Wall clock time and date at job start Tue Mar 31 2020 11:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47322 * 2 1 4 4 C 1.35904 * 117.00221 * 180.02562 * 3 2 1 5 5 C 1.38754 * 120.05523 * 0.25200 * 4 3 2 6 6 C 1.38120 * 119.94386 * 180.31931 * 5 4 3 7 7 C 1.38289 * 120.05315 * 359.68089 * 6 5 4 8 8 C 1.50704 * 119.93904 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47160 * 269.97365 * 8 7 6 10 10 C 1.46848 * 111.00220 * 294.21545 * 9 8 7 11 11 C 1.53040 * 109.52306 * 174.16058 * 10 9 8 12 12 C 1.53119 * 109.27685 * 59.17577 * 11 10 9 13 13 C 1.50700 * 109.57055 * 182.40730 * 12 11 10 14 14 H 1.08005 * 119.99597 * 119.72564 * 13 12 11 15 15 C 1.37876 * 120.00597 * 299.71619 * 13 12 11 16 16 N 1.31508 * 120.00276 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99683 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47089 * 89.99780 * 17 15 13 19 19 H 1.48501 * 109.46983 * 209.99988 * 17 15 13 20 20 H 1.48507 * 109.47085 * 329.99651 * 17 15 13 21 21 C 1.53116 * 109.16547 * 302.34782 * 12 11 10 22 22 C 1.46841 * 110.99974 * 170.00390 * 9 8 7 23 23 C 1.38240 * 120.11177 * 0.02562 * 7 6 5 24 24 C 1.38156 * 120.05896 * 0.02562 * 23 7 6 25 25 C 1.50698 * 120.03249 * 179.97438 * 24 23 7 26 26 C 1.53006 * 109.47184 * 265.00276 * 25 24 23 27 27 H 1.08999 * 109.47528 * 59.99709 * 1 2 3 28 28 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46858 * 300.00015 * 1 2 3 30 30 H 1.09004 * 109.47306 * 239.99714 * 2 1 3 31 31 H 1.09005 * 109.47267 * 119.99933 * 2 1 3 32 32 H 1.07998 * 120.02810 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.97273 * 179.69512 * 6 5 4 34 34 H 1.08991 * 109.47355 * 29.98070 * 8 7 6 35 35 H 1.09006 * 109.46696 * 149.97855 * 8 7 6 36 36 H 1.09002 * 109.46154 * 294.17417 * 10 9 8 37 37 H 1.09000 * 109.46115 * 54.14532 * 10 9 8 38 38 H 1.08999 * 109.50044 * 299.23891 * 11 10 9 39 39 H 1.08993 * 109.53575 * 179.14053 * 11 10 9 40 40 H 1.09000 * 109.51838 * 62.25605 * 12 11 10 41 41 H 0.97000 * 119.99829 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.50131 * 297.71482 * 21 12 11 43 43 H 1.08997 * 109.53413 * 177.61619 * 21 12 11 44 44 H 1.09008 * 109.46259 * 305.85922 * 22 9 8 45 45 H 1.09006 * 109.46597 * 65.83508 * 22 9 8 46 46 H 1.08005 * 119.96939 * 179.97438 * 23 7 6 47 47 H 1.09001 * 109.47612 * 145.00331 * 25 24 23 48 48 H 1.09001 * 109.47122 * 25.00162 * 25 24 23 49 49 H 1.09001 * 109.47002 * 299.99404 * 26 25 24 50 50 H 1.08993 * 109.46955 * 59.99842 * 26 25 24 51 51 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0063 6 6 5.5689 0.6094 -0.0002 7 6 6.0962 1.8878 0.0050 8 6 7.5902 2.0851 0.0111 9 7 8.0704 2.1463 1.3981 10 6 7.5524 3.3380 2.0823 11 6 7.9514 3.2937 3.5591 12 6 9.4777 3.2421 3.6691 13 6 9.8762 3.1387 5.1187 14 1 10.4423 2.2861 5.4637 15 6 9.5183 4.1326 6.0047 16 7 9.8664 4.0426 7.2697 17 14 8.5387 5.6072 5.4082 18 1 7.0870 5.3191 5.5300 19 1 8.8788 6.7940 6.2335 20 1 8.8716 5.8806 3.9870 21 6 9.9954 2.0188 2.9075 22 6 9.5372 2.1000 1.4497 23 6 5.2551 2.9849 0.0047 24 6 3.8851 2.8066 -0.0004 25 6 2.9688 4.0030 -0.0001 26 6 2.5541 4.3276 1.4364 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5728 -0.0109 33 1 6.2280 -0.2462 0.0003 34 1 8.0689 1.2516 -0.5027 35 1 7.8357 3.0162 -0.4998 36 1 7.9699 4.2324 1.6200 37 1 6.4657 3.3603 2.0002 38 1 7.5227 2.4066 4.0254 39 1 7.5801 4.1855 4.0638 40 1 9.9048 4.1474 3.2376 41 1 9.6143 4.7417 7.8930 42 1 9.5989 1.1116 3.3636 43 1 11.0845 1.9994 2.9462 44 1 9.8921 1.2231 0.9080 45 1 9.9454 3.0003 0.9905 46 1 5.6694 3.9823 0.0092 47 1 2.0815 3.7813 -0.5931 48 1 3.4887 4.8589 -0.4304 49 1 2.0341 3.4717 1.8667 50 1 3.4414 4.5493 2.0294 51 1 1.8917 5.1932 1.4366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139623675.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:33 Heat of formation + Delta-G solvation = -27.208107 kcal Electronic energy + Delta-G solvation = -27280.516296 eV Core-core repulsion = 23758.249838 eV Total energy + Delta-G solvation = -3522.266458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47776 -38.77851 -37.49938 -34.70648 -33.70072 -32.13383 -31.64537 -30.43078 -29.86272 -29.28830 -26.55735 -24.50987 -24.11859 -23.53809 -22.50106 -21.38362 -21.33138 -20.05350 -18.78150 -18.18322 -16.65500 -16.35003 -16.30942 -15.74014 -15.38241 -14.59615 -14.41279 -14.28379 -14.11814 -13.97967 -13.53485 -13.44538 -13.35406 -12.97740 -12.94459 -12.81161 -12.62841 -12.34425 -12.13605 -11.87019 -11.82907 -11.72639 -11.57980 -11.40624 -11.29638 -10.90526 -10.79470 -10.77642 -10.60415 -10.49923 -10.03089 -9.85999 -9.57363 -9.02916 -8.91726 -8.78330 -8.46757 -8.09938 -7.84039 -6.02094 -4.00007 1.32936 1.40504 3.04513 3.30713 3.40093 3.42386 3.65098 4.44487 4.46126 4.60964 4.62744 4.68706 4.78007 4.87528 4.94551 5.09405 5.15373 5.26577 5.29819 5.35917 5.38699 5.40440 5.47329 5.56309 5.56944 5.66105 5.67326 5.72836 5.78720 5.88132 5.89753 5.92796 5.96641 6.07910 6.15735 6.22762 6.25573 6.33417 6.41833 6.42606 6.49598 6.67465 6.76660 6.79213 6.89119 6.99358 7.27529 7.33537 7.46550 7.58366 7.69588 7.84462 8.59164 9.02707 9.61314 11.11533 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.003403 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.413446 B = 8224.912369 C = 9016.895329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.126 3.874 5 C -0.207 4.207 6 C -0.063 4.063 7 C -0.102 4.102 8 C 0.096 3.904 9 N -0.528 5.528 10 C 0.053 3.947 11 C -0.115 4.115 12 C 0.013 3.987 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.096 4.096 22 C 0.057 3.943 23 C -0.074 4.074 24 C -0.114 4.114 25 C -0.072 4.072 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.124 0.876 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.986 -5.905 -19.237 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.081 3.919 5 C -0.226 4.226 6 C -0.081 4.081 7 C -0.103 4.103 8 C -0.032 4.032 9 N -0.253 5.253 10 C -0.075 4.075 11 C -0.152 4.152 12 C -0.006 4.006 13 C -0.546 4.546 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.092 4.092 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.203 4.203 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.142 0.858 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.309 -6.088 -18.807 25.627 hybrid contribution -0.169 1.241 -0.487 1.344 sum -16.478 -4.847 -19.294 25.832 Atomic orbital electron populations 1.21763 0.92896 1.02726 1.03444 1.22746 0.95703 0.82333 1.01336 1.86046 1.19154 1.28806 1.88795 1.18734 0.82073 0.93554 0.97512 1.21163 0.94359 0.97684 1.09366 1.20759 0.93931 0.96810 0.96635 1.19655 0.95287 0.92960 1.02390 1.20967 0.90985 1.00620 0.90609 1.61956 1.09673 1.40778 1.12893 1.22264 0.99135 0.89532 0.96526 1.21991 0.99973 1.01004 0.92257 1.19183 0.90902 0.93911 0.96591 1.21071 1.34918 1.07716 0.90944 0.90892 1.25022 0.95656 0.97885 0.94736 1.69901 1.47037 1.34375 1.02947 0.86859 0.80352 0.82367 0.78733 1.20552 1.22633 1.19240 1.21488 0.99322 1.00438 0.92100 1.22196 0.86372 0.99236 0.99242 1.20798 0.91552 0.98733 0.98146 1.19168 0.93885 0.92317 1.06129 1.20325 0.98111 0.94592 0.97944 1.21720 1.01395 1.01225 0.95951 0.91649 0.90501 0.91516 0.92252 0.92055 0.85777 0.85761 0.90347 0.94578 0.95919 0.91514 0.91393 0.93529 0.96143 0.92784 0.91827 0.92393 0.91847 0.95638 0.85800 0.91001 0.91463 0.92483 0.92540 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.15 0.38 -0.57 16 2 C 0.05 0.45 5.46 37.15 0.20 0.65 16 3 O -0.31 -3.59 9.28 -19.44 -0.18 -3.77 16 4 C 0.13 1.59 6.66 -39.22 -0.26 1.32 16 5 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 6 C -0.06 -0.78 9.69 -39.61 -0.38 -1.17 16 7 C -0.10 -1.36 4.89 -104.60 -0.51 -1.87 16 8 C 0.10 1.29 5.12 -4.97 -0.03 1.27 16 9 N -0.53 -8.83 4.65 -236.11 -1.10 -9.92 16 10 C 0.05 0.98 5.15 -3.83 -0.02 0.96 16 11 C -0.11 -2.56 4.84 -26.65 -0.13 -2.69 16 12 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 13 C -0.51 -14.49 9.15 -34.44 -0.31 -14.80 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 16 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 17 Si 0.89 22.44 24.36 -169.99 -4.14 18.30 16 18 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 19 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 20 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 21 C -0.10 -1.93 5.32 -26.65 -0.14 -2.07 16 22 C 0.06 0.95 5.46 -3.84 -0.02 0.93 16 23 C -0.07 -0.97 7.50 -39.61 -0.30 -1.26 16 24 C -0.11 -1.46 5.15 -104.48 -0.54 -1.99 16 25 C -0.07 -0.80 5.78 -27.88 -0.16 -0.96 16 26 C -0.15 -1.64 9.90 37.16 0.37 -1.27 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 31 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 32 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 35 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 1.17 5.74 -51.93 -0.30 0.87 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.05 1.10 3.38 -51.93 -0.18 0.92 16 40 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.91 8.02 -51.92 -0.42 0.50 16 45 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.12 1.53 7.95 -52.48 -0.42 1.12 16 47 H 0.07 0.77 7.70 -51.93 -0.40 0.37 16 48 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -31.44 388.93 -10.38 -41.82 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -9.13 Total: -0.63 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.47 Total: -24.28 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.32 Total: -37.30 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.77 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.44 -10.38 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139623675.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.614 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds