Wall clock time and date at job start Tue Mar 31 2020 12:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99561 * 2 1 4 4 C 1.38751 * 120.05735 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94712 * 179.74642 * 4 3 2 6 6 C 1.38289 * 120.05070 * 0.54907 * 5 4 3 7 7 C 1.50706 * 119.94473 * 179.72236 * 6 5 4 8 8 N 1.46893 * 109.47176 * 269.73081 * 7 6 5 9 9 C 1.46842 * 111.00439 * 45.78759 * 8 7 6 10 10 C 1.53043 * 109.52646 * 185.84258 * 9 8 7 11 11 C 1.53117 * 109.27487 * 300.82002 * 10 9 8 12 12 C 1.53117 * 109.16254 * 57.65332 * 11 10 9 13 13 H 1.09004 * 109.53393 * 62.30655 * 12 11 10 14 14 C 1.50706 * 109.50343 * 182.40401 * 12 11 10 15 15 H 1.07996 * 119.99723 * 119.80715 * 14 12 11 16 16 C 1.37875 * 119.99967 * 299.80594 * 14 12 11 17 17 N 1.31519 * 120.00032 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99971 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47048 * 59.99534 * 18 16 14 20 20 H 1.48502 * 109.47104 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47003 * 299.99923 * 18 16 14 22 22 C 1.46847 * 111.00094 * 170.00005 * 8 7 6 23 23 C 1.38238 * 120.11502 * 359.44858 * 6 5 4 24 24 C 1.38173 * 120.05608 * 0.27873 * 23 6 5 25 25 C 1.50695 * 120.03153 * 179.97438 * 24 23 6 26 26 C 1.52996 * 109.47150 * 299.99598 * 25 24 23 27 27 C 1.53007 * 109.46769 * 59.99823 * 25 24 23 28 28 H 1.09001 * 109.46523 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47237 * 299.99483 * 1 2 3 30 30 H 1.08995 * 109.47593 * 59.99866 * 1 2 3 31 31 H 1.08007 * 120.02644 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97639 * 180.27035 * 5 4 3 33 33 H 1.09001 * 109.46953 * 29.72540 * 7 6 5 34 34 H 1.09000 * 109.47318 * 149.72138 * 7 6 5 35 35 H 1.09007 * 109.46171 * 305.85708 * 9 8 7 36 36 H 1.09000 * 109.46602 * 65.82116 * 9 8 7 37 37 H 1.08997 * 109.50164 * 180.87986 * 10 9 8 38 38 H 1.08997 * 109.50459 * 60.76047 * 10 9 8 39 39 H 1.09006 * 109.52236 * 297.74640 * 11 10 9 40 40 H 1.08999 * 109.57567 * 177.59361 * 11 10 9 41 41 H 0.96996 * 119.99981 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.46136 * 294.17153 * 22 8 7 43 43 H 1.09001 * 109.46338 * 54.13973 * 22 8 7 44 44 H 1.08005 * 119.97654 * 180.29399 * 23 6 5 45 45 H 1.08999 * 109.46886 * 179.97438 * 25 24 23 46 46 H 1.09009 * 109.47309 * 60.00034 * 26 25 24 47 47 H 1.08998 * 109.47220 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.47451 * 299.99986 * 26 25 24 49 49 H 1.08993 * 109.47207 * 60.00508 * 27 25 24 50 50 H 1.08999 * 109.46430 * 180.02562 * 27 25 24 51 51 H 1.08999 * 109.47094 * 299.99478 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9206 3.6048 0.0048 6 6 3.3016 3.6759 -0.0009 7 6 3.9858 5.0187 -0.0014 8 7 4.2081 5.4545 -1.3865 9 6 3.0031 5.2535 -2.2013 10 6 3.3143 5.5799 -3.6638 11 6 3.7870 7.0326 -3.7679 12 6 5.0139 7.2272 -2.8727 13 1 5.8252 6.5889 -3.2224 14 6 5.4502 8.6689 -2.9235 15 1 5.4688 9.2596 -2.0197 16 6 5.8256 9.2335 -4.1240 17 7 5.8035 8.5139 -5.2247 18 14 6.3672 11.0202 -4.1870 19 1 7.5543 11.2086 -3.3150 20 1 6.7172 11.3824 -5.5840 21 1 5.2611 11.8897 -3.7119 22 6 4.6535 6.8530 -1.4332 23 6 4.0558 2.5174 -0.0003 24 6 3.4310 1.2850 0.0001 25 6 4.2537 0.0224 0.0001 26 6 5.1360 -0.0115 -1.2494 27 6 5.1368 -0.0109 1.2492 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2126 2.3203 -0.0005 32 1 1.3337 4.5115 0.0088 33 1 3.3576 5.7467 0.5121 34 1 4.9436 4.9387 0.5126 35 1 2.6799 4.2155 -2.1217 36 1 2.2093 5.9093 -1.8438 37 1 2.4156 5.4457 -4.2657 38 1 4.0984 4.9152 -4.0262 39 1 2.9888 7.6997 -3.4422 40 1 4.0507 7.2576 -4.8013 41 1 6.0672 8.9113 -6.0693 42 1 3.8519 7.5014 -1.0792 43 1 5.5289 6.9769 -0.7957 44 1 5.1343 2.5755 0.0001 45 1 3.5910 -0.8430 0.0009 46 1 5.7988 0.8540 -1.2498 47 1 5.7314 -0.9245 -1.2491 48 1 4.5069 0.0122 -2.1392 49 1 4.5082 0.0132 2.1393 50 1 5.7321 -0.9239 1.2489 51 1 5.7995 0.8545 1.2488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139621653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:48 Heat of formation + Delta-G solvation = -45.801342 kcal Electronic energy + Delta-G solvation = -27331.910122 eV Core-core repulsion = 23808.837402 eV Total energy + Delta-G solvation = -3523.072721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45871 -39.94741 -38.47687 -36.60595 -35.34242 -33.65826 -31.79864 -31.17133 -30.75414 -28.36229 -27.93948 -26.92802 -26.57428 -24.42759 -23.64004 -23.22048 -21.82826 -20.63800 -20.32193 -18.92064 -18.40962 -17.46711 -16.90215 -16.63433 -16.36476 -16.18699 -15.51910 -15.33801 -15.27578 -14.92132 -14.83971 -14.69421 -14.43285 -14.29974 -14.20431 -13.89994 -13.34794 -13.24917 -13.05307 -12.90585 -12.88227 -12.81879 -12.69202 -12.55096 -12.51212 -12.22136 -12.01796 -11.98849 -11.71817 -11.62704 -11.50290 -11.41000 -11.31583 -10.85746 -10.65549 -10.36476 -9.72182 -9.19885 -8.85347 -8.06674 -6.21040 0.40902 0.45730 1.42166 1.43558 1.51137 2.41962 2.43525 2.70298 3.20124 3.31340 3.71367 3.79077 3.90311 4.16641 4.19743 4.21631 4.27076 4.36017 4.37130 4.40619 4.42671 4.46187 4.50152 4.60664 4.70133 4.71287 4.75231 4.80143 4.83120 4.84516 4.90036 4.95941 4.98587 5.03750 5.09999 5.14959 5.19356 5.22153 5.29076 5.38631 5.41550 5.42469 5.52510 5.63393 5.64280 5.74843 5.85831 5.97879 6.13799 6.22341 6.35882 6.47098 6.49430 6.91700 7.46744 8.97881 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002865 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.972060 B = 9769.466009 C =10176.561043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.116 3.884 4 C -0.205 4.205 5 C -0.083 4.083 6 C -0.118 4.118 7 C 0.099 3.901 8 N -0.541 5.541 9 C 0.071 3.929 10 C -0.111 4.111 11 C -0.102 4.102 12 C 0.054 3.946 13 H -0.004 1.004 14 C -0.537 4.537 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.081 3.919 23 C -0.064 4.064 24 C -0.117 4.117 25 C -0.046 4.046 26 C -0.141 4.141 27 C -0.139 4.139 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 -18.518 12.650 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.071 3.929 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.118 4.118 7 C -0.028 4.028 8 N -0.266 5.266 9 C -0.057 4.057 10 C -0.149 4.149 11 C -0.140 4.140 12 C 0.036 3.964 13 H 0.014 0.986 14 C -0.575 4.575 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.046 4.046 23 C -0.082 4.082 24 C -0.118 4.118 25 C -0.065 4.065 26 C -0.198 4.198 27 C -0.196 4.196 28 H 0.137 0.863 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.147 0.853 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.439 -18.983 12.273 24.497 hybrid contribution -0.474 1.939 -0.156 2.002 sum -9.912 -17.045 12.116 23.143 Atomic orbital electron populations 1.23306 0.76834 1.05400 1.02012 1.86023 1.23005 1.26503 1.88763 1.18944 0.91956 0.84673 0.97336 1.21340 1.00864 0.91595 1.08564 1.20969 0.93756 0.97713 0.97766 1.19652 0.93740 0.94615 1.03816 1.21024 0.99842 0.92593 0.89367 1.62059 1.33093 1.21335 1.10078 1.22027 0.90300 1.00356 0.92978 1.21592 1.00015 0.97226 0.96053 1.21450 0.96873 0.93656 1.02053 1.18564 0.93261 0.94015 0.90600 0.98599 1.21502 1.44542 0.97554 0.93925 0.92936 1.25731 0.95576 1.01794 0.95428 1.70038 1.48740 1.37619 0.99130 0.85673 0.78889 0.80437 0.77014 1.19616 1.20992 1.19661 1.22001 0.97791 0.86117 0.98685 1.20750 1.00051 0.90371 0.97051 1.19401 0.90747 0.95999 1.05656 1.19936 0.96070 0.94198 0.96275 1.21837 0.99182 1.02307 0.96523 1.21820 0.99101 1.02428 0.96238 0.86339 0.91833 0.92212 0.83521 0.85475 0.94177 0.89874 0.90067 0.95755 0.91632 0.93496 0.95885 0.92459 0.93090 0.96522 0.92255 0.85289 0.90201 0.92918 0.91053 0.93704 0.92972 0.91176 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.70 9.26 -92.47 -0.86 -7.56 16 3 C 0.12 2.68 6.66 22.51 0.15 2.83 16 4 C -0.21 -4.40 9.04 22.36 0.20 -4.19 16 5 C -0.08 -2.00 7.81 22.25 0.17 -1.82 16 6 C -0.12 -3.13 4.11 -19.85 -0.08 -3.21 16 7 C 0.10 2.93 5.43 85.56 0.46 3.39 16 8 N -0.54 -20.00 4.80 -900.92 -4.32 -24.32 16 9 C 0.07 2.51 4.58 86.33 0.40 2.91 16 10 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 11 C -0.10 -5.04 5.03 30.67 0.15 -4.88 16 12 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 13 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 14 C -0.54 -30.20 8.56 25.60 0.22 -29.98 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -54.06 11.36 21.45 0.24 -53.82 16 18 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.08 3.51 4.65 86.33 0.40 3.91 16 23 C -0.06 -1.63 8.36 22.25 0.19 -1.44 16 24 C -0.12 -2.80 4.79 -19.77 -0.09 -2.90 16 25 C -0.05 -0.95 3.06 -11.54 -0.04 -0.98 16 26 C -0.14 -2.85 9.01 71.98 0.65 -2.20 16 27 C -0.14 -2.41 9.01 71.98 0.65 -1.76 16 28 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.65 7.66 -2.38 -0.02 0.63 16 30 H 0.06 0.67 7.66 -2.39 -0.02 0.66 16 31 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 32 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 34 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 35 H 0.08 2.64 5.65 -2.38 -0.01 2.63 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 3.19 6.16 -2.39 -0.01 3.17 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.51 8.12 -2.39 -0.02 2.49 16 44 H 0.13 3.22 7.10 -2.91 -0.02 3.20 16 45 H 0.08 1.65 6.99 -2.39 -0.02 1.63 16 46 H 0.05 1.13 7.39 -2.38 -0.02 1.11 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.05 0.99 7.39 -2.39 -0.02 0.97 16 Total: -1.00 -63.72 390.06 3.12 -60.60 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.88 Total: 18.20 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 5.15 Total: -39.29 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -4.08 Total: -78.14 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.86 Total: -7.56 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.72 3.12 -60.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139621653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds