Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47345 * 2 1 4 4 C 1.35897 * 116.99928 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05863 * 359.97438 * 4 3 2 6 6 C 1.38122 * 119.94862 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05358 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.94678 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47387 * 269.97808 * 8 7 6 10 10 C 1.46849 * 110.99583 * 294.21125 * 9 8 7 11 11 C 1.53037 * 109.52020 * 174.15913 * 10 9 8 12 12 C 1.53119 * 109.28007 * 59.17759 * 11 10 9 13 13 C 1.53123 * 109.16073 * 302.34333 * 12 11 10 14 14 H 1.08995 * 109.50373 * 297.71660 * 13 12 11 15 15 C 1.50695 * 109.50378 * 177.59661 * 13 12 11 16 16 H 1.08003 * 120.00049 * 240.19587 * 15 13 12 17 17 C 1.37875 * 120.00120 * 60.20001 * 15 13 12 18 18 N 1.31514 * 119.99855 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99929 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47353 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47246 * 119.99899 * 19 17 15 22 22 H 1.48501 * 109.46866 * 239.99607 * 19 17 15 23 23 C 1.46839 * 111.00529 * 169.99771 * 9 8 7 24 24 C 1.38251 * 120.11088 * 359.97438 * 7 6 5 25 25 C 1.38163 * 120.05527 * 0.28334 * 24 7 6 26 26 C 1.50693 * 120.02868 * 179.74173 * 25 24 7 27 27 C 1.53002 * 109.47274 * 264.99602 * 26 25 24 28 28 H 1.09001 * 109.47244 * 59.99789 * 1 2 3 29 29 H 1.08999 * 109.47656 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46943 * 300.00100 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99622 * 2 1 3 32 32 H 1.09009 * 109.47097 * 119.99932 * 2 1 3 33 33 H 1.07998 * 120.02575 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.97839 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.47065 * 29.97548 * 8 7 6 36 36 H 1.09000 * 109.47244 * 149.97665 * 8 7 6 37 37 H 1.09002 * 109.46052 * 294.16697 * 10 9 8 38 38 H 1.08994 * 109.46684 * 54.14140 * 10 9 8 39 39 H 1.08997 * 109.50562 * 299.23118 * 11 10 9 40 40 H 1.09001 * 109.53686 * 179.13623 * 11 10 9 41 41 H 1.09006 * 109.52445 * 182.44138 * 12 11 10 42 42 H 1.08993 * 109.57675 * 62.28192 * 12 11 10 43 43 H 0.97007 * 119.99886 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.46247 * 305.85730 * 23 9 8 45 45 H 1.09003 * 109.46514 * 65.81909 * 23 9 8 46 46 H 1.08002 * 119.96904 * 179.97438 * 24 7 6 47 47 H 1.09004 * 109.47408 * 24.99385 * 26 25 24 48 48 H 1.09000 * 109.47853 * 144.99650 * 26 25 24 49 49 H 1.08995 * 109.47421 * 179.97438 * 27 26 25 50 50 H 1.08995 * 109.46947 * 300.00194 * 27 26 25 51 51 H 1.09010 * 109.47025 * 59.99655 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1999 0.4257 -0.0005 6 6 5.5689 0.6092 -0.0005 7 6 6.0963 1.8876 -0.0011 8 6 7.5902 2.0851 -0.0017 9 7 8.0762 2.1502 1.3831 10 6 7.5609 3.3438 2.0659 11 6 7.9659 3.3037 3.5412 12 6 9.4927 3.2524 3.6451 13 6 10.0073 2.0268 2.8850 14 1 9.6127 1.1211 3.3453 15 6 11.5133 2.0012 2.9324 16 1 12.0831 2.0363 2.0156 17 6 12.1638 1.9328 4.1462 18 7 11.4699 1.8905 5.2626 19 14 14.0306 1.9018 4.2049 20 1 14.5704 1.9596 2.8227 21 1 14.5211 3.0712 4.9777 22 1 14.4844 0.6492 4.8611 23 6 9.5431 2.1039 1.4288 24 6 5.2552 2.9848 -0.0022 25 6 3.8851 2.8065 0.0032 26 6 2.9689 4.0029 0.0079 27 6 2.5647 4.3302 1.4468 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7885 -0.5729 -0.0005 34 1 6.2280 -0.2463 -0.0009 35 1 8.0669 1.2499 -0.5151 36 1 7.8337 3.0146 -0.5163 37 1 7.9766 4.2369 1.5994 38 1 6.4740 3.3659 1.9882 39 1 7.5391 2.4181 4.0119 40 1 7.5967 4.1971 4.0449 41 1 9.7843 3.1801 4.6930 42 1 9.9189 4.1563 3.2100 43 1 11.9276 1.8428 6.1166 44 1 9.8958 1.2255 0.8882 45 1 9.9495 3.0028 0.9652 46 1 5.6695 3.9822 -0.0022 47 1 3.4857 4.8581 -0.4277 48 1 2.0773 3.7802 -0.5782 49 1 1.9024 5.1958 1.4503 50 1 2.0480 3.4751 1.8824 51 1 3.4564 4.5530 2.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139624165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = -49.684651 kcal Electronic energy + Delta-G solvation = -27005.653842 eV Core-core repulsion = 23482.412729 eV Total energy + Delta-G solvation = -3523.241114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35061 -39.93094 -38.48303 -35.86704 -34.97069 -33.59818 -32.55179 -31.77969 -30.94927 -30.11731 -26.92692 -26.77404 -25.06041 -24.51700 -23.55184 -23.09545 -22.14671 -21.03008 -20.32762 -18.99580 -18.41638 -17.21773 -17.01987 -16.86414 -16.39286 -16.20746 -15.59397 -15.35415 -15.09375 -14.92078 -14.75908 -14.52167 -14.39770 -14.21515 -14.15628 -13.93930 -13.40669 -13.37753 -13.30258 -12.89670 -12.86891 -12.80607 -12.60345 -12.49206 -12.45174 -12.38108 -12.19520 -11.84308 -11.74089 -11.70192 -11.52715 -11.43128 -11.36922 -10.85043 -10.65134 -10.37592 -9.72547 -9.15656 -8.88827 -8.07167 -6.21320 0.42040 0.47542 1.40505 1.42152 1.53545 2.31154 2.43118 2.70695 3.19808 3.32852 3.79583 3.85409 3.90456 4.07947 4.11989 4.20672 4.25334 4.31377 4.32602 4.39254 4.40771 4.46267 4.51922 4.56924 4.61869 4.69367 4.72626 4.77125 4.82207 4.90457 4.94769 4.96570 4.98999 5.04355 5.10007 5.11330 5.19381 5.19554 5.24154 5.37868 5.40795 5.45287 5.52802 5.55642 5.64529 5.75627 5.88394 5.98048 6.13666 6.22609 6.36463 6.47506 6.51820 6.91891 7.46582 8.97728 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002638 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.235160 B =10610.135766 C =10918.795611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.323 6.323 4 C 0.119 3.881 5 C -0.209 4.209 6 C -0.074 4.074 7 C -0.113 4.113 8 C 0.098 3.902 9 N -0.543 5.543 10 C 0.068 3.932 11 C -0.110 4.110 12 C -0.103 4.103 13 C 0.053 3.947 14 H -0.005 1.005 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.082 3.918 24 C -0.079 4.079 25 C -0.124 4.124 26 C -0.070 4.070 27 C -0.141 4.141 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.132 0.868 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.045 0.955 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 0.118 -12.546 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.238 6.238 4 C 0.073 3.927 5 C -0.228 4.228 6 C -0.093 4.093 7 C -0.113 4.113 8 C -0.028 4.028 9 N -0.267 5.267 10 C -0.059 4.059 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.013 0.987 15 C -0.572 4.572 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.046 4.046 24 C -0.097 4.097 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.198 4.198 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.150 0.850 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.951 -0.165 -12.121 25.076 hybrid contribution 1.751 0.202 0.114 1.766 sum -20.201 0.037 -12.007 23.500 Atomic orbital electron populations 1.21781 0.91381 1.04031 1.03187 1.23018 0.96916 0.81156 1.01921 1.86037 1.18461 1.30666 1.88616 1.18903 0.82706 0.93754 0.97288 1.21370 0.93942 0.98683 1.08760 1.20946 0.94602 0.96977 0.96757 1.19668 0.94738 0.93588 1.03328 1.20976 0.91522 1.01250 0.89100 1.61941 1.09415 1.40266 1.15113 1.22028 0.99693 0.90164 0.94053 1.21573 0.96637 1.00576 0.95990 1.21455 0.93257 0.97426 1.01961 1.18579 0.93542 0.93664 0.90776 0.98680 1.21551 0.92781 1.50378 0.92481 0.92917 1.25737 1.02591 0.94854 0.95446 1.70055 1.36501 1.51244 0.97806 0.85558 0.80614 0.77548 0.78231 1.19075 1.20661 1.20687 1.21994 0.85565 0.98584 0.98418 1.20892 0.91709 0.98818 0.98315 1.19416 0.94039 0.93102 1.05945 1.20338 0.97949 0.94322 0.98098 1.21676 1.01177 1.01376 0.95577 0.91629 0.88435 0.91982 0.91287 0.91865 0.83952 0.85377 0.89924 0.93909 0.95493 0.89976 0.93620 0.91467 0.92487 0.95779 0.93118 0.92246 0.96467 0.84986 0.90267 0.90875 0.91078 0.93625 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.66 5.46 71.98 0.39 1.06 16 3 O -0.32 -6.91 9.27 -92.39 -0.86 -7.76 16 4 C 0.12 2.84 6.66 22.51 0.15 2.99 16 5 C -0.21 -4.85 9.04 22.37 0.20 -4.65 16 6 C -0.07 -1.92 9.69 22.25 0.22 -1.70 16 7 C -0.11 -3.05 4.89 -19.85 -0.10 -3.15 16 8 C 0.10 2.92 5.12 85.56 0.44 3.35 16 9 N -0.54 -20.02 4.65 -900.94 -4.19 -24.21 16 10 C 0.07 2.40 5.15 86.33 0.44 2.84 16 11 C -0.11 -4.43 6.09 30.65 0.19 -4.24 16 12 C -0.10 -5.06 5.03 30.68 0.15 -4.91 16 13 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 14 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 15 C -0.53 -29.96 8.56 25.60 0.22 -29.74 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.69 5.30 84.65 0.45 1.14 16 18 N -0.92 -54.10 11.36 21.45 0.24 -53.86 16 19 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.08 3.51 4.68 86.33 0.40 3.92 16 24 C -0.08 -1.96 7.50 22.26 0.17 -1.80 16 25 C -0.12 -2.96 5.15 -19.77 -0.10 -3.06 16 26 C -0.07 -1.36 5.79 29.85 0.17 -1.19 16 27 C -0.14 -2.67 9.89 71.98 0.71 -1.96 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 32 H 0.06 0.91 7.66 -2.38 -0.02 0.89 16 33 H 0.14 2.63 6.30 -2.91 -0.02 2.62 16 34 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.08 2.34 7.93 -2.38 -0.02 2.32 16 36 H 0.04 1.20 8.07 -2.39 -0.02 1.18 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 2.59 5.75 -2.39 -0.01 2.58 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.06 3.17 6.16 -2.38 -0.01 3.16 16 42 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 44 H 0.06 2.50 8.02 -2.38 -0.02 2.48 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.13 2.98 7.95 -2.91 -0.02 2.96 16 47 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 48 H 0.07 1.40 7.68 -2.39 -0.02 1.38 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -63.81 395.74 2.92 -60.89 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.87 Total: 17.89 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 4.82 Total: -39.19 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -3.94 Total: -78.07 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.86 Total: -7.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.81 2.92 -60.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139624165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.202 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds