Wall clock time and date at job start Tue Mar 31 2020 12:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47345 * 2 1 4 4 C 1.35897 * 116.99928 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05863 * 359.97438 * 4 3 2 6 6 C 1.38122 * 119.94862 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05358 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.94678 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47387 * 269.97808 * 8 7 6 10 10 C 1.46849 * 110.99583 * 294.21125 * 9 8 7 11 11 C 1.53037 * 109.52020 * 174.15913 * 10 9 8 12 12 C 1.53119 * 109.28007 * 59.17759 * 11 10 9 13 13 C 1.53123 * 109.16073 * 302.34333 * 12 11 10 14 14 H 1.08995 * 109.50373 * 297.71660 * 13 12 11 15 15 C 1.50695 * 109.50378 * 177.59661 * 13 12 11 16 16 H 1.08003 * 120.00049 * 240.19587 * 15 13 12 17 17 C 1.37875 * 120.00120 * 60.20001 * 15 13 12 18 18 N 1.31514 * 119.99855 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99929 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47353 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47246 * 119.99899 * 19 17 15 22 22 H 1.48501 * 109.46866 * 239.99607 * 19 17 15 23 23 C 1.46839 * 111.00529 * 169.99771 * 9 8 7 24 24 C 1.38251 * 120.11088 * 359.97438 * 7 6 5 25 25 C 1.38163 * 120.05527 * 0.28334 * 24 7 6 26 26 C 1.50693 * 120.02868 * 179.74173 * 25 24 7 27 27 C 1.53002 * 109.47274 * 264.99602 * 26 25 24 28 28 H 1.09001 * 109.47244 * 59.99789 * 1 2 3 29 29 H 1.08999 * 109.47656 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46943 * 300.00100 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99622 * 2 1 3 32 32 H 1.09009 * 109.47097 * 119.99932 * 2 1 3 33 33 H 1.07998 * 120.02575 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.97839 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.47065 * 29.97548 * 8 7 6 36 36 H 1.09000 * 109.47244 * 149.97665 * 8 7 6 37 37 H 1.09002 * 109.46052 * 294.16697 * 10 9 8 38 38 H 1.08994 * 109.46684 * 54.14140 * 10 9 8 39 39 H 1.08997 * 109.50562 * 299.23118 * 11 10 9 40 40 H 1.09001 * 109.53686 * 179.13623 * 11 10 9 41 41 H 1.09006 * 109.52445 * 182.44138 * 12 11 10 42 42 H 1.08993 * 109.57675 * 62.28192 * 12 11 10 43 43 H 0.97007 * 119.99886 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.46247 * 305.85730 * 23 9 8 45 45 H 1.09003 * 109.46514 * 65.81909 * 23 9 8 46 46 H 1.08002 * 119.96904 * 179.97438 * 24 7 6 47 47 H 1.09004 * 109.47408 * 24.99385 * 26 25 24 48 48 H 1.09000 * 109.47853 * 144.99650 * 26 25 24 49 49 H 1.08995 * 109.47421 * 179.97438 * 27 26 25 50 50 H 1.08995 * 109.46947 * 300.00194 * 27 26 25 51 51 H 1.09010 * 109.47025 * 59.99655 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1999 0.4257 -0.0005 6 6 5.5689 0.6092 -0.0005 7 6 6.0963 1.8876 -0.0011 8 6 7.5902 2.0851 -0.0017 9 7 8.0762 2.1502 1.3831 10 6 7.5609 3.3438 2.0659 11 6 7.9659 3.3037 3.5412 12 6 9.4927 3.2524 3.6451 13 6 10.0073 2.0268 2.8850 14 1 9.6127 1.1211 3.3453 15 6 11.5133 2.0012 2.9324 16 1 12.0831 2.0363 2.0156 17 6 12.1638 1.9328 4.1462 18 7 11.4699 1.8905 5.2626 19 14 14.0306 1.9018 4.2049 20 1 14.5704 1.9596 2.8227 21 1 14.5211 3.0712 4.9777 22 1 14.4844 0.6492 4.8611 23 6 9.5431 2.1039 1.4288 24 6 5.2552 2.9848 -0.0022 25 6 3.8851 2.8065 0.0032 26 6 2.9689 4.0029 0.0079 27 6 2.5647 4.3302 1.4468 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7885 -0.5729 -0.0005 34 1 6.2280 -0.2463 -0.0009 35 1 8.0669 1.2499 -0.5151 36 1 7.8337 3.0146 -0.5163 37 1 7.9766 4.2369 1.5994 38 1 6.4740 3.3659 1.9882 39 1 7.5391 2.4181 4.0119 40 1 7.5967 4.1971 4.0449 41 1 9.7843 3.1801 4.6930 42 1 9.9189 4.1563 3.2100 43 1 11.9276 1.8428 6.1166 44 1 9.8958 1.2255 0.8882 45 1 9.9495 3.0028 0.9652 46 1 5.6695 3.9822 -0.0022 47 1 3.4857 4.8581 -0.4277 48 1 2.0773 3.7802 -0.5782 49 1 1.9024 5.1958 1.4503 50 1 2.0480 3.4751 1.8824 51 1 3.4564 4.5530 2.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139624165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:13 Heat of formation + Delta-G solvation = -35.503330 kcal Electronic energy + Delta-G solvation = -27005.038894 eV Core-core repulsion = 23482.412729 eV Total energy + Delta-G solvation = -3522.626165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40870 -38.56665 -37.33109 -34.56549 -33.53433 -32.12005 -31.65738 -30.26646 -29.57598 -29.07064 -25.56369 -24.90367 -24.19365 -23.67562 -22.01782 -21.43657 -21.25719 -19.92058 -18.54866 -18.12300 -16.37504 -16.29111 -16.25891 -15.33875 -15.04523 -14.54827 -14.45449 -14.14046 -14.00498 -13.81572 -13.50124 -13.39175 -13.20841 -12.86793 -12.81559 -12.64015 -12.49974 -12.22313 -12.00155 -11.76710 -11.71893 -11.62033 -11.29680 -11.19947 -10.94744 -10.93070 -10.78213 -10.62057 -10.60603 -10.49454 -10.04471 -9.80066 -9.43487 -9.01602 -8.75125 -8.65565 -8.27623 -7.99091 -7.57769 -5.94921 -4.00976 1.39770 1.48653 3.08863 3.31175 3.39226 3.42822 3.74459 4.44359 4.65231 4.65338 4.72646 4.73677 4.85236 4.96153 5.00758 5.13996 5.20092 5.34671 5.35170 5.39494 5.44729 5.47809 5.49556 5.68638 5.70807 5.73645 5.79029 5.88492 5.89638 5.93702 5.96503 6.12324 6.16231 6.24438 6.31968 6.41097 6.44242 6.48647 6.55760 6.76176 6.79647 6.80941 6.83752 7.01331 7.26792 7.39114 7.44276 7.72518 7.78595 7.86626 8.12234 8.21221 8.51401 9.03487 9.63184 11.11062 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002638 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.235160 B =10610.135766 C =10918.795611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.123 3.877 5 C -0.207 4.207 6 C -0.063 4.063 7 C -0.098 4.098 8 C 0.094 3.906 9 N -0.532 5.532 10 C 0.061 3.939 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.068 3.932 24 C -0.075 4.075 25 C -0.116 4.116 26 C -0.072 4.072 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.020 0.980 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 -0.228 -11.299 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.078 3.922 5 C -0.225 4.225 6 C -0.082 4.082 7 C -0.098 4.098 8 C -0.033 4.033 9 N -0.257 5.257 10 C -0.067 4.067 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.059 4.059 24 C -0.093 4.093 25 C -0.116 4.116 26 C -0.109 4.109 27 C -0.201 4.201 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.763 -0.506 -10.858 23.436 hybrid contribution 1.492 0.365 -0.273 1.560 sum -19.271 -0.141 -11.131 22.255 Atomic orbital electron populations 1.21762 0.92949 1.02697 1.03388 1.22736 0.95635 0.82397 1.01351 1.86033 1.19224 1.28737 1.88904 1.18717 0.81993 0.93569 0.97881 1.21165 0.94373 0.97651 1.09349 1.20805 0.93902 0.97001 0.96501 1.19739 0.95555 0.92869 1.01660 1.20976 0.90552 1.00575 0.91240 1.62022 1.11330 1.39747 1.12585 1.22095 0.98615 0.90139 0.95859 1.21661 0.99689 1.00168 0.93914 1.21648 0.90423 0.98361 1.04402 1.18660 0.94456 0.94972 0.88276 0.94793 1.21189 0.91316 1.50321 0.92366 0.92815 1.24939 0.97989 0.95200 0.95774 1.69910 1.34759 1.50674 0.97357 0.86583 0.86152 0.77521 0.77991 1.19875 1.21122 1.21070 1.22326 0.83555 0.98656 1.01358 1.20789 0.91464 0.98704 0.98388 1.19148 0.93875 0.92229 1.06390 1.20312 0.98144 0.94645 0.97838 1.21709 1.01296 1.01122 0.96023 0.91663 0.90531 0.91568 0.92255 0.92093 0.85845 0.85693 0.90416 0.94814 0.96152 0.91949 0.92216 0.93683 0.89200 0.95229 0.93148 0.92297 0.96329 0.85840 0.91492 0.91061 0.92789 0.92552 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.05 0.45 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.61 9.27 -19.42 -0.18 -3.79 16 4 C 0.12 1.57 6.66 -39.21 -0.26 1.31 16 5 C -0.21 -2.55 9.04 -39.43 -0.36 -2.91 16 6 C -0.06 -0.86 9.69 -39.60 -0.38 -1.24 16 7 C -0.10 -1.39 4.89 -104.60 -0.51 -1.90 16 8 C 0.09 1.46 5.12 -4.98 -0.03 1.43 16 9 N -0.53 -9.99 4.65 -236.12 -1.10 -11.09 16 10 C 0.06 1.11 5.15 -3.83 -0.02 1.09 16 11 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 12 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16 14 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.55 11.36 55.43 0.63 -24.92 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 24 C -0.07 -1.00 7.50 -39.60 -0.30 -1.29 16 25 C -0.12 -1.47 5.15 -104.48 -0.54 -2.01 16 26 C -0.07 -0.77 5.79 -27.88 -0.16 -0.94 16 27 C -0.14 -1.50 9.89 37.16 0.37 -1.13 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.06 0.49 7.66 -51.92 -0.40 0.09 16 33 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.08 1.14 7.93 -51.92 -0.41 0.73 16 36 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.05 5.75 -51.93 -0.30 0.75 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 47 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 48 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -29.39 395.74 -11.48 -40.87 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -9.26 Total: -0.37 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -2.51 Total: -23.00 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.47 Total: -36.00 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.18 Total: -3.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.39 -11.48 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139624165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds