Wall clock time and date at job start Tue Mar 31 2020 12:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47189 * 2 1 4 4 C 1.53001 * 109.47622 * 240.00071 * 2 1 3 5 5 C 1.50699 * 109.47159 * 119.99779 * 2 1 3 6 6 C 1.38175 * 120.02765 * 0.02562 * 5 2 1 7 7 C 1.38237 * 120.05538 * 179.74459 * 6 5 2 8 8 C 1.38287 * 120.11321 * 359.97438 * 7 6 5 9 9 C 1.38120 * 120.05936 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.02929 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.47185 * 105.89455 * 10 9 8 12 12 C 1.46853 * 110.99717 * 288.61801 * 11 10 9 13 13 C 1.53035 * 109.52102 * 174.15710 * 12 11 10 14 14 C 1.53120 * 109.27552 * 59.18244 * 13 12 11 15 15 C 1.53119 * 109.16145 * 302.33813 * 14 13 12 16 16 H 1.08998 * 109.50463 * 297.72120 * 15 14 13 17 17 C 1.50696 * 109.50544 * 177.59780 * 15 14 13 18 18 H 1.08000 * 120.00055 * 240.20479 * 17 15 14 19 19 C 1.37871 * 120.00211 * 60.19846 * 17 15 14 20 20 N 1.31517 * 119.99679 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00451 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47164 * 59.99975 * 21 19 17 23 23 H 1.48503 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46912 * 300.00266 * 21 19 17 25 25 C 1.46842 * 111.00132 * 164.40865 * 11 10 9 26 26 C 1.38711 * 120.02949 * 179.72460 * 5 2 1 27 27 O 1.35902 * 120.05636 * 0.25537 * 26 5 2 28 28 H 1.09003 * 109.47284 * 299.99963 * 1 2 3 29 29 H 1.09009 * 109.47121 * 59.99923 * 1 2 3 30 30 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47285 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47047 * 299.99869 * 3 2 1 33 33 H 1.09003 * 109.46977 * 59.99849 * 3 2 1 34 34 H 1.09000 * 109.46630 * 300.00403 * 4 2 1 35 35 H 1.08999 * 109.47075 * 59.99849 * 4 2 1 36 36 H 1.08999 * 109.47112 * 180.02562 * 4 2 1 37 37 H 1.08000 * 119.96567 * 359.72525 * 6 5 2 38 38 H 1.07999 * 119.94242 * 180.02562 * 7 6 5 39 39 H 1.08006 * 119.97213 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.46998 * 225.88880 * 10 9 8 41 41 H 1.08989 * 109.47456 * 345.89135 * 10 9 8 42 42 H 1.08995 * 109.45852 * 294.17813 * 12 11 10 43 43 H 1.09004 * 109.46005 * 54.14460 * 12 11 10 44 44 H 1.08997 * 109.50546 * 299.23794 * 13 12 11 45 45 H 1.08996 * 109.53437 * 179.13752 * 13 12 11 46 46 H 1.09004 * 109.52201 * 182.43843 * 14 13 12 47 47 H 1.08999 * 109.57669 * 62.27834 * 14 13 12 48 48 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.46156 * 305.85078 * 25 11 10 50 50 H 1.08996 * 109.46435 * 65.82197 * 25 11 10 51 51 H 0.96698 * 113.99422 * 95.24337 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1349 -1.2361 2.1401 7 6 1.5951 -1.8925 3.2664 8 6 2.9540 -2.0251 3.4854 9 6 3.8552 -1.5013 2.5792 10 6 5.3359 -1.6458 2.8189 11 7 5.8836 -2.6571 1.9049 12 6 5.4482 -4.0056 2.2905 13 6 5.9146 -5.0140 1.2380 14 6 7.4410 -4.9618 1.1294 15 6 7.8711 -3.5358 0.7744 16 1 7.4596 -3.2628 -0.1973 17 6 9.3754 -3.4619 0.7234 18 1 9.9060 -2.7932 1.3850 19 6 10.0744 -4.2480 -0.1678 20 7 9.4283 -5.0621 -0.9737 21 14 11.9392 -4.1571 -0.2305 22 1 12.4979 -4.5319 1.0933 23 1 12.4460 -5.0937 -1.2655 24 1 12.3560 -2.7727 -0.5697 25 6 7.3480 -2.5702 1.8403 26 6 3.3959 -0.8424 1.4477 27 8 4.2806 -0.3270 0.5541 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 0.0731 -1.1339 1.9712 38 1 0.8920 -2.3031 3.9760 39 1 3.3110 -2.5387 4.3659 40 1 5.8279 -0.6897 2.6396 41 1 5.5087 -1.9557 3.8494 42 1 5.8798 -4.2639 3.2574 43 1 4.3607 -4.0300 2.3601 44 1 5.4723 -4.7643 0.2736 45 1 5.6048 -6.0169 1.5317 46 1 7.7744 -5.6474 0.3503 47 1 7.8850 -5.2496 2.0823 48 1 9.9200 -5.6149 -1.6010 49 1 7.6404 -1.5521 1.5829 50 1 7.7707 -2.8353 2.8094 51 1 4.6011 0.5562 0.7828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143110376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:01 Heat of formation + Delta-G solvation = -51.072626 kcal Electronic energy + Delta-G solvation = -27932.921034 eV Core-core repulsion = 24409.619733 eV Total energy + Delta-G solvation = -3523.301301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.39674 -39.69696 -37.48802 -37.36836 -35.53835 -33.73258 -31.81674 -31.22426 -30.23516 -28.42642 -28.06105 -26.90851 -26.74097 -23.82665 -23.66276 -23.22755 -21.97272 -20.35483 -19.83791 -19.00710 -18.41106 -17.05050 -16.88391 -16.61558 -16.39733 -15.93351 -15.60311 -15.13046 -15.07946 -14.94198 -14.85452 -14.60653 -14.37976 -14.18281 -13.73806 -13.43018 -13.28696 -13.08406 -12.94403 -12.82542 -12.75921 -12.67475 -12.56372 -12.52259 -12.43230 -12.37962 -12.07658 -11.85687 -11.75313 -11.71766 -11.49709 -11.39902 -10.91765 -10.75739 -10.67089 -10.37129 -9.55497 -9.28544 -9.03998 -8.06755 -6.21525 0.44230 0.47428 1.41377 1.43159 1.50716 2.43197 2.72905 3.19857 3.26878 3.46770 3.68996 3.84959 4.04488 4.14767 4.18320 4.20902 4.26253 4.36953 4.40696 4.44783 4.57527 4.59339 4.64892 4.69130 4.75456 4.82007 4.83686 4.88574 4.96168 4.97185 5.03006 5.05473 5.08591 5.10343 5.14855 5.18819 5.20723 5.35417 5.37603 5.44798 5.50629 5.52671 5.62815 5.64385 5.67004 5.80306 5.97751 6.05837 6.13675 6.22749 6.39569 6.47978 6.91479 7.01968 7.46312 8.97844 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.003329 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.318067 B = 8408.304016 C = 8988.546767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.131 4.131 8 C -0.113 4.113 9 C -0.116 4.116 10 C 0.103 3.897 11 N -0.533 5.533 12 C 0.073 3.927 13 C -0.109 4.109 14 C -0.101 4.101 15 C 0.056 3.944 16 H -0.009 1.009 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.956 3.044 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.086 3.914 26 C 0.125 3.875 27 O -0.490 6.490 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.024 0.976 48 H 0.260 0.740 49 H 0.056 0.944 50 H 0.014 0.986 51 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.773 10.966 7.665 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.108 4.108 6 C -0.131 4.131 7 C -0.149 4.149 8 C -0.132 4.132 9 C -0.117 4.117 10 C -0.024 4.024 11 N -0.257 5.257 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.140 4.140 15 C 0.038 3.962 16 H 0.010 0.990 17 C -0.575 4.575 18 H 0.071 0.929 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.042 4.042 26 C 0.080 3.920 27 O -0.302 6.302 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.033 0.967 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -19.989 10.414 6.762 23.532 hybrid contribution 1.847 -0.094 0.610 1.947 sum -18.142 10.320 7.372 22.136 Atomic orbital electron populations 1.21953 0.93045 1.02093 1.02663 1.19371 0.96185 0.95091 0.91283 1.21881 1.01572 0.93999 1.02154 1.21898 1.01740 0.99216 0.96793 1.20348 0.92098 1.00740 0.97658 1.21331 1.00423 0.97664 0.93693 1.21356 0.95261 0.99862 0.98391 1.21137 0.93419 0.99415 0.99189 1.20228 0.95313 1.00812 0.95391 1.20824 0.91464 0.96112 0.93985 1.61867 1.09638 1.03853 1.50343 1.21937 0.99455 0.88398 0.95731 1.21557 0.96650 0.98000 0.98476 1.21443 0.93207 1.00345 0.98971 1.18534 0.93392 0.91599 0.92723 0.99050 1.21500 0.92939 1.23154 1.19942 0.92917 1.25749 1.02809 0.94968 0.95044 1.70051 1.36803 1.25950 1.22780 0.85657 0.80375 0.78044 0.77830 1.19577 1.20987 1.19591 1.21951 0.85627 0.99354 0.97224 1.18226 0.88088 0.97196 0.88510 1.84954 1.61368 1.36823 1.47032 0.91347 0.91609 0.92467 0.92416 0.91611 0.92282 0.94342 0.91802 0.92646 0.83515 0.83631 0.85215 0.90365 0.93962 0.95533 0.90667 0.93967 0.91478 0.92546 0.95741 0.93119 0.92511 0.96738 0.75249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.13 71.98 0.51 -1.56 16 2 C -0.02 -0.37 0.75 -52.93 -0.04 -0.41 16 3 C -0.14 -2.34 8.26 71.98 0.59 -1.74 16 4 C -0.14 -3.29 8.25 71.98 0.59 -2.69 16 5 C -0.11 -2.45 4.77 -19.77 -0.09 -2.54 16 6 C -0.11 -2.20 8.97 22.25 0.20 -2.01 16 7 C -0.13 -2.50 10.04 22.28 0.22 -2.28 16 8 C -0.11 -2.56 9.07 22.25 0.20 -2.35 16 9 C -0.12 -3.12 4.64 -19.77 -0.09 -3.22 16 10 C 0.10 3.09 4.71 85.55 0.40 3.50 16 11 N -0.53 -20.17 4.60 -900.93 -4.15 -24.32 16 12 C 0.07 2.64 5.30 86.32 0.46 3.10 16 13 C -0.11 -4.55 6.09 30.65 0.19 -4.36 16 14 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 15 C 0.06 3.00 2.26 -11.49 -0.03 2.97 16 16 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 17 C -0.54 -30.64 8.56 25.60 0.22 -30.42 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.74 5.30 84.65 0.45 1.19 16 20 N -0.92 -54.91 11.36 21.45 0.24 -54.66 16 21 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 C 0.09 3.78 4.67 86.33 0.40 4.18 16 26 C 0.12 3.33 6.27 22.51 0.14 3.47 16 27 O -0.49 -13.60 9.21 -92.44 -0.85 -14.46 16 28 H 0.07 0.85 7.51 -2.39 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.85 7.52 -2.39 -0.02 0.84 16 31 H 0.06 1.02 5.50 -2.39 -0.01 1.01 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.59 6.13 -2.39 -0.01 1.58 16 37 H 0.15 2.15 5.89 -2.91 -0.02 2.13 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.13 2.57 7.99 -2.91 -0.02 2.55 16 40 H 0.08 2.25 7.77 -2.39 -0.02 2.23 16 41 H 0.04 1.18 7.86 -2.39 -0.02 1.16 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 2.49 6.84 -2.38 -0.02 2.47 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.06 3.20 6.17 -2.38 -0.01 3.19 16 47 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 49 H 0.06 2.47 7.96 -2.38 -0.02 2.45 16 50 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.39 7.80 7.92 -74.06 -0.59 7.21 16 Total: -1.00 -66.53 384.86 2.07 -64.46 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.31 Total: 22.49 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 4.49 Total: -40.15 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.90 Total: -78.99 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.85 Total: -14.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.53 2.07 -64.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143110376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.386 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds