Wall clock time and date at job start Tue Mar 31 2020 12:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47239 * 2 1 4 4 C 1.35908 * 117.00150 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05301 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94447 * 179.72963 * 5 4 3 7 7 C 1.38287 * 120.05267 * 0.51901 * 6 5 4 8 8 C 1.50701 * 119.94306 * 179.72523 * 7 6 5 9 9 N 1.46895 * 109.47508 * 269.72950 * 8 7 6 10 10 C 1.46850 * 110.99945 * 45.79090 * 9 8 7 11 11 C 1.53034 * 109.52564 * 185.83944 * 10 9 8 12 12 C 1.53120 * 109.27663 * 300.81923 * 11 10 9 13 13 C 1.53120 * 109.15972 * 57.65936 * 12 11 10 14 14 H 1.08997 * 109.54087 * 62.30201 * 13 12 11 15 15 C 1.50705 * 109.50402 * 182.40395 * 13 12 11 16 16 H 1.07993 * 120.00123 * 119.79559 * 15 13 12 17 17 C 1.37878 * 119.99829 * 299.79997 * 15 13 12 18 18 N 1.31518 * 120.00005 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00070 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47117 * 119.99904 * 19 17 15 22 22 H 1.48497 * 109.47218 * 239.99792 * 19 17 15 23 23 C 1.46850 * 111.00333 * 170.00158 * 9 8 7 24 24 C 1.38246 * 120.11193 * 359.46197 * 7 6 5 25 25 C 1.38165 * 120.05333 * 0.28508 * 24 7 6 26 26 C 1.50698 * 120.02478 * 179.97438 * 25 24 7 27 27 C 1.53012 * 109.47019 * 265.00097 * 26 25 24 28 28 H 1.08998 * 109.46680 * 60.00034 * 1 2 3 29 29 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47282 * 300.00128 * 1 2 3 31 31 H 1.09003 * 109.46968 * 240.00069 * 2 1 3 32 32 H 1.08999 * 109.47190 * 120.00090 * 2 1 3 33 33 H 1.08010 * 120.02892 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.97640 * 180.27549 * 6 5 4 35 35 H 1.09001 * 109.46858 * 149.73072 * 8 7 6 36 36 H 1.09002 * 109.47056 * 29.73537 * 8 7 6 37 37 H 1.09007 * 109.46080 * 65.82377 * 10 9 8 38 38 H 1.09001 * 109.45527 * 305.85274 * 10 9 8 39 39 H 1.09000 * 109.50225 * 180.88431 * 11 10 9 40 40 H 1.08997 * 109.50202 * 60.76419 * 11 10 9 41 41 H 1.08996 * 109.52935 * 297.74895 * 12 11 10 42 42 H 1.08999 * 109.57447 * 177.58775 * 12 11 10 43 43 H 0.96991 * 119.99983 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.45831 * 54.14149 * 23 9 8 45 45 H 1.08998 * 109.45719 * 294.17998 * 23 9 8 46 46 H 1.08004 * 119.97194 * 180.27595 * 24 7 6 47 47 H 1.08998 * 109.47353 * 24.99803 * 26 25 24 48 48 H 1.08997 * 109.47212 * 145.00507 * 26 25 24 49 49 H 1.08998 * 109.46818 * 300.00033 * 27 26 25 50 50 H 1.08997 * 109.46794 * 60.00154 * 27 26 25 51 51 H 1.09000 * 109.47189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0016 6 6 5.5689 0.6093 -0.0078 7 6 6.0962 1.8877 -0.0021 8 6 7.5903 2.0851 -0.0026 9 7 8.0763 2.1490 1.3821 10 6 7.4858 1.0795 2.1970 11 6 7.8984 1.2634 3.6591 12 6 9.4256 1.2248 3.7621 13 6 10.0174 2.3171 2.8669 14 1 9.6862 3.2947 3.2172 15 6 11.5220 2.2480 2.9165 16 1 12.0845 2.0690 2.0122 17 6 12.1805 2.4133 4.1166 18 7 11.4955 2.6308 5.2180 19 14 14.0454 2.3270 4.1783 20 1 14.5746 2.0735 2.8141 21 1 14.5840 3.6142 4.6864 22 1 14.4603 1.2252 5.0834 23 6 9.5434 2.1027 1.4277 24 6 5.2552 2.9849 -0.0014 25 6 3.8851 2.8065 -0.0005 26 6 2.9689 4.0030 0.0008 27 6 2.5601 4.3307 1.4384 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7885 -0.5729 -0.0024 34 1 6.2280 -0.2462 -0.0131 35 1 7.8337 3.0151 -0.5164 36 1 8.0668 1.2505 -0.5169 37 1 7.8393 0.1126 1.8387 38 1 6.3994 1.1208 2.1182 39 1 7.4728 0.4605 4.2611 40 1 7.5333 2.2241 4.0222 41 1 9.7883 0.2502 3.4357 42 1 9.7265 1.3981 4.7953 43 1 11.9587 2.7474 6.0622 44 1 9.9513 2.8870 0.7901 45 1 9.8872 1.1311 1.0730 46 1 5.6695 3.9823 -0.0015 47 1 3.4872 4.8580 -0.4334 48 1 2.0792 3.7800 -0.5880 49 1 2.0419 3.4758 1.8726 50 1 3.4498 4.5538 2.0272 51 1 1.8971 5.1959 1.4394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139624164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:09 Heat of formation + Delta-G solvation = -47.967140 kcal Electronic energy + Delta-G solvation = -27047.460732 eV Core-core repulsion = 23524.294095 eV Total energy + Delta-G solvation = -3523.166637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41230 -39.98189 -38.47362 -35.93485 -34.88372 -33.63283 -32.54704 -31.72174 -31.08718 -30.02471 -26.94464 -26.78511 -25.13942 -24.49829 -23.54764 -23.15698 -22.05360 -21.05885 -20.32612 -19.00095 -18.41957 -17.22287 -17.03428 -16.89321 -16.41030 -16.23950 -15.50463 -15.40859 -15.06451 -14.92540 -14.69731 -14.62325 -14.44139 -14.24525 -14.14559 -13.87726 -13.39889 -13.36679 -13.31159 -12.96579 -12.87376 -12.81072 -12.69717 -12.59023 -12.42239 -12.35921 -12.12261 -11.85597 -11.74832 -11.67910 -11.51399 -11.45741 -11.34975 -10.86250 -10.65035 -10.37513 -9.74376 -9.20098 -8.85216 -8.07318 -6.21470 0.39929 0.45010 1.40528 1.42142 1.53566 2.30555 2.43098 2.69571 3.19664 3.30966 3.76817 3.81140 3.89770 4.08066 4.13060 4.21300 4.23467 4.29572 4.32009 4.39236 4.40559 4.43928 4.50532 4.56854 4.61204 4.70358 4.73020 4.76628 4.83981 4.89318 4.94488 4.96632 4.98177 5.04491 5.09818 5.10490 5.18612 5.19046 5.24474 5.36668 5.39232 5.43358 5.51451 5.54476 5.64329 5.73808 5.87246 5.97452 6.13391 6.22021 6.35474 6.47005 6.50910 6.91630 7.46419 8.97690 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.002623 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.921660 B =10673.851933 C =10838.798423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.323 6.323 4 C 0.121 3.879 5 C -0.207 4.207 6 C -0.083 4.083 7 C -0.118 4.118 8 C 0.098 3.902 9 N -0.542 5.542 10 C 0.071 3.929 11 C -0.111 4.111 12 C -0.102 4.102 13 C 0.053 3.947 14 H -0.004 1.004 15 C -0.534 4.534 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.081 3.919 24 C -0.068 4.068 25 C -0.125 4.125 26 C -0.070 4.070 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.132 0.868 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.046 0.954 50 H 0.045 0.955 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.949 -4.615 -12.254 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.238 6.238 4 C 0.076 3.924 5 C -0.225 4.225 6 C -0.102 4.102 7 C -0.118 4.118 8 C -0.028 4.028 9 N -0.267 5.267 10 C -0.057 4.057 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.014 0.986 15 C -0.572 4.572 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.046 4.046 24 C -0.087 4.087 25 C -0.126 4.126 26 C -0.107 4.107 27 C -0.198 4.198 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.150 0.850 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.233 -4.003 -11.883 25.525 hybrid contribution 1.729 -0.978 0.159 1.993 sum -20.504 -4.981 -11.724 24.139 Atomic orbital electron populations 1.21783 0.91454 1.04029 1.03171 1.23026 0.96888 0.81117 1.01987 1.86049 1.18431 1.30727 1.88564 1.18892 0.82749 0.93681 0.97122 1.21338 0.93749 0.98712 1.08717 1.20971 0.94832 0.96641 0.97719 1.19653 0.94779 0.93590 1.03802 1.21027 0.90943 1.01509 0.89354 1.62067 1.07364 1.47088 1.10138 1.22025 0.99130 0.91510 0.92986 1.21594 0.96646 1.00616 0.96054 1.21451 0.93189 0.97350 1.02064 1.18580 0.93458 0.93899 0.90622 0.98596 1.21551 0.92859 1.48914 0.93905 0.92924 1.25739 1.02615 0.94826 0.95443 1.70051 1.36550 1.49858 0.99141 0.85554 0.80579 0.77589 0.78209 1.19086 1.20664 1.20651 1.22002 0.85716 0.98199 0.98685 1.20868 0.91525 0.99057 0.97229 1.19445 0.94052 0.93182 1.05884 1.20340 0.97958 0.94394 0.98044 1.21672 1.01047 1.01411 0.95644 0.91700 0.88413 0.91985 0.91260 0.91687 0.83704 0.85470 0.89787 0.94164 0.95743 0.90094 0.91619 0.93492 0.95837 0.92441 0.93100 0.92218 0.96497 0.85003 0.90361 0.90767 0.93483 0.93581 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.62 5.46 71.98 0.39 1.02 16 3 O -0.32 -6.71 9.27 -92.52 -0.86 -7.57 16 4 C 0.12 2.81 6.66 22.50 0.15 2.96 16 5 C -0.21 -4.50 9.04 22.36 0.20 -4.30 16 6 C -0.08 -2.00 7.80 22.25 0.17 -1.83 16 7 C -0.12 -3.15 4.11 -19.85 -0.08 -3.23 16 8 C 0.10 2.93 5.43 85.56 0.46 3.40 16 9 N -0.54 -20.12 4.80 -900.93 -4.32 -24.44 16 10 C 0.07 2.53 4.58 86.32 0.40 2.92 16 11 C -0.11 -4.52 6.09 30.65 0.19 -4.33 16 12 C -0.10 -5.06 5.03 30.67 0.15 -4.90 16 13 C 0.05 2.77 2.26 -11.49 -0.03 2.75 16 14 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 15 C -0.53 -30.05 8.56 25.60 0.22 -29.83 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.70 5.30 84.65 0.45 1.14 16 18 N -0.92 -54.13 11.36 21.45 0.24 -53.89 16 19 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.08 3.52 4.65 86.33 0.40 3.92 16 24 C -0.07 -1.75 9.33 22.25 0.21 -1.55 16 25 C -0.12 -3.00 5.15 -19.77 -0.10 -3.10 16 26 C -0.07 -1.41 5.79 29.85 0.17 -1.24 16 27 C -0.14 -2.80 9.90 71.99 0.71 -2.08 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 32 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 33 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 34 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 36 H 0.04 1.16 8.02 -2.39 -0.02 1.14 16 37 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.08 2.65 5.65 -2.39 -0.01 2.63 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 3.20 6.16 -2.39 -0.01 3.19 16 43 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 48 H 0.07 1.44 7.69 -2.39 -0.02 1.42 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.67 394.99 2.77 -60.90 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.87 Total: 17.75 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.81 Total: -39.03 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -4.08 Total: -78.33 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.86 Total: -7.57 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.67 2.77 -60.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139624164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.937 kcal (2) G-P(sol) polarization free energy of solvation -63.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds