Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35907 * 117.00125 * 2 1 4 4 C 1.38758 * 120.04922 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.93812 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05775 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94356 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46739 * 90.00325 * 7 6 5 9 9 C 1.46849 * 111.00247 * 294.20622 * 8 7 6 10 10 C 1.53030 * 109.52721 * 174.16362 * 9 8 7 11 11 C 1.53124 * 109.27907 * 59.18009 * 10 9 8 12 12 C 1.50697 * 109.57716 * 182.41157 * 11 10 9 13 13 H 1.07998 * 120.00394 * 119.71585 * 12 11 10 14 14 C 1.37879 * 119.99912 * 299.71644 * 12 11 10 15 15 N 1.31518 * 120.00036 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99883 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47133 * 90.00162 * 16 14 12 18 18 H 1.48500 * 109.46866 * 210.00131 * 16 14 12 19 19 H 1.48501 * 109.46781 * 329.99961 * 16 14 12 20 20 C 1.53118 * 109.16054 * 302.34938 * 11 10 9 21 21 C 1.46848 * 110.99942 * 169.99851 * 8 7 6 22 22 C 1.38248 * 120.11355 * 359.79027 * 6 5 4 23 23 C 1.38168 * 120.05110 * 0.46538 * 22 6 5 24 24 C 1.50703 * 120.02561 * 179.79112 * 23 22 6 25 25 C 1.53002 * 109.46966 * 59.72233 * 24 23 22 26 26 C 1.53000 * 109.46912 * 299.72320 * 24 23 22 27 27 H 1.08999 * 109.47301 * 59.99824 * 1 2 3 28 28 H 1.08997 * 109.46584 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46978 * 299.99692 * 1 2 3 30 30 H 1.07993 * 120.03365 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96993 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47058 * 210.00080 * 7 6 5 33 33 H 1.08992 * 109.46855 * 330.00088 * 7 6 5 34 34 H 1.09002 * 109.46483 * 294.18472 * 9 8 7 35 35 H 1.09002 * 109.45682 * 54.14776 * 9 8 7 36 36 H 1.09001 * 109.50526 * 299.24036 * 10 9 8 37 37 H 1.09004 * 109.54070 * 179.14225 * 10 9 8 38 38 H 1.08997 * 109.51806 * 62.25018 * 11 10 9 39 39 H 0.96998 * 119.99370 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.50285 * 297.71175 * 20 11 10 41 41 H 1.08997 * 109.53484 * 177.61434 * 20 11 10 42 42 H 1.08996 * 109.46539 * 305.85813 * 21 8 7 43 43 H 1.09006 * 109.46250 * 65.83106 * 21 8 7 44 44 H 1.07998 * 119.97211 * 180.23381 * 22 6 5 45 45 H 1.09002 * 109.47152 * 179.72092 * 24 23 22 46 46 H 1.09002 * 109.47075 * 299.99352 * 25 24 23 47 47 H 1.08996 * 109.47407 * 60.00310 * 25 24 23 48 48 H 1.09000 * 109.46986 * 180.02562 * 25 24 23 49 49 H 1.08992 * 109.47399 * 59.99914 * 26 24 23 50 50 H 1.09004 * 109.46724 * 180.02562 * 26 24 23 51 51 H 1.09001 * 109.47194 * 299.99742 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0187 -0.0017 8 7 4.2076 5.4564 1.3829 9 6 2.9323 5.7088 2.0657 10 6 3.1947 6.0204 3.5408 11 6 4.1024 7.2492 3.6442 12 6 4.4134 7.5268 5.0924 13 1 5.4366 7.5117 5.4376 14 6 3.3915 7.8000 5.9769 15 7 3.6629 8.0427 7.2406 16 14 1.6216 7.8268 5.3798 17 1 1.0354 6.4684 5.5079 18 1 0.8369 8.7840 6.2003 19 1 1.5858 8.2492 3.9566 20 6 5.4037 6.9782 2.8843 21 6 5.0772 6.6388 1.4282 22 6 4.0559 2.5172 0.0049 23 6 3.4311 1.2849 0.0001 24 6 4.2537 0.0222 0.0013 25 6 5.1363 -0.0102 1.2507 26 6 5.1366 -0.0124 -1.2478 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2128 2.3204 -0.0005 31 1 1.3339 4.5114 -0.0011 32 1 4.9441 4.9378 -0.5151 33 1 3.3581 5.7458 -0.5166 34 1 2.4320 6.5572 1.5987 35 1 2.2980 4.8257 1.9883 36 1 3.6825 5.1670 4.0118 37 1 2.2494 6.2227 4.0444 38 1 3.5987 8.1118 3.2080 39 1 2.9440 8.2345 7.8628 40 1 5.9263 6.1399 3.3449 41 1 6.0369 7.8647 2.9182 42 1 6.0008 6.4314 0.8877 43 1 4.5669 7.4830 0.9643 44 1 5.1343 2.5754 0.0091 45 1 3.5910 -0.8432 0.0020 46 1 5.7991 0.8551 1.2499 47 1 4.5074 0.0144 2.1406 48 1 5.7317 -0.9233 1.2513 49 1 5.7992 0.8530 -1.2485 50 1 5.7313 -0.9259 -1.2472 51 1 4.5078 0.0107 -2.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139618102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = -42.942115 kcal Electronic energy + Delta-G solvation = -27448.856438 eV Core-core repulsion = 23925.907703 eV Total energy + Delta-G solvation = -3522.948735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40803 -40.02943 -38.53878 -36.63750 -35.50193 -33.76149 -31.81171 -31.42945 -30.79291 -28.68459 -27.93777 -27.75379 -25.55298 -24.53104 -23.93897 -23.06718 -21.88285 -20.67133 -20.43643 -18.93727 -18.82706 -17.47890 -17.29193 -16.62765 -16.30891 -16.11350 -15.73157 -15.46386 -15.27131 -15.07635 -14.86025 -14.74312 -14.63748 -14.36743 -14.27289 -13.96175 -13.52365 -13.35809 -13.19664 -13.03700 -12.99282 -12.84903 -12.59703 -12.51544 -12.42574 -12.14811 -12.02394 -11.95949 -11.82002 -11.67610 -11.49207 -11.38184 -11.36498 -10.96723 -10.79641 -10.61059 -9.70067 -9.22905 -8.90486 -8.30063 -6.32583 0.42286 0.47386 1.27885 1.32113 1.43118 2.31312 2.41265 2.67865 3.05408 3.24162 3.71675 3.80086 3.92522 4.12584 4.14379 4.16709 4.24881 4.25476 4.35147 4.36439 4.39732 4.41004 4.46386 4.50184 4.62240 4.69737 4.72524 4.73528 4.76075 4.80911 4.84317 4.84879 4.95473 4.95789 4.98057 5.03671 5.14439 5.18741 5.22927 5.27621 5.30199 5.42230 5.43404 5.54264 5.63812 5.67805 5.74524 5.78642 5.88454 6.20662 6.29283 6.33648 6.48471 6.74674 7.32475 8.87250 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003474 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.540824 B = 8057.615987 C = 8681.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.112 3.888 4 C -0.210 4.210 5 C -0.088 4.088 6 C -0.115 4.115 7 C 0.100 3.900 8 N -0.538 5.538 9 C 0.064 3.936 10 C -0.112 4.112 11 C 0.013 3.987 12 C -0.516 4.516 13 H 0.032 0.968 14 C 0.009 3.991 15 N -0.952 5.952 16 Si 0.950 3.050 17 H -0.269 1.269 18 H -0.298 1.298 19 H -0.247 1.247 20 C -0.092 4.092 21 C 0.065 3.935 22 C -0.061 4.061 23 C -0.119 4.119 24 C -0.047 4.047 25 C -0.141 4.141 26 C -0.137 4.137 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.033 0.967 44 H 0.136 0.864 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 -16.563 -22.443 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.066 3.934 4 C -0.229 4.229 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.026 4.026 8 N -0.263 5.263 9 C -0.064 4.064 10 C -0.150 4.150 11 C -0.006 4.006 12 C -0.554 4.554 13 H 0.050 0.950 14 C -0.187 4.187 15 N -0.593 5.593 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.226 1.226 19 H -0.171 1.171 20 C -0.130 4.130 21 C -0.062 4.062 22 C -0.079 4.079 23 C -0.120 4.120 24 C -0.065 4.065 25 C -0.198 4.198 26 C -0.194 4.194 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.052 0.948 44 H 0.153 0.847 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.081 -17.080 -22.045 28.185 hybrid contribution -1.506 1.123 0.468 1.936 sum -5.587 -15.957 -21.577 27.412 Atomic orbital electron populations 1.23282 0.76974 1.05325 1.01881 1.86016 1.22884 1.26685 1.88836 1.19002 0.92183 0.84588 0.97588 1.21348 1.00732 0.91960 1.08838 1.21005 0.94240 0.97478 0.97918 1.19732 0.93461 0.95144 1.03271 1.21009 1.00678 0.92367 0.88591 1.61887 1.14446 1.34631 1.15368 1.22060 0.91175 0.99389 0.93759 1.21844 0.98355 0.99471 0.95306 1.19148 0.94495 0.93232 0.93756 1.21436 0.93609 1.46369 0.93964 0.95003 1.25899 1.03680 0.94435 0.94701 1.70061 1.34132 1.50537 1.04601 0.85820 0.79705 0.77625 0.79145 1.19506 1.22595 1.17113 1.21392 0.97148 1.00039 0.94460 1.22095 0.97162 0.90484 0.96442 1.20786 1.00233 0.90194 0.96728 1.19433 0.90568 0.96285 1.05692 1.19932 0.96064 0.94144 0.96388 1.21837 0.99161 1.02445 0.96387 1.21807 0.99052 1.02541 0.96021 0.91762 0.86369 0.92562 0.84026 0.85428 0.88435 0.93596 0.95253 0.90476 0.93216 0.94701 0.96387 0.92667 0.93301 0.92426 0.88807 0.94842 0.84666 0.90643 0.92476 0.94148 0.91113 0.92174 0.91290 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.02 9.26 -92.50 -0.86 -7.88 16 3 C 0.11 2.62 6.66 22.51 0.15 2.77 16 4 C -0.21 -4.62 9.04 22.37 0.20 -4.42 16 5 C -0.09 -2.03 7.87 22.25 0.18 -1.86 16 6 C -0.12 -2.76 4.89 -19.85 -0.10 -2.86 16 7 C 0.10 2.34 5.12 85.56 0.44 2.78 16 8 N -0.54 -16.35 4.65 -900.94 -4.19 -20.53 16 9 C 0.06 2.19 5.15 86.32 0.44 2.63 16 10 C -0.11 -4.86 4.84 30.65 0.15 -4.72 16 11 C 0.01 0.59 1.75 -11.46 -0.02 0.57 16 12 C -0.52 -30.24 9.15 25.60 0.23 -30.01 16 13 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 14 C 0.01 0.55 5.45 84.65 0.46 1.01 16 15 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 16 Si 0.95 46.27 24.37 68.60 1.67 47.94 16 17 H -0.27 -12.56 6.89 99.48 0.69 -11.88 16 18 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 20 C -0.09 -3.65 5.32 30.64 0.16 -3.49 16 21 C 0.07 1.98 5.46 86.32 0.47 2.46 16 22 C -0.06 -1.41 8.36 22.26 0.19 -1.23 16 23 C -0.12 -2.76 4.79 -19.77 -0.09 -2.86 16 24 C -0.05 -0.93 3.06 -11.54 -0.04 -0.96 16 25 C -0.14 -2.77 9.00 71.98 0.65 -2.12 16 26 C -0.14 -2.18 9.01 71.98 0.65 -1.53 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.74 7.66 -2.38 -0.02 0.72 16 30 H 0.14 2.47 6.30 -2.91 -0.02 2.45 16 31 H 0.13 2.68 7.95 -2.91 -0.02 2.66 16 32 H 0.10 1.92 7.93 -2.39 -0.02 1.90 16 33 H 0.05 1.01 8.07 -2.39 -0.02 0.99 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 2.48 5.74 -2.39 -0.01 2.47 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.03 1.58 3.38 -2.39 -0.01 1.57 16 38 H 0.02 0.86 7.19 -2.39 -0.02 0.85 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.32 8.01 -2.39 -0.02 2.30 16 43 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.14 2.84 7.10 -2.91 -0.02 2.82 16 45 H 0.08 1.57 6.99 -2.39 -0.02 1.56 16 46 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 47 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 0.92 7.41 -2.39 -0.02 0.90 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.46 383.99 2.97 -66.49 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.81 Total: 17.26 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 5.24 Total: -42.43 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.89 Total: -81.37 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.86 Total: -7.88 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -69.46 2.97 -66.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139618102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.553 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds