Wall clock time and date at job start Tue Mar 31 2020 12:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99950 * 2 1 4 4 C 1.38759 * 120.05129 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.93912 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05468 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94028 * 179.74279 * 6 5 4 8 8 N 1.46896 * 109.47392 * 89.99991 * 7 6 5 9 9 C 1.46842 * 111.00119 * 66.04590 * 8 7 6 10 10 C 1.53035 * 109.52434 * 174.16488 * 9 8 7 11 11 C 1.53116 * 109.28157 * 59.17931 * 10 9 8 12 12 C 1.53126 * 109.15939 * 302.34384 * 11 10 9 13 13 H 1.09002 * 109.50259 * 297.71798 * 12 11 10 14 14 C 1.50695 * 109.50294 * 177.63536 * 12 11 10 15 15 H 1.08004 * 119.99886 * 245.43844 * 14 12 11 16 16 C 1.37871 * 119.99973 * 65.43593 * 14 12 11 17 17 N 1.31510 * 120.00464 * 9.57026 * 16 14 12 18 18 Si 1.86802 * 120.00007 * 189.56199 * 16 14 12 19 19 H 1.48512 * 109.46857 * 94.99381 * 18 16 14 20 20 H 1.48500 * 109.47661 * 214.99192 * 18 16 14 21 21 H 1.48500 * 109.47490 * 334.99566 * 18 16 14 22 22 C 1.46847 * 110.99728 * 301.83667 * 8 7 6 23 23 C 1.38239 * 120.11359 * 0.02562 * 6 5 4 24 24 C 1.38159 * 120.05920 * 0.02562 * 23 6 5 25 25 C 1.50702 * 120.03162 * 180.02562 * 24 23 6 26 26 C 1.53003 * 109.47063 * 299.95537 * 25 24 23 27 27 C 1.52998 * 109.46696 * 59.95601 * 25 24 23 28 28 H 1.08991 * 109.47067 * 59.99861 * 1 2 3 29 29 H 1.09003 * 109.46443 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46673 * 299.99545 * 1 2 3 31 31 H 1.07998 * 120.03049 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.97171 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47481 * 209.99935 * 7 6 5 34 34 H 1.08998 * 109.47285 * 329.99782 * 7 6 5 35 35 H 1.09003 * 109.46276 * 294.18055 * 9 8 7 36 36 H 1.09002 * 109.46777 * 54.14442 * 9 8 7 37 37 H 1.09011 * 109.50423 * 179.11954 * 10 9 8 38 38 H 1.09001 * 109.50346 * 299.22975 * 10 9 8 39 39 H 1.08997 * 109.52281 * 62.25002 * 11 10 9 40 40 H 1.09001 * 109.52598 * 182.44075 * 11 10 9 41 41 H 0.97001 * 120.00573 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46328 * 305.84899 * 22 8 7 43 43 H 1.08993 * 109.46830 * 65.82469 * 22 8 7 44 44 H 1.08000 * 119.97189 * 179.97438 * 23 6 5 45 45 H 1.09002 * 109.46804 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46647 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.46940 * 299.99844 * 26 25 24 48 48 H 1.08995 * 109.47188 * 59.99963 * 26 25 24 49 49 H 1.08996 * 109.47603 * 59.99944 * 27 25 24 50 50 H 1.09006 * 109.46606 * 179.97438 * 27 25 24 51 51 H 1.09002 * 109.47364 * 299.99497 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9859 5.0186 -0.0070 8 7 4.2084 5.4615 1.3758 9 6 5.1663 4.5847 2.0616 10 6 5.4838 5.1570 3.4449 11 6 4.1900 5.2644 4.2567 12 6 3.1920 6.1434 3.4978 13 1 3.6006 7.1482 3.3898 14 6 1.8949 6.2071 4.2622 15 1 0.9981 5.7775 3.8408 16 6 1.8530 6.8139 5.4995 17 7 2.8890 7.4993 5.9312 18 14 0.3246 6.6626 6.5627 19 1 0.4934 5.5352 7.5147 20 1 0.1215 7.9237 7.3201 21 1 -0.8563 6.4084 5.6989 22 6 2.9409 5.5424 2.1128 23 6 4.0559 2.5172 -0.0011 24 6 3.4312 1.2849 -0.0016 25 6 4.2538 0.0222 -0.0016 26 6 5.1362 -0.0116 -1.2511 27 6 5.1368 -0.0111 1.2474 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2127 2.3203 0.0005 32 1 1.3339 4.5114 0.0008 33 1 4.9438 4.9359 -0.5205 34 1 3.3578 5.7439 -0.5242 35 1 4.7344 3.5898 2.1705 36 1 6.0834 4.5202 1.4760 37 1 6.1828 4.4978 3.9598 38 1 5.9285 6.1462 3.3362 39 1 3.7656 4.2706 4.3989 40 1 4.4049 5.7119 5.2272 41 1 2.8597 7.9259 6.8019 42 1 2.2416 6.1737 1.5645 43 1 2.5194 4.5432 2.2216 44 1 5.1343 2.5753 -0.0019 45 1 3.5910 -0.8432 -0.0016 46 1 5.7315 -0.9247 -1.2508 47 1 4.5070 0.0122 -2.1409 48 1 5.7988 0.8538 -1.2515 49 1 4.5082 0.0131 2.1376 50 1 5.7315 -0.9246 1.2476 51 1 5.7996 0.8543 1.2471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139621654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:51 Heat of formation + Delta-G solvation = -33.952910 kcal Electronic energy + Delta-G solvation = -28030.331698 eV Core-core repulsion = 24507.772763 eV Total energy + Delta-G solvation = -3522.558934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48688 -38.67603 -37.23232 -35.47687 -33.65660 -31.99013 -30.23135 -29.69202 -29.61830 -27.48901 -27.16378 -25.46188 -24.91091 -23.47341 -22.20881 -21.29117 -20.89711 -19.71617 -18.50830 -17.94297 -16.50363 -16.35698 -15.77906 -15.35033 -14.88811 -14.44294 -14.41633 -14.32419 -14.10176 -13.90509 -13.58832 -13.47778 -13.32902 -12.72231 -12.45234 -12.41309 -12.26565 -12.14768 -12.05812 -11.85563 -11.69477 -11.48913 -11.21375 -11.19222 -10.93273 -10.85500 -10.68983 -10.63775 -10.59622 -10.42568 -10.10835 -9.86290 -9.41611 -8.98127 -8.70985 -8.67199 -8.27410 -7.95036 -7.59472 -5.97306 -3.98346 1.45027 1.52614 3.25216 3.32061 3.39462 3.41872 3.81353 4.44871 4.63428 4.70402 4.76877 4.91596 5.03505 5.05844 5.18107 5.19166 5.24487 5.34991 5.35640 5.39201 5.45313 5.57763 5.63726 5.72221 5.75703 5.78926 5.83255 5.87775 5.96713 6.08277 6.12408 6.13762 6.21855 6.24203 6.30824 6.45548 6.49104 6.55231 6.56299 6.72384 6.77594 6.80232 6.87330 7.00300 7.23734 7.36614 7.41657 7.69969 7.78436 7.84753 8.05517 8.16168 8.52388 9.05986 9.64297 11.11933 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.004059 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.241537 B = 6895.799004 C = 7812.411180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.204 4.204 5 C -0.066 4.066 6 C -0.144 4.144 7 C 0.094 3.906 8 N -0.527 5.527 9 C 0.061 3.939 10 C -0.118 4.118 11 C -0.104 4.104 12 C 0.053 3.947 13 H 0.040 0.960 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.067 3.933 23 C -0.068 4.068 24 C -0.110 4.110 25 C -0.049 4.049 26 C -0.141 4.141 27 C -0.143 4.143 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.259 0.741 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -14.147 -14.191 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.034 4.034 8 N -0.249 5.249 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.142 4.142 12 C 0.034 3.966 13 H 0.058 0.942 14 C -0.553 4.553 15 H 0.070 0.930 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.060 4.060 23 C -0.087 4.087 24 C -0.111 4.111 25 C -0.067 4.067 26 C -0.198 4.198 27 C -0.200 4.200 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.141 0.859 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.037 -13.728 -14.040 19.742 hybrid contribution -1.621 -0.736 0.821 1.960 sum 0.416 -14.463 -13.219 19.599 Atomic orbital electron populations 1.23015 0.78757 1.03544 1.01405 1.86013 1.21005 1.27115 1.89056 1.18770 0.91762 0.83980 0.97855 1.21174 0.99766 0.92381 1.08983 1.20883 0.94135 0.96988 0.96514 1.20658 0.94084 0.97032 1.02793 1.21219 0.99291 0.90571 0.92303 1.62429 1.13005 1.48593 1.00849 1.22046 0.94730 0.94326 0.95612 1.21664 0.99278 1.00203 0.94403 1.21574 0.93542 0.98905 1.00203 1.18678 0.94445 0.95294 0.88166 0.94195 1.21106 0.94888 1.36794 1.02539 0.92979 1.24907 0.95959 0.94673 0.98012 1.69975 1.30240 1.32692 1.19495 0.86718 0.83801 0.77457 0.80845 1.20813 1.21306 1.19986 1.22331 0.88274 0.98712 0.96688 1.20677 0.99407 0.90545 0.98027 1.19122 0.90145 0.95542 1.06247 1.19921 0.96063 0.95220 0.95494 1.21840 0.99232 1.01588 0.97150 1.21852 0.99329 1.01573 0.97269 0.92862 0.88549 0.92607 0.85772 0.85814 0.90835 0.90400 0.95215 0.92646 0.93630 0.92031 0.95048 0.91045 0.93119 0.92539 0.95640 0.85873 0.90030 0.92651 0.92810 0.92576 0.92550 0.92650 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.06 9.26 -19.44 -0.18 -4.24 16 3 C 0.12 1.70 6.66 -39.21 -0.26 1.44 16 4 C -0.20 -2.84 9.04 -39.43 -0.36 -3.20 16 5 C -0.07 -0.98 8.01 -39.60 -0.32 -1.30 16 6 C -0.14 -2.11 4.03 -104.60 -0.42 -2.53 16 7 C 0.09 1.40 5.55 -4.98 -0.03 1.38 16 8 N -0.53 -9.64 4.86 -236.12 -1.15 -10.79 16 9 C 0.06 1.07 4.83 -3.84 -0.02 1.05 16 10 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 11 C -0.10 -2.47 5.09 -26.61 -0.14 -2.61 16 12 C 0.05 1.34 2.13 -91.69 -0.19 1.14 16 13 H 0.04 1.13 8.09 -51.93 -0.42 0.71 16 14 C -0.51 -14.23 8.48 -34.45 -0.29 -14.52 16 15 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 16 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 17 N -0.89 -25.68 12.18 55.43 0.68 -25.01 16 18 Si 0.88 21.45 29.55 -169.99 -5.02 16.43 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.07 1.42 3.76 -3.83 -0.01 1.40 16 23 C -0.07 -0.93 6.79 -39.61 -0.27 -1.20 16 24 C -0.11 -1.49 4.79 -104.48 -0.50 -1.99 16 25 C -0.05 -0.56 3.06 -91.77 -0.28 -0.84 16 26 C -0.14 -1.37 9.01 37.16 0.33 -1.03 16 27 C -0.14 -1.59 9.01 37.16 0.33 -1.25 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 31 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 32 H 0.12 1.77 8.01 -52.49 -0.42 1.35 16 33 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 34 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 36 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.88 6.98 -51.93 -0.36 1.52 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 43 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 44 H 0.12 1.54 7.08 -52.49 -0.37 1.16 16 45 H 0.08 0.98 6.99 -51.93 -0.36 0.61 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -29.75 388.61 -10.61 -40.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.11 Total: 0.93 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.68 Total: -23.53 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.47 Total: -35.79 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.18 Total: -4.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.75 -10.61 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139621654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.405 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds