Wall clock time and date at job start Tue Mar 31 2020 12:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47189 * 2 1 4 4 C 1.53001 * 109.47622 * 240.00071 * 2 1 3 5 5 C 1.50699 * 109.47159 * 119.99779 * 2 1 3 6 6 C 1.38175 * 120.02765 * 0.02562 * 5 2 1 7 7 C 1.38237 * 120.05538 * 179.74459 * 6 5 2 8 8 C 1.38287 * 120.11321 * 359.97438 * 7 6 5 9 9 C 1.38120 * 120.05936 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.02929 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.47185 * 105.89455 * 10 9 8 12 12 C 1.46853 * 110.99717 * 288.61801 * 11 10 9 13 13 C 1.53035 * 109.52102 * 174.15710 * 12 11 10 14 14 C 1.53120 * 109.27552 * 59.18244 * 13 12 11 15 15 C 1.53119 * 109.16145 * 302.33813 * 14 13 12 16 16 H 1.08998 * 109.50463 * 297.72120 * 15 14 13 17 17 C 1.50696 * 109.50544 * 177.59780 * 15 14 13 18 18 H 1.08000 * 120.00055 * 240.20479 * 17 15 14 19 19 C 1.37871 * 120.00211 * 60.19846 * 17 15 14 20 20 N 1.31517 * 119.99679 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00451 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47164 * 59.99975 * 21 19 17 23 23 H 1.48503 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46912 * 300.00266 * 21 19 17 25 25 C 1.46842 * 111.00132 * 164.40865 * 11 10 9 26 26 C 1.38711 * 120.02949 * 179.72460 * 5 2 1 27 27 O 1.35902 * 120.05636 * 0.25537 * 26 5 2 28 28 H 1.09003 * 109.47284 * 299.99963 * 1 2 3 29 29 H 1.09009 * 109.47121 * 59.99923 * 1 2 3 30 30 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47285 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47047 * 299.99869 * 3 2 1 33 33 H 1.09003 * 109.46977 * 59.99849 * 3 2 1 34 34 H 1.09000 * 109.46630 * 300.00403 * 4 2 1 35 35 H 1.08999 * 109.47075 * 59.99849 * 4 2 1 36 36 H 1.08999 * 109.47112 * 180.02562 * 4 2 1 37 37 H 1.08000 * 119.96567 * 359.72525 * 6 5 2 38 38 H 1.07999 * 119.94242 * 180.02562 * 7 6 5 39 39 H 1.08006 * 119.97213 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.46998 * 225.88880 * 10 9 8 41 41 H 1.08989 * 109.47456 * 345.89135 * 10 9 8 42 42 H 1.08995 * 109.45852 * 294.17813 * 12 11 10 43 43 H 1.09004 * 109.46005 * 54.14460 * 12 11 10 44 44 H 1.08997 * 109.50546 * 299.23794 * 13 12 11 45 45 H 1.08996 * 109.53437 * 179.13752 * 13 12 11 46 46 H 1.09004 * 109.52201 * 182.43843 * 14 13 12 47 47 H 1.08999 * 109.57669 * 62.27834 * 14 13 12 48 48 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.46156 * 305.85078 * 25 11 10 50 50 H 1.08996 * 109.46435 * 65.82197 * 25 11 10 51 51 H 0.96698 * 113.99422 * 95.24337 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1349 -1.2361 2.1401 7 6 1.5951 -1.8925 3.2664 8 6 2.9540 -2.0251 3.4854 9 6 3.8552 -1.5013 2.5792 10 6 5.3359 -1.6458 2.8189 11 7 5.8836 -2.6571 1.9049 12 6 5.4482 -4.0056 2.2905 13 6 5.9146 -5.0140 1.2380 14 6 7.4410 -4.9618 1.1294 15 6 7.8711 -3.5358 0.7744 16 1 7.4596 -3.2628 -0.1973 17 6 9.3754 -3.4619 0.7234 18 1 9.9060 -2.7932 1.3850 19 6 10.0744 -4.2480 -0.1678 20 7 9.4283 -5.0621 -0.9737 21 14 11.9392 -4.1571 -0.2305 22 1 12.4979 -4.5319 1.0933 23 1 12.4460 -5.0937 -1.2655 24 1 12.3560 -2.7727 -0.5697 25 6 7.3480 -2.5702 1.8403 26 6 3.3959 -0.8424 1.4477 27 8 4.2806 -0.3270 0.5541 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 0.0731 -1.1339 1.9712 38 1 0.8920 -2.3031 3.9760 39 1 3.3110 -2.5387 4.3659 40 1 5.8279 -0.6897 2.6396 41 1 5.5087 -1.9557 3.8494 42 1 5.8798 -4.2639 3.2574 43 1 4.3607 -4.0300 2.3601 44 1 5.4723 -4.7643 0.2736 45 1 5.6048 -6.0169 1.5317 46 1 7.7744 -5.6474 0.3503 47 1 7.8850 -5.2496 2.0823 48 1 9.9200 -5.6149 -1.6010 49 1 7.6404 -1.5521 1.5829 50 1 7.7707 -2.8353 2.8094 51 1 4.6011 0.5562 0.7828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143110376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:02 Heat of formation + Delta-G solvation = -34.318120 kcal Electronic energy + Delta-G solvation = -27932.194504 eV Core-core repulsion = 24409.619733 eV Total energy + Delta-G solvation = -3522.574771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.44597 -38.14096 -36.52297 -36.38176 -33.77782 -32.00839 -30.32217 -29.61003 -29.32464 -27.62826 -27.21886 -25.51633 -24.86367 -22.82868 -22.25440 -21.54169 -20.73806 -18.97607 -18.48529 -18.04482 -16.39144 -15.99738 -15.88098 -15.15527 -14.91386 -14.52084 -14.27844 -14.22263 -13.96007 -13.75343 -13.57510 -13.17577 -12.80541 -12.51488 -12.46539 -12.28089 -12.11269 -11.90384 -11.83763 -11.78948 -11.63664 -11.53264 -11.33070 -11.10183 -10.94890 -10.89607 -10.69852 -10.62469 -10.59308 -10.04549 -9.89802 -9.76767 -9.39613 -9.00518 -8.64838 -8.58503 -8.35033 -8.24338 -7.53436 -5.91834 -3.98049 1.37869 1.39003 3.35074 3.39813 3.41974 3.67472 4.34794 4.46074 4.52710 4.70358 4.74705 4.94335 5.00537 5.07364 5.22376 5.34112 5.37937 5.47105 5.50062 5.59266 5.63470 5.66866 5.71255 5.82882 5.85796 5.88582 5.91524 5.95683 6.00075 6.04765 6.15451 6.17534 6.22628 6.33362 6.45295 6.47277 6.55028 6.55411 6.59697 6.72384 6.80747 6.82798 6.92779 7.04878 7.30429 7.47481 7.76090 7.80756 7.88773 7.92372 8.16589 8.24802 8.54487 9.06062 9.65741 11.14065 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.003329 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.318067 B = 8408.304016 C = 8988.546767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.096 4.096 10 C 0.099 3.901 11 N -0.522 5.522 12 C 0.065 3.935 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.057 3.943 16 H 0.035 0.965 17 C -0.515 4.515 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.070 3.930 26 C 0.139 3.861 27 O -0.472 6.472 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.089 0.911 47 H 0.028 0.972 48 H 0.259 0.741 49 H 0.058 0.942 50 H 0.015 0.985 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.150 10.176 6.148 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.150 4.150 8 C -0.127 4.127 9 C -0.097 4.097 10 C -0.029 4.029 11 N -0.246 5.246 12 C -0.063 4.063 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.038 3.962 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.056 4.056 26 C 0.094 3.906 27 O -0.282 6.282 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.034 0.966 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -18.356 9.605 5.229 21.367 hybrid contribution 1.399 0.132 1.119 1.796 sum -16.957 9.737 6.348 20.559 Atomic orbital electron populations 1.21977 0.94749 1.01786 1.01552 1.19341 0.94863 0.94874 0.92864 1.21899 1.01851 0.94679 1.01371 1.21946 1.03442 0.99458 0.95076 1.20118 0.92520 1.00508 0.96827 1.20991 0.99385 0.98723 0.94164 1.21029 0.95371 1.00587 0.98041 1.20945 0.92907 0.99611 0.99193 1.20284 0.96150 0.99047 0.94235 1.20832 0.90333 0.97248 0.94467 1.61962 1.11590 1.02728 1.48288 1.22020 0.98488 0.89251 0.96554 1.21652 0.99637 0.95749 0.98337 1.21644 0.90488 1.01977 1.00660 1.18634 0.94207 0.89814 0.93517 0.94682 1.21117 0.91516 1.23029 1.19687 0.92994 1.24928 0.98041 0.95390 0.95448 1.69892 1.35083 1.25384 1.22300 0.86707 0.86126 0.77829 0.77575 1.20447 1.21347 1.20332 1.22303 0.83604 1.00779 0.98938 1.18009 0.87371 0.96722 0.88503 1.84986 1.60983 1.35719 1.46483 0.92591 0.92534 0.92397 0.91867 0.92477 0.93057 0.93081 0.93111 0.90078 0.85773 0.86355 0.86352 0.90648 0.94961 0.96287 0.92515 0.92158 0.93779 0.89238 0.95320 0.93059 0.92359 0.96646 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.13 37.15 0.26 -0.98 16 2 C -0.02 -0.20 0.75 -155.66 -0.12 -0.32 16 3 C -0.14 -1.29 8.26 37.16 0.31 -0.98 16 4 C -0.14 -1.69 8.25 37.16 0.31 -1.39 16 5 C -0.10 -1.20 4.77 -104.47 -0.50 -1.70 16 6 C -0.11 -1.28 8.97 -39.61 -0.36 -1.63 16 7 C -0.13 -1.47 10.04 -39.56 -0.40 -1.87 16 8 C -0.11 -1.35 9.07 -39.61 -0.36 -1.71 16 9 C -0.10 -1.35 4.64 -104.48 -0.48 -1.84 16 10 C 0.10 1.53 4.71 -4.98 -0.02 1.50 16 11 N -0.52 -9.90 4.60 -236.12 -1.09 -10.99 16 12 C 0.06 1.21 5.30 -3.83 -0.02 1.19 16 13 C -0.12 -2.40 6.09 -26.65 -0.16 -2.57 16 14 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 15 C 0.06 1.46 2.26 -91.69 -0.21 1.25 16 16 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.51 -14.32 8.56 -34.44 -0.29 -14.61 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.76 11.36 55.43 0.63 -25.13 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.07 1.52 4.67 -3.83 -0.02 1.51 16 26 C 0.14 1.90 6.27 -39.21 -0.25 1.66 16 27 O -0.47 -6.44 9.21 -19.43 -0.18 -6.62 16 28 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.51 7.52 -51.93 -0.39 0.12 16 31 H 0.06 0.57 5.50 -51.93 -0.29 0.29 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 37 H 0.12 1.14 5.89 -52.49 -0.31 0.83 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.34 7.99 -52.48 -0.42 0.92 16 40 H 0.08 1.10 7.77 -51.93 -0.40 0.69 16 41 H 0.03 0.48 7.86 -51.94 -0.41 0.07 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.99 6.84 -51.93 -0.36 0.64 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.38 3.67 7.92 45.56 0.36 4.03 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -30.11 384.86 -10.66 -40.77 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.27 Total: 3.31 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.53 Total: -23.61 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.46 Total: -36.12 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.18 Total: -6.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.11 -10.66 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143110376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.450 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds