Wall clock time and date at job start Tue Mar 31 2020 12:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47239 * 2 1 4 4 C 1.35908 * 117.00150 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05301 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94447 * 179.72963 * 5 4 3 7 7 C 1.38287 * 120.05267 * 0.51901 * 6 5 4 8 8 C 1.50701 * 119.94306 * 179.72523 * 7 6 5 9 9 N 1.46895 * 109.47508 * 269.72950 * 8 7 6 10 10 C 1.46850 * 110.99945 * 45.79090 * 9 8 7 11 11 C 1.53034 * 109.52564 * 185.83944 * 10 9 8 12 12 C 1.53120 * 109.27663 * 300.81923 * 11 10 9 13 13 C 1.53120 * 109.15972 * 57.65936 * 12 11 10 14 14 H 1.08997 * 109.54087 * 62.30201 * 13 12 11 15 15 C 1.50705 * 109.50402 * 182.40395 * 13 12 11 16 16 H 1.07993 * 120.00123 * 119.79559 * 15 13 12 17 17 C 1.37878 * 119.99829 * 299.79997 * 15 13 12 18 18 N 1.31518 * 120.00005 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00070 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47117 * 119.99904 * 19 17 15 22 22 H 1.48497 * 109.47218 * 239.99792 * 19 17 15 23 23 C 1.46850 * 111.00333 * 170.00158 * 9 8 7 24 24 C 1.38246 * 120.11193 * 359.46197 * 7 6 5 25 25 C 1.38165 * 120.05333 * 0.28508 * 24 7 6 26 26 C 1.50698 * 120.02478 * 179.97438 * 25 24 7 27 27 C 1.53012 * 109.47019 * 265.00097 * 26 25 24 28 28 H 1.08998 * 109.46680 * 60.00034 * 1 2 3 29 29 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47282 * 300.00128 * 1 2 3 31 31 H 1.09003 * 109.46968 * 240.00069 * 2 1 3 32 32 H 1.08999 * 109.47190 * 120.00090 * 2 1 3 33 33 H 1.08010 * 120.02892 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.97640 * 180.27549 * 6 5 4 35 35 H 1.09001 * 109.46858 * 149.73072 * 8 7 6 36 36 H 1.09002 * 109.47056 * 29.73537 * 8 7 6 37 37 H 1.09007 * 109.46080 * 65.82377 * 10 9 8 38 38 H 1.09001 * 109.45527 * 305.85274 * 10 9 8 39 39 H 1.09000 * 109.50225 * 180.88431 * 11 10 9 40 40 H 1.08997 * 109.50202 * 60.76419 * 11 10 9 41 41 H 1.08996 * 109.52935 * 297.74895 * 12 11 10 42 42 H 1.08999 * 109.57447 * 177.58775 * 12 11 10 43 43 H 0.96991 * 119.99983 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.45831 * 54.14149 * 23 9 8 45 45 H 1.08998 * 109.45719 * 294.17998 * 23 9 8 46 46 H 1.08004 * 119.97194 * 180.27595 * 24 7 6 47 47 H 1.08998 * 109.47353 * 24.99803 * 26 25 24 48 48 H 1.08997 * 109.47212 * 145.00507 * 26 25 24 49 49 H 1.08998 * 109.46818 * 300.00033 * 27 26 25 50 50 H 1.08997 * 109.46794 * 60.00154 * 27 26 25 51 51 H 1.09000 * 109.47189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0016 6 6 5.5689 0.6093 -0.0078 7 6 6.0962 1.8877 -0.0021 8 6 7.5903 2.0851 -0.0026 9 7 8.0763 2.1490 1.3821 10 6 7.4858 1.0795 2.1970 11 6 7.8984 1.2634 3.6591 12 6 9.4256 1.2248 3.7621 13 6 10.0174 2.3171 2.8669 14 1 9.6862 3.2947 3.2172 15 6 11.5220 2.2480 2.9165 16 1 12.0845 2.0690 2.0122 17 6 12.1805 2.4133 4.1166 18 7 11.4955 2.6308 5.2180 19 14 14.0454 2.3270 4.1783 20 1 14.5746 2.0735 2.8141 21 1 14.5840 3.6142 4.6864 22 1 14.4603 1.2252 5.0834 23 6 9.5434 2.1027 1.4277 24 6 5.2552 2.9849 -0.0014 25 6 3.8851 2.8065 -0.0005 26 6 2.9689 4.0030 0.0008 27 6 2.5601 4.3307 1.4384 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7885 -0.5729 -0.0024 34 1 6.2280 -0.2462 -0.0131 35 1 7.8337 3.0151 -0.5164 36 1 8.0668 1.2505 -0.5169 37 1 7.8393 0.1126 1.8387 38 1 6.3994 1.1208 2.1182 39 1 7.4728 0.4605 4.2611 40 1 7.5333 2.2241 4.0222 41 1 9.7883 0.2502 3.4357 42 1 9.7265 1.3981 4.7953 43 1 11.9587 2.7474 6.0622 44 1 9.9513 2.8870 0.7901 45 1 9.8872 1.1311 1.0730 46 1 5.6695 3.9823 -0.0015 47 1 3.4872 4.8580 -0.4334 48 1 2.0792 3.7800 -0.5880 49 1 2.0419 3.4758 1.8726 50 1 3.4498 4.5538 2.0272 51 1 1.8971 5.1959 1.4394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139624164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:10 Heat of formation + Delta-G solvation = -33.662604 kcal Electronic energy + Delta-G solvation = -27046.840440 eV Core-core repulsion = 23524.294095 eV Total energy + Delta-G solvation = -3522.546346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47047 -38.64790 -37.31227 -34.61104 -33.45600 -32.15352 -31.68043 -30.13911 -29.83104 -28.91738 -25.56872 -24.92161 -24.27394 -23.65257 -22.03258 -21.63230 -21.01838 -19.94913 -18.55336 -18.13834 -16.37862 -16.30403 -16.28680 -15.36197 -15.07412 -14.56553 -14.47348 -14.14294 -13.99370 -13.73524 -13.43301 -13.42566 -13.25664 -13.02247 -12.80443 -12.61563 -12.48414 -12.19276 -12.03108 -11.79410 -11.68224 -11.60179 -11.43094 -11.14719 -10.95654 -10.93716 -10.80611 -10.61190 -10.55743 -10.53835 -10.01933 -9.79181 -9.42705 -9.02584 -8.76514 -8.65398 -8.27999 -8.03048 -7.54327 -5.94721 -4.00760 1.36418 1.44402 3.06484 3.31347 3.39382 3.42986 3.71324 4.44434 4.62192 4.63022 4.71173 4.74926 4.80739 4.93275 4.97006 5.11202 5.21205 5.32680 5.35379 5.41124 5.42038 5.46614 5.47493 5.68940 5.70045 5.76604 5.79505 5.91174 5.91821 5.92720 5.96021 6.14289 6.15607 6.26783 6.32141 6.36149 6.43688 6.47114 6.56378 6.74277 6.79600 6.80486 6.81914 7.01780 7.26724 7.35970 7.44332 7.72935 7.78801 7.86751 8.12481 8.21354 8.51576 9.03712 9.63377 11.11315 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.002623 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.921660 B =10673.851933 C =10838.798423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.124 3.876 5 C -0.207 4.207 6 C -0.078 4.078 7 C -0.103 4.103 8 C 0.094 3.906 9 N -0.532 5.532 10 C 0.061 3.939 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.067 3.933 24 C -0.061 4.061 25 C -0.115 4.115 26 C -0.072 4.072 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.130 0.870 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 -3.602 -11.078 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.079 3.921 5 C -0.226 4.226 6 C -0.097 4.097 7 C -0.103 4.103 8 C -0.033 4.033 9 N -0.256 5.256 10 C -0.067 4.067 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.059 4.059 24 C -0.079 4.079 25 C -0.116 4.116 26 C -0.109 4.109 27 C -0.202 4.202 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.148 0.852 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.998 -2.985 -10.691 23.751 hybrid contribution 1.459 -1.293 -0.200 1.959 sum -19.540 -4.278 -10.892 22.775 Atomic orbital electron populations 1.21761 0.92908 1.02700 1.03434 1.22735 0.95685 0.82407 1.01292 1.86044 1.19188 1.28704 1.88870 1.18726 0.81995 0.93570 0.97804 1.21111 0.94203 0.97696 1.09551 1.20852 0.94170 0.96875 0.97801 1.19752 0.95795 0.92792 1.01993 1.21035 0.89794 1.00902 0.91575 1.62161 1.09208 1.46560 1.07687 1.22122 0.98308 0.91470 0.94763 1.21674 0.99541 1.00465 0.93823 1.21647 0.90424 0.98304 1.04444 1.18661 0.94190 0.95567 0.87942 0.94752 1.21192 0.91394 1.48821 0.93790 0.92815 1.24940 0.98005 0.95178 0.95780 1.69906 1.34812 1.49298 0.98690 0.86581 0.86135 0.77556 0.77970 1.19877 1.21054 1.21136 1.22332 0.83713 0.98387 1.01507 1.20781 0.91082 0.99024 0.97031 1.19219 0.94033 0.92216 1.06095 1.20318 0.98071 0.94663 0.97884 1.21712 1.01362 1.01071 0.96032 0.91635 0.90539 0.91531 0.92286 0.92144 0.85877 0.86212 0.90367 0.94779 0.96321 0.91778 0.93771 0.92184 0.95283 0.89193 0.93145 0.92251 0.96339 0.85186 0.91313 0.91118 0.92657 0.92419 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.55 9.27 -19.45 -0.18 -3.73 16 4 C 0.12 1.55 6.66 -39.22 -0.26 1.29 16 5 C -0.21 -2.49 9.04 -39.44 -0.36 -2.85 16 6 C -0.08 -1.03 7.80 -39.61 -0.31 -1.33 16 7 C -0.10 -1.45 4.11 -104.60 -0.43 -1.88 16 8 C 0.09 1.46 5.43 -4.98 -0.03 1.43 16 9 N -0.53 -10.01 4.80 -236.11 -1.13 -11.14 16 10 C 0.06 1.12 4.58 -3.83 -0.02 1.11 16 11 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 12 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 13 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 14 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.57 11.36 55.43 0.63 -24.94 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.07 1.45 4.65 -3.83 -0.02 1.43 16 24 C -0.06 -0.81 9.33 -39.61 -0.37 -1.18 16 25 C -0.11 -1.46 5.15 -104.48 -0.54 -1.99 16 26 C -0.07 -0.78 5.79 -27.88 -0.16 -0.94 16 27 C -0.14 -1.52 9.90 37.16 0.37 -1.15 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 32 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 33 H 0.12 1.22 6.30 -52.48 -0.33 0.88 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.03 0.52 8.02 -51.93 -0.42 0.10 16 37 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.06 1.11 5.65 -51.93 -0.29 0.81 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 47 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 48 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -29.35 394.99 -11.46 -40.80 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -9.28 Total: -0.36 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.43 Total: -22.94 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.50 Total: -36.08 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.18 Total: -3.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.35 -11.46 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139624164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.139 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds