.1317 23 6 5.3053 6.5118 1.3743 24 6 4.0560 2.5170 -0.0055 25 6 5.5608 2.5981 -0.0115 26 6 3.4311 1.2847 0.0004 27 6 4.2537 0.0221 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0002 32 1 0.9771 5.2209 -1.0266 33 1 0.1238 4.6697 0.4351 34 1 1.6127 5.6337 0.5839 35 1 3.2980 5.7768 -0.3742 36 1 4.8659 4.9780 -0.6428 37 1 2.5537 4.7461 2.1722 38 1 2.7009 6.4945 1.8737 39 1 4.1916 4.9171 4.0206 40 1 2.8130 6.0088 4.2982 41 1 4.9983 7.1313 4.7496 42 1 4.1148 7.9087 3.4126 43 1 9.1298 9.2291 4.5285 44 1 4.7720 7.3981 1.0304 45 1 6.1461 6.3134 0.7095 46 1 5.9278 2.6161 1.0147 47 1 5.9694 1.7298 -0.5284 48 1 5.8736 3.5072 -0.5252 49 1 4.4521 -0.2825 -1.0269 50 1 5.1977 0.2036 0.5146 51 1 3.7063 -0.7681 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138730160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = -27.670217 kcal Electronic energy + Delta-G solvation = -27924.505690 eV Core-core repulsion = 24402.219194 eV Total energy + Delta-G solvation = -3522.286496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62202 -38.84767 -37.55464 -34.60964 -33.73432 -32.34951 -30.99234 -30.27760 -29.27710 -28.06551 -27.24666 -25.56468 -24.92891 -24.38064 -22.33748 -21.42657 -20.37477 -19.88771 -18.76481 -17.32905 -16.88761 -16.81056 -15.96812 -15.53981 -15.12407 -14.63268 -14.20670 -13.95823 -13.89073 -13.63927 -13.51952 -13.44920 -13.25415 -12.86064 -12.74172 -12.60916 -12.59030 -12.38754 -12.14365 -12.03239 -11.95362 -11.88552 -11.71354 -11.25010 -11.00660 -10.93572 -10.89158 -10.65839 -10.61619 -10.49877 -10.08198 -9.81956 -9.50642 -9.25727 -8.88275 -8.47130 -8.42077 -7.98374 -7.67333 -6.04687 -4.03397 1.34212 1.45516 3.16691 3.33071 3.42163 3.47759 3.64350 4.47281 4.54883 4.67338 4.75180 4.89159 4.92243 4.92881 5.09706 5.18334 5.26637 5.27193 5.33812 5.43181 5.49433 5.53746 5.60097 5.63087 5.67110 5.70923 5.74393 5.77104 5.84432 5.90848 5.97943 6.04375 6.08330 6.18514 6.22325 6.33185 6.35796 6.41638 6.45616 6.54202 6.55776 6.71937 6.81526 6.84914 6.89279 6.97521 7.34606 7.36063 7.51454 7.65028 7.67653 7.92199 8.56169 9.00202 9.59602 11.08569 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.003496 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.195585 B = 8006.322656 C = 8501.137792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.214 4.214 5 C -0.043 4.043 6 C -0.126 4.126 7 C -0.103 4.103 8 C 0.092 3.908 9 N -0.533 5.533 10 C 0.062 3.938 11 C -0.120 4.120 12 C -0.113 4.113 13 C 0.022 3.978 14 H 0.038 0.962 15 C -0.512 4.512 16 H 0.070 0.930 17 C 0.072 3.928 18 N -0.903 5.903 19 Si 0.874 3.126 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.256 1.256 23 C 0.074 3.926 24 C -0.019 4.019 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.102 4.102 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 -16.608 -8.926 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.233 4.233 5 C -0.044 4.044 6 C -0.182 4.182 7 C -0.104 4.104 8 C -0.035 4.035 9 N -0.257 5.257 10 C -0.066 4.066 11 C -0.158 4.158 12 C -0.151 4.151 13 C 0.003 3.997 14 H 0.056 0.944 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.130 4.130 18 N -0.541 5.541 19 Si 0.701 3.299 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.053 4.053 24 C -0.020 4.020 25 C -0.170 4.170 26 C -0.128 4.128 27 C -0.159 4.159 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.132 -17.089 -8.633 24.404 hybrid contribution -0.638 0.246 0.429 0.808 sum -15.771 -16.844 -8.204 24.490 Atomic orbital electron populations 1.22993 0.78900 1.03511 1.01218 1.86032 1.20885 1.27137 1.89000 1.18712 0.91683 0.83853 0.97722 1.20930 0.99357 0.91750 1.11222 1.19481 0.93263 0.94323 0.97329 1.21049 0.99193 0.95490 1.02509 1.19436 0.92171 0.94993 1.03751 1.20995 0.98639 0.92209 0.91639 1.62014 1.15953 1.39918 1.07819 1.22107 0.91980 0.98477 0.94009 1.21681 0.99019 1.00315 0.94787 1.21913 0.97000 0.95500 1.00688 1.19137 0.93314 0.97158 0.90103 0.94395 1.20979 1.14570 1.05648 1.13810 0.91189 1.25011 0.95518 0.95390 0.97033 1.69925 1.22664 1.26641 1.34849 0.86904 0.79198 0.83112 0.80696 1.20495 1.21729 1.18057 1.22205 0.94027 0.88628 1.00393 1.19406 0.96223 0.90729 0.95654 1.20844 0.90474 1.02306 1.03336 1.19018 0.90350 0.95649 1.07799 1.20581 0.99063 0.94402 1.01815 0.92833 0.92902 0.88558 0.85972 0.91233 0.91879 0.90279 0.94416 0.90018 0.91644 0.95652 0.92100 0.93171 0.93141 0.93268 0.92778 0.95885 0.91478 0.90021 0.92004 0.90900 0.91839 0.91415 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.65 9.54 -19.41 -0.19 -3.83 16 3 C 0.13 1.61 6.66 -39.22 -0.26 1.34 16 4 C -0.21 -2.57 8.67 -39.43 -0.34 -2.92 16 5 C -0.04 -0.55 5.02 -104.65 -0.52 -1.08 16 6 C -0.13 -1.36 8.64 36.00 0.31 -1.05 16 7 C -0.10 -1.43 4.69 -104.60 -0.49 -1.92 16 8 C 0.09 1.34 4.27 -4.97 -0.02 1.32 16 9 N -0.53 -9.07 4.63 -236.11 -1.09 -10.17 16 10 C 0.06 1.01 3.98 -3.83 -0.02 1.00 16 11 C -0.12 -2.14 6.09 -26.65 -0.16 -2.31 16 12 C -0.11 -2.40 4.96 -26.61 -0.13 -2.53 16 13 C 0.02 0.51 1.79 -91.69 -0.16 0.35 16 14 H 0.04 0.92 5.70 -51.93 -0.30 0.62 16 15 C -0.51 -14.12 8.87 -34.44 -0.31 -14.42 16 16 H 0.07 2.10 8.05 -52.48 -0.42 1.67 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 19 Si 0.87 21.59 26.41 -169.99 -4.49 17.10 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.06 5.86 56.52 0.33 -5.73 16 23 C 0.07 1.47 4.72 -3.84 -0.02 1.46 16 24 C -0.02 -0.27 5.88 -104.64 -0.62 -0.88 16 25 C -0.11 -1.43 8.78 36.00 0.32 -1.11 16 26 C -0.13 -1.68 5.89 -104.47 -0.62 -2.29 16 27 C -0.10 -1.12 8.96 36.00 0.32 -0.80 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.08 0.94 3.93 -51.93 -0.20 0.73 16 35 H 0.04 0.53 6.28 -51.93 -0.33 0.20 16 36 H 0.08 1.15 6.13 -51.93 -0.32 0.83 16 37 H 0.07 1.01 5.82 -51.93 -0.30 0.71 16 38 H 0.03 0.41 7.16 -51.93 -0.37 0.04 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.13 6.75 -51.93 -0.35 0.78 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 1.33 7.99 -51.93 -0.42 0.92 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16 48 H 0.07 0.92 6.09 -51.93 -0.32 0.60 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.70 6.72 -51.93 -0.35 0.35 16 51 H 0.06 0.72 7.53 -51.93 -0.39 0.32 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -30.70 375.77 -9.70 -40.40 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.54 Total: 0.27 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.82 Total: -22.67 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.32 Total: -36.92 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.19 Total: -3.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.49 Total: 17.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.70 -9.70 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138730160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.728 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds