Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35895 * 117.00338 * 2 1 4 4 C 1.38754 * 120.05375 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94689 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97493 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05247 * 359.97438 * 5 4 3 8 8 C 1.50709 * 119.94275 * 180.02562 * 7 5 4 9 9 N 1.46894 * 109.47091 * 98.70385 * 8 7 5 10 10 C 1.46849 * 111.00110 * 292.24132 * 9 8 7 11 11 C 1.53041 * 109.52487 * 174.16143 * 10 9 8 12 12 C 1.53119 * 109.27859 * 59.17949 * 11 10 9 13 13 C 1.53122 * 109.15702 * 302.34454 * 12 11 10 14 14 H 1.09001 * 109.50645 * 297.71111 * 13 12 11 15 15 C 1.50704 * 109.50021 * 177.59698 * 13 12 11 16 16 H 1.08004 * 119.99627 * 265.42682 * 15 13 12 17 17 C 1.37878 * 119.99979 * 85.43058 * 15 13 12 18 18 N 1.31514 * 119.99492 * 185.13888 * 17 15 13 19 19 Si 1.86795 * 120.00135 * 5.13321 * 17 15 13 20 20 H 1.48493 * 109.47147 * 94.74875 * 19 17 15 21 21 H 1.48505 * 109.47065 * 214.75004 * 19 17 15 22 22 H 1.48506 * 109.47199 * 334.74484 * 19 17 15 23 23 C 1.46846 * 111.00298 * 168.02971 * 9 8 7 24 24 C 1.38247 * 120.11616 * 0.28742 * 7 5 4 25 25 C 1.50697 * 119.97576 * 179.70765 * 24 7 5 26 26 C 1.38173 * 120.04877 * 359.45449 * 24 7 5 27 27 C 1.50697 * 120.02287 * 180.24724 * 26 24 7 28 28 H 1.08996 * 109.47639 * 300.00082 * 1 2 3 29 29 H 1.08999 * 109.46839 * 60.00266 * 1 2 3 30 30 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02796 * 0.04617 * 4 3 2 32 32 H 1.09000 * 109.47331 * 265.20305 * 6 5 4 33 33 H 1.09000 * 109.46641 * 25.20495 * 6 5 4 34 34 H 1.08998 * 109.47199 * 145.20344 * 6 5 4 35 35 H 1.08998 * 109.46481 * 338.70505 * 8 7 5 36 36 H 1.09001 * 109.46953 * 218.70671 * 8 7 5 37 37 H 1.09001 * 109.46355 * 54.14122 * 10 9 8 38 38 H 1.09001 * 109.45983 * 294.17556 * 10 9 8 39 39 H 1.09006 * 109.50088 * 299.23571 * 11 10 9 40 40 H 1.08997 * 109.53422 * 179.14026 * 11 10 9 41 41 H 1.08998 * 109.51979 * 182.44523 * 12 11 10 42 42 H 1.08999 * 109.51977 * 62.24886 * 12 11 10 43 43 H 0.97005 * 119.99735 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.45844 * 65.82281 * 23 9 8 45 45 H 1.09002 * 109.46208 * 305.86029 * 23 9 8 46 46 H 1.08999 * 109.47055 * 89.99747 * 25 24 7 47 47 H 1.09001 * 109.47268 * 210.00023 * 25 24 7 48 48 H 1.09006 * 109.46658 * 330.00188 * 25 24 7 49 49 H 1.08997 * 109.47219 * 270.27563 * 27 26 24 50 50 H 1.09001 * 109.47298 * 30.27813 * 27 26 24 51 51 H 1.09007 * 109.46742 * 150.27627 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0022 7 6 3.3019 3.6757 -0.0005 8 6 3.9861 5.0185 -0.0005 9 7 4.3946 5.3599 1.3685 10 6 3.2244 5.6040 2.2215 11 6 3.6801 5.8125 3.6675 12 6 4.6374 7.0060 3.7288 13 6 5.8231 6.7475 2.7950 14 1 6.3684 5.8668 3.1343 15 6 6.7407 7.9429 2.8043 16 1 6.6372 8.7089 2.0500 17 6 7.7124 8.0585 3.7756 18 7 8.4460 9.1478 3.8453 19 14 7.9866 6.6683 4.9926 20 1 9.0766 5.7878 4.5010 21 1 8.3643 7.2335 6.3130 22 1 6.7368 5.8783 5.1317 23 6 5.3053 6.5118 1.3743 24 6 4.0560 2.5170 -0.0055 25 6 5.5608 2.5981 -0.0115 26 6 3.4311 1.2847 0.0004 27 6 4.2537 0.0221 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0002 32 1 0.9771 5.2209 -1.0266 33 1 0.1238 4.6697 0.4351 34 1 1.6127 5.6337 0.5839 35 1 3.2980 5.7768 -0.3742 36 1 4.8659 4.9780 -0.6428 37 1 2.5537 4.7461 2.1722 38 1 2.7009 6.4945 1.8737 39 1 4.1916 4.9171 4.0206 40 1 2.8130 6.0088 4.2982 41 1 4.9983 7.1313 4.7496 42 1 4.1148 7.9087 3.4126 43 1 9.1298 9.2291 4.5285 44 1 4.7720 7.3981 1.0304 45 1 6.1461 6.3134 0.7095 46 1 5.9278 2.6161 1.0147 47 1 5.9694 1.7298 -0.5284 48 1 5.8736 3.5072 -0.5252 49 1 4.4521 -0.2825 -1.0269 50 1 5.1977 0.2036 0.5146 51 1 3.7063 -0.7681 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138730160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = -45.086735 kcal Electronic energy + Delta-G solvation = -27925.260927 eV Core-core repulsion = 24402.219194 eV Total energy + Delta-G solvation = -3523.041733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55894 -40.04597 -38.68807 -35.80946 -35.08247 -34.09766 -32.15334 -31.98178 -30.16079 -28.98596 -28.04138 -26.86946 -26.67091 -25.28568 -23.73912 -22.99801 -21.36418 -20.90427 -20.42453 -18.93443 -18.14828 -17.79213 -17.08667 -16.67664 -16.27405 -16.02106 -15.66501 -15.18411 -15.11926 -14.81189 -14.70199 -14.59386 -14.50942 -14.17158 -14.04367 -13.78070 -13.67926 -13.58277 -13.47172 -13.07513 -12.95542 -12.83571 -12.68849 -12.60881 -12.54873 -12.36742 -12.20561 -11.86881 -11.80102 -11.68516 -11.54391 -11.47743 -11.28843 -11.01028 -10.77236 -10.60574 -9.36363 -9.14270 -8.81966 -8.27035 -6.29481 0.40651 0.48481 1.35942 1.38841 1.51491 2.38131 2.42540 2.65237 3.09437 3.26646 3.80392 3.81150 3.98309 4.10864 4.16116 4.19679 4.26219 4.35409 4.36628 4.39781 4.41301 4.47630 4.49928 4.62990 4.68029 4.74124 4.74811 4.77615 4.80305 4.84425 4.85514 4.87107 4.90626 4.94411 5.00097 5.03175 5.11215 5.12843 5.23210 5.25047 5.28802 5.43813 5.50270 5.57571 5.59480 5.68563 5.79089 5.83682 5.93695 6.21126 6.32560 6.42323 6.52181 6.78788 7.36786 8.89938 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.003496 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.195585 B = 8006.322656 C = 8501.137792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.120 3.880 4 C -0.215 4.215 5 C -0.047 4.047 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.097 3.903 9 N -0.535 5.535 10 C 0.066 3.934 11 C -0.114 4.114 12 C -0.110 4.110 13 C 0.022 3.978 14 H 0.031 0.969 15 C -0.512 4.512 16 H 0.030 0.970 17 C 0.015 3.985 18 N -0.952 5.952 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.239 1.239 23 C 0.086 3.914 24 C -0.031 4.031 25 C -0.110 4.110 26 C -0.144 4.144 27 C -0.099 4.099 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.264 0.736 44 H 0.015 0.985 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 -19.118 -8.919 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.075 3.925 4 C -0.234 4.234 5 C -0.048 4.048 6 C -0.180 4.180 7 C -0.121 4.121 8 C -0.030 4.030 9 N -0.260 5.260 10 C -0.061 4.061 11 C -0.151 4.151 12 C -0.149 4.149 13 C 0.003 3.997 14 H 0.049 0.951 15 C -0.551 4.551 16 H 0.049 0.951 17 C -0.182 4.182 18 N -0.592 5.592 19 Si 0.761 3.239 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.162 1.162 23 C -0.041 4.041 24 C -0.032 4.032 25 C -0.166 4.166 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.163 0.837 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.599 -19.619 -8.642 27.737 hybrid contribution 0.030 1.023 0.328 1.075 sum -17.569 -18.597 -8.314 26.900 Atomic orbital electron populations 1.23289 0.76853 1.05331 1.01981 1.86021 1.23025 1.26611 1.88736 1.18896 0.91849 0.84648 0.97150 1.21177 1.00546 0.91176 1.10476 1.19707 0.92952 0.95401 0.96722 1.21057 0.99588 0.94230 1.03149 1.19416 0.92880 0.94341 1.05424 1.20965 0.98934 0.93082 0.89970 1.61942 1.16313 1.37978 1.09724 1.22109 0.91742 0.99444 0.92828 1.21631 0.99007 0.98075 0.96434 1.21778 0.96928 0.97067 0.99081 1.19073 0.93332 0.94603 0.92726 0.95054 1.21273 1.15309 1.06161 1.12323 0.95120 1.25842 0.95396 0.97755 0.99218 1.70067 1.23905 1.28974 1.36263 0.85892 0.79824 0.80091 0.78072 1.19870 1.21579 1.16184 1.21880 0.94591 0.89619 0.98039 1.19542 0.96530 0.91090 0.96045 1.20803 0.90358 1.02847 1.02593 1.19280 0.91125 0.96078 1.08017 1.20574 0.98911 0.93602 1.02418 0.92175 0.91919 0.86389 0.83716 0.90215 0.90099 0.91365 0.93665 0.90098 0.90035 0.95028 0.92607 0.90481 0.94486 0.93870 0.92689 0.96722 0.92073 0.91353 0.90351 0.91435 0.90955 0.91078 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.80 9.54 -92.37 -0.88 -7.68 16 3 C 0.12 2.80 6.66 22.51 0.15 2.95 16 4 C -0.22 -4.56 8.67 22.37 0.19 -4.37 16 5 C -0.05 -1.08 5.02 -19.88 -0.10 -1.18 16 6 C -0.12 -2.31 8.64 71.24 0.62 -1.69 16 7 C -0.12 -3.12 4.69 -19.85 -0.09 -3.22 16 8 C 0.10 2.70 4.27 85.56 0.37 3.07 16 9 N -0.54 -17.59 4.63 -900.91 -4.17 -21.76 16 10 C 0.07 2.01 3.98 86.33 0.34 2.36 16 11 C -0.11 -3.78 6.09 30.65 0.19 -3.60 16 12 C -0.11 -4.60 4.96 30.67 0.15 -4.45 16 13 C 0.02 1.02 1.79 -11.49 -0.02 1.00 16 14 H 0.03 1.49 5.70 -2.39 -0.01 1.48 16 15 C -0.51 -29.14 8.87 25.60 0.23 -28.91 16 16 H 0.03 1.93 8.05 -2.91 -0.02 1.91 16 17 C 0.01 0.85 5.47 84.65 0.46 1.32 16 18 N -0.95 -59.90 13.96 21.45 0.30 -59.61 16 19 Si 0.94 44.94 26.41 68.60 1.81 46.75 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.24 -10.65 5.86 99.48 0.58 -10.07 16 23 C 0.09 3.43 4.72 86.32 0.41 3.84 16 24 C -0.03 -0.82 5.88 -19.88 -0.12 -0.93 16 25 C -0.11 -2.68 8.78 71.23 0.63 -2.05 16 26 C -0.14 -3.56 5.89 -19.77 -0.12 -3.68 16 27 C -0.10 -2.02 8.96 71.23 0.64 -1.38 16 28 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.07 1.43 3.93 -2.39 -0.01 1.42 16 35 H 0.05 1.19 6.28 -2.39 -0.02 1.18 16 36 H 0.08 2.23 6.13 -2.39 -0.01 2.22 16 37 H 0.08 2.27 5.82 -2.39 -0.01 2.25 16 38 H 0.03 0.94 7.16 -2.39 -0.02 0.92 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.61 6.75 -2.39 -0.02 1.60 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 1.58 6.72 -2.39 -0.02 1.57 16 48 H 0.07 1.68 6.09 -2.38 -0.01 1.67 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.37 6.72 -2.39 -0.02 1.35 16 51 H 0.06 1.32 7.53 -2.38 -0.02 1.30 16 Total: -1.00 -67.35 375.77 2.88 -64.47 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.79 Total: 17.40 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 5.03 Total: -39.57 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.87 Total: -81.37 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.88 Total: -7.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.81 Total: 46.75 kcal Total: -67.35 2.88 -64.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138730160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.384 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds