Wall clock time and date at job start Tue Mar 31 2020 12:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35907 * 117.00125 * 2 1 4 4 C 1.38758 * 120.04922 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.93812 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05775 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94356 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46739 * 90.00325 * 7 6 5 9 9 C 1.46849 * 111.00247 * 294.20622 * 8 7 6 10 10 C 1.53030 * 109.52721 * 174.16362 * 9 8 7 11 11 C 1.53124 * 109.27907 * 59.18009 * 10 9 8 12 12 C 1.50697 * 109.57716 * 182.41157 * 11 10 9 13 13 H 1.07998 * 120.00394 * 119.71585 * 12 11 10 14 14 C 1.37879 * 119.99912 * 299.71644 * 12 11 10 15 15 N 1.31518 * 120.00036 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99883 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47133 * 90.00162 * 16 14 12 18 18 H 1.48500 * 109.46866 * 210.00131 * 16 14 12 19 19 H 1.48501 * 109.46781 * 329.99961 * 16 14 12 20 20 C 1.53118 * 109.16054 * 302.34938 * 11 10 9 21 21 C 1.46848 * 110.99942 * 169.99851 * 8 7 6 22 22 C 1.38248 * 120.11355 * 359.79027 * 6 5 4 23 23 C 1.38168 * 120.05110 * 0.46538 * 22 6 5 24 24 C 1.50703 * 120.02561 * 179.79112 * 23 22 6 25 25 C 1.53002 * 109.46966 * 59.72233 * 24 23 22 26 26 C 1.53000 * 109.46912 * 299.72320 * 24 23 22 27 27 H 1.08999 * 109.47301 * 59.99824 * 1 2 3 28 28 H 1.08997 * 109.46584 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46978 * 299.99692 * 1 2 3 30 30 H 1.07993 * 120.03365 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96993 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47058 * 210.00080 * 7 6 5 33 33 H 1.08992 * 109.46855 * 330.00088 * 7 6 5 34 34 H 1.09002 * 109.46483 * 294.18472 * 9 8 7 35 35 H 1.09002 * 109.45682 * 54.14776 * 9 8 7 36 36 H 1.09001 * 109.50526 * 299.24036 * 10 9 8 37 37 H 1.09004 * 109.54070 * 179.14225 * 10 9 8 38 38 H 1.08997 * 109.51806 * 62.25018 * 11 10 9 39 39 H 0.96998 * 119.99370 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.50285 * 297.71175 * 20 11 10 41 41 H 1.08997 * 109.53484 * 177.61434 * 20 11 10 42 42 H 1.08996 * 109.46539 * 305.85813 * 21 8 7 43 43 H 1.09006 * 109.46250 * 65.83106 * 21 8 7 44 44 H 1.07998 * 119.97211 * 180.23381 * 22 6 5 45 45 H 1.09002 * 109.47152 * 179.72092 * 24 23 22 46 46 H 1.09002 * 109.47075 * 299.99352 * 25 24 23 47 47 H 1.08996 * 109.47407 * 60.00310 * 25 24 23 48 48 H 1.09000 * 109.46986 * 180.02562 * 25 24 23 49 49 H 1.08992 * 109.47399 * 59.99914 * 26 24 23 50 50 H 1.09004 * 109.46724 * 180.02562 * 26 24 23 51 51 H 1.09001 * 109.47194 * 299.99742 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0187 -0.0017 8 7 4.2076 5.4564 1.3829 9 6 2.9323 5.7088 2.0657 10 6 3.1947 6.0204 3.5408 11 6 4.1024 7.2492 3.6442 12 6 4.4134 7.5268 5.0924 13 1 5.4366 7.5117 5.4376 14 6 3.3915 7.8000 5.9769 15 7 3.6629 8.0427 7.2406 16 14 1.6216 7.8268 5.3798 17 1 1.0354 6.4684 5.5079 18 1 0.8369 8.7840 6.2003 19 1 1.5858 8.2492 3.9566 20 6 5.4037 6.9782 2.8843 21 6 5.0772 6.6388 1.4282 22 6 4.0559 2.5172 0.0049 23 6 3.4311 1.2849 0.0001 24 6 4.2537 0.0222 0.0013 25 6 5.1363 -0.0102 1.2507 26 6 5.1366 -0.0124 -1.2478 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2128 2.3204 -0.0005 31 1 1.3339 4.5114 -0.0011 32 1 4.9441 4.9378 -0.5151 33 1 3.3581 5.7458 -0.5166 34 1 2.4320 6.5572 1.5987 35 1 2.2980 4.8257 1.9883 36 1 3.6825 5.1670 4.0118 37 1 2.2494 6.2227 4.0444 38 1 3.5987 8.1118 3.2080 39 1 2.9440 8.2345 7.8628 40 1 5.9263 6.1399 3.3449 41 1 6.0369 7.8647 2.9182 42 1 6.0008 6.4314 0.8877 43 1 4.5669 7.4830 0.9643 44 1 5.1343 2.5754 0.0091 45 1 3.5910 -0.8432 0.0020 46 1 5.7991 0.8551 1.2499 47 1 4.5074 0.0144 2.1406 48 1 5.7317 -0.9233 1.2513 49 1 5.7992 0.8530 -1.2485 50 1 5.7313 -0.9259 -1.2472 51 1 4.5078 0.0107 -2.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139618102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:30 Heat of formation + Delta-G solvation = -24.758330 kcal Electronic energy + Delta-G solvation = -27448.067930 eV Core-core repulsion = 23925.907703 eV Total energy + Delta-G solvation = -3522.160227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53041 -38.73804 -37.55422 -35.64635 -33.92719 -31.89067 -30.36916 -30.26422 -29.82133 -27.73559 -27.18884 -26.38104 -24.10729 -23.61580 -22.47434 -21.60455 -20.78625 -19.79009 -18.78820 -18.10725 -16.68525 -16.59646 -15.92477 -15.70301 -15.29204 -14.56509 -14.51920 -14.45877 -14.27166 -13.90907 -13.57604 -13.50240 -13.47086 -13.03053 -12.89993 -12.52408 -12.37547 -12.20979 -12.18932 -11.99920 -11.84269 -11.71091 -11.50766 -11.27213 -11.24971 -10.94156 -10.84538 -10.66860 -10.54378 -10.49501 -10.03879 -9.86762 -9.58068 -9.03876 -8.91866 -8.76945 -8.47846 -8.12636 -7.84066 -6.02748 -4.00568 1.32829 1.39914 3.14848 3.29265 3.38660 3.41105 3.64572 4.43799 4.45355 4.54899 4.66438 4.79723 4.91331 4.94284 5.04054 5.12611 5.15343 5.25509 5.26084 5.29297 5.35737 5.52870 5.54785 5.56507 5.61391 5.67700 5.74712 5.76285 5.78961 5.88229 5.95056 5.95655 6.05805 6.12559 6.15127 6.21393 6.22884 6.32297 6.40735 6.46805 6.49901 6.67485 6.75445 6.78730 6.88732 6.98607 7.27110 7.30131 7.45996 7.57738 7.69071 7.83868 8.58648 9.02261 9.60642 11.10905 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003474 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.540824 B = 8057.615987 C = 8681.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.102 4.102 7 C 0.096 3.904 8 N -0.527 5.527 9 C 0.053 3.947 10 C -0.115 4.115 11 C 0.013 3.987 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.299 1.299 19 H -0.268 1.268 20 C -0.096 4.096 21 C 0.057 3.943 22 C -0.056 4.056 23 C -0.108 4.108 24 C -0.049 4.049 25 C -0.144 4.144 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -15.603 -19.532 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.097 4.097 6 C -0.103 4.103 7 C -0.032 4.032 8 N -0.252 5.252 9 C -0.074 4.074 10 C -0.152 4.152 11 C -0.006 4.006 12 C -0.546 4.546 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.074 4.074 23 C -0.109 4.109 24 C -0.067 4.067 25 C -0.201 4.201 26 C -0.199 4.199 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.146 0.854 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.928 -16.108 -19.103 25.158 hybrid contribution -1.941 0.893 -0.487 2.191 sum -4.869 -15.215 -19.590 25.278 Atomic orbital electron populations 1.23019 0.78757 1.03636 1.01309 1.86029 1.20984 1.27042 1.88989 1.18782 0.91797 0.83977 0.97718 1.21120 0.99705 0.92281 1.09324 1.20834 0.94163 0.96896 0.97780 1.19660 0.93131 0.95093 1.02370 1.20968 0.99323 0.92261 0.90632 1.61956 1.15374 1.34784 1.13099 1.22256 0.89976 0.98640 0.96552 1.21995 0.99757 1.01219 0.92279 1.19181 0.92189 0.92596 0.96600 1.21075 0.95399 1.47086 0.91083 0.90869 1.25023 0.98828 0.94693 0.94737 1.69906 1.32567 1.48705 1.03056 0.86858 0.85532 0.77175 0.78726 1.20609 1.22633 1.19277 1.21486 0.99190 1.00538 0.92124 1.22195 0.95610 0.89991 0.99247 1.20660 0.99798 0.90169 0.96779 1.19171 0.90117 0.95675 1.05889 1.19934 0.96090 0.95072 0.95635 1.21859 0.99363 1.01748 0.97115 1.21846 0.99257 1.01719 0.97065 0.92870 0.88476 0.92685 0.85779 0.86208 0.90322 0.94625 0.95968 0.91587 0.91351 0.93571 0.96158 0.92789 0.91795 0.92397 0.91814 0.95669 0.85373 0.90023 0.92238 0.92518 0.92656 0.92468 0.92587 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.60 9.26 -19.45 -0.18 -3.78 16 3 C 0.12 1.53 6.66 -39.22 -0.26 1.26 16 4 C -0.21 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.08 -1.00 7.87 -39.61 -0.31 -1.31 16 6 C -0.10 -1.35 4.89 -104.60 -0.51 -1.86 16 7 C 0.10 1.28 5.12 -4.97 -0.03 1.26 16 8 N -0.53 -8.74 4.65 -236.12 -1.10 -9.84 16 9 C 0.05 0.98 5.15 -3.84 -0.02 0.96 16 10 C -0.11 -2.55 4.84 -26.65 -0.13 -2.68 16 11 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 12 C -0.51 -14.45 9.15 -34.44 -0.31 -14.77 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 14 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 15 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 16 Si 0.89 22.37 24.37 -169.99 -4.14 18.23 16 17 H -0.28 -6.88 6.89 56.52 0.39 -6.49 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 20 C -0.10 -1.92 5.32 -26.65 -0.14 -2.06 16 21 C 0.06 0.95 5.46 -3.84 -0.02 0.93 16 22 C -0.06 -0.70 8.36 -39.60 -0.33 -1.03 16 23 C -0.11 -1.33 4.79 -104.47 -0.50 -1.83 16 24 C -0.05 -0.52 3.06 -91.77 -0.28 -0.80 16 25 C -0.14 -1.49 9.00 37.16 0.33 -1.15 16 26 C -0.14 -1.26 9.01 37.16 0.33 -0.93 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 30 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 31 H 0.12 1.43 7.95 -52.48 -0.42 1.01 16 32 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 33 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.15 5.74 -51.93 -0.30 0.85 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.05 1.08 3.38 -51.93 -0.18 0.91 16 38 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 1.48 7.10 -52.49 -0.37 1.10 16 45 H 0.08 0.89 6.99 -51.93 -0.36 0.53 16 46 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.49 7.41 -51.93 -0.38 0.11 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -31.41 383.99 -9.63 -41.04 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.97 Total: -0.57 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.80 Total: -23.56 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.32 Total: -37.14 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.18 Total: -3.78 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.41 -9.63 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139618102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.277 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds