Wall clock time and date at job start Tue Mar 31 2020 12:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47025 * 2 1 4 4 C 1.52999 * 109.47175 * 240.00293 * 2 1 3 5 5 C 1.50698 * 109.47422 * 119.99984 * 2 1 3 6 6 C 1.38171 * 120.02521 * 0.02562 * 5 2 1 7 7 C 1.38244 * 120.05436 * 180.25752 * 6 5 2 8 8 C 1.38294 * 120.11199 * 359.44067 * 7 6 5 9 9 C 1.38125 * 120.05036 * 0.55704 * 8 7 6 10 10 C 1.50703 * 120.02202 * 179.70528 * 9 8 7 11 11 N 1.46904 * 109.46607 * 260.02013 * 10 9 8 12 12 C 1.46846 * 111.00214 * 45.79185 * 11 10 9 13 13 C 1.53031 * 109.52050 * 185.83929 * 12 11 10 14 14 C 1.53120 * 109.28012 * 300.81603 * 13 12 11 15 15 C 1.50698 * 109.57820 * 177.59181 * 14 13 12 16 16 H 1.07995 * 120.00500 * 240.29409 * 15 14 13 17 17 C 1.37884 * 119.99942 * 60.28699 * 15 14 13 18 18 N 1.31518 * 119.99462 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47482 * 60.00200 * 19 17 15 21 21 H 1.48507 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47065 * 299.99924 * 19 17 15 23 23 C 1.53125 * 109.15870 * 57.66257 * 14 13 12 24 24 C 1.46848 * 110.99647 * 170.00298 * 11 10 9 25 25 C 1.38706 * 120.03077 * 179.97438 * 5 2 1 26 26 O 1.35899 * 120.05784 * 359.97438 * 25 5 2 27 27 H 1.08999 * 109.47189 * 300.00177 * 1 2 3 28 28 H 1.09006 * 109.47049 * 59.99868 * 1 2 3 29 29 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47029 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47546 * 299.99550 * 3 2 1 32 32 H 1.08999 * 109.47282 * 59.99879 * 3 2 1 33 33 H 1.09000 * 109.47125 * 299.99472 * 4 2 1 34 34 H 1.08993 * 109.47813 * 59.99881 * 4 2 1 35 35 H 1.09005 * 109.47133 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.96962 * 359.97130 * 6 5 2 37 37 H 1.08001 * 119.94445 * 179.70422 * 7 6 5 38 38 H 1.07994 * 119.97164 * 180.26057 * 8 7 6 39 39 H 1.08998 * 109.47212 * 20.01548 * 10 9 8 40 40 H 1.09005 * 109.47199 * 140.02453 * 10 9 8 41 41 H 1.09000 * 109.45962 * 305.85134 * 12 11 10 42 42 H 1.08996 * 109.45836 * 65.82477 * 12 11 10 43 43 H 1.09005 * 109.50415 * 180.87958 * 13 12 11 44 44 H 1.08999 * 109.54299 * 60.78152 * 13 12 11 45 45 H 1.08998 * 109.52864 * 297.75316 * 14 13 12 46 46 H 0.97003 * 119.99332 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.50635 * 182.40729 * 23 14 13 48 48 H 1.09000 * 109.53837 * 62.30365 * 23 14 13 49 49 H 1.08996 * 109.46166 * 294.17482 * 24 11 10 50 50 H 1.09007 * 109.46596 * 54.15399 * 24 11 10 51 51 H 0.96706 * 114.00065 * 89.99795 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.1350 -1.2362 2.1400 7 6 1.5952 -1.8833 3.2717 8 6 2.9542 -2.0163 3.4905 9 6 3.8553 -1.4924 2.5842 10 6 5.3361 -1.6319 2.8266 11 7 5.8612 -0.3780 3.3834 12 6 4.9942 0.1252 4.4565 13 6 5.4894 1.4998 4.9117 14 6 6.9319 1.3778 5.4106 15 6 7.4464 2.7381 5.8054 16 1 8.3094 3.1545 5.3073 17 6 6.8151 3.4513 6.8024 18 7 5.7643 2.9440 7.4092 19 14 7.4524 5.1377 7.2913 20 1 7.4046 6.0447 6.1165 21 1 6.6056 5.6907 8.3788 22 1 8.8537 5.0183 7.7679 23 6 7.8046 0.8063 4.2897 24 6 7.2423 -0.5483 3.8525 25 6 3.3959 -0.8379 1.4502 26 8 4.2805 -0.3230 0.5563 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 0.0731 -1.1374 1.9691 37 1 0.8922 -2.2894 3.9839 38 1 3.3112 -2.5259 4.3732 39 1 5.5140 -2.4447 3.5307 40 1 5.8395 -1.8502 1.8848 41 1 3.9723 0.2113 4.0873 42 1 5.0192 -0.5669 5.2981 43 1 4.8550 1.8662 5.7189 44 1 5.4516 2.1966 4.0744 45 1 6.9641 0.7119 6.2729 46 1 5.3204 3.4456 8.1109 47 1 8.8244 0.6770 4.6524 48 1 7.8040 1.4914 3.4419 49 1 7.2567 -1.2372 4.6970 50 1 7.8533 -0.9512 3.0446 51 1 4.5370 0.5914 0.7388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143111087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:07 Heat of formation + Delta-G solvation = -34.895481 kcal Electronic energy + Delta-G solvation = -28060.566214 eV Core-core repulsion = 24537.966407 eV Total energy + Delta-G solvation = -3522.599807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.52280 -38.24749 -36.50559 -36.38514 -33.96652 -31.86925 -30.07538 -29.70075 -29.32565 -27.67628 -27.26789 -26.29986 -24.29789 -22.82022 -22.18607 -21.76266 -20.74875 -18.94609 -18.58448 -17.96139 -16.37483 -16.12117 -15.89100 -15.33904 -14.90311 -14.44244 -14.39943 -14.28611 -14.05296 -13.84343 -13.59873 -13.02085 -12.89586 -12.51930 -12.45553 -12.31973 -12.22445 -11.93286 -11.84222 -11.75977 -11.63980 -11.56577 -11.33563 -11.12953 -10.95998 -10.91153 -10.73862 -10.67373 -10.46373 -10.19328 -9.99442 -9.84843 -9.41115 -8.95531 -8.73418 -8.52752 -8.38423 -8.27144 -7.70425 -5.95409 -4.00745 1.37634 1.39213 3.33544 3.38118 3.40934 3.65574 4.40098 4.46341 4.51231 4.59916 4.73866 4.93912 4.95698 5.08285 5.21314 5.34543 5.36587 5.48964 5.50218 5.57885 5.62647 5.70314 5.74087 5.77358 5.81202 5.86051 5.91672 5.95677 5.96288 6.03573 6.13641 6.18957 6.24170 6.26510 6.33525 6.36060 6.54577 6.56671 6.63929 6.65823 6.70315 6.87899 6.92475 7.09719 7.17920 7.46175 7.63835 7.71149 7.84932 7.87053 8.06832 8.18398 8.50374 9.02812 9.63474 11.10638 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003519 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.784597 B = 7953.980980 C = 8378.039917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.129 4.129 8 C -0.104 4.104 9 C -0.096 4.096 10 C 0.095 3.905 11 N -0.528 5.528 12 C 0.056 3.944 13 C -0.102 4.102 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.105 4.105 24 C 0.061 3.939 25 C 0.134 3.866 26 O -0.490 6.490 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.019 0.981 46 H 0.259 0.741 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.057 0.943 51 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 -9.274 -13.563 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 C -0.200 4.200 4 C -0.197 4.197 5 C -0.101 4.101 6 C -0.131 4.131 7 C -0.147 4.147 8 C -0.123 4.123 9 C -0.097 4.097 10 C -0.032 4.032 11 N -0.253 5.253 12 C -0.071 4.071 13 C -0.140 4.140 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.143 4.143 24 C -0.067 4.067 25 C 0.088 3.912 26 O -0.302 6.302 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.041 0.959 50 H 0.076 0.924 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.038 -9.418 -14.049 19.668 hybrid contribution 0.286 0.730 1.367 1.576 sum -9.752 -8.688 -12.682 18.205 Atomic orbital electron populations 1.21977 0.94627 1.01688 1.01819 1.19342 0.95025 0.95030 0.92586 1.21915 1.01814 0.94508 1.01770 1.21931 1.02958 0.99358 0.95497 1.20121 0.92556 1.00364 0.97020 1.21012 0.99461 0.98539 0.94102 1.21061 0.95399 1.00439 0.97765 1.20978 0.92955 0.99865 0.98482 1.20119 0.95988 0.99734 0.93844 1.20975 0.90364 0.91927 0.99949 1.62160 1.02551 1.25786 1.34769 1.22328 0.95491 0.98583 0.90735 1.21639 1.00433 0.91959 0.99987 1.18672 0.90986 0.95515 0.91830 1.21179 1.13115 1.02117 1.18518 0.92845 1.24962 0.95009 0.97801 0.96177 1.69875 1.20370 1.37909 1.24953 0.86711 0.78785 0.84695 0.78096 1.20317 1.21389 1.20391 1.21670 0.98578 0.94016 1.00024 1.22122 0.88679 0.98717 0.97176 1.17941 0.87337 0.97008 0.88891 1.84699 1.62253 1.33515 1.49713 0.92325 0.92519 0.92484 0.91914 0.92457 0.92546 0.93261 0.93019 0.90527 0.85671 0.86158 0.86197 0.94892 0.89999 0.92337 0.96259 0.89138 0.94075 0.96276 0.93092 0.93242 0.92507 0.95866 0.92402 0.74995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.13 37.15 0.26 -1.01 16 2 C -0.02 -0.21 0.75 -155.67 -0.12 -0.32 16 3 C -0.14 -1.47 8.26 37.16 0.31 -1.17 16 4 C -0.14 -1.43 8.26 37.16 0.31 -1.12 16 5 C -0.10 -1.24 4.77 -104.47 -0.50 -1.74 16 6 C -0.11 -1.33 8.97 -39.60 -0.36 -1.68 16 7 C -0.13 -1.56 10.04 -39.56 -0.40 -1.95 16 8 C -0.10 -1.41 8.64 -39.60 -0.34 -1.75 16 9 C -0.10 -1.38 3.70 -104.47 -0.39 -1.77 16 10 C 0.10 1.43 5.07 -4.97 -0.03 1.41 16 11 N -0.53 -9.21 4.80 -236.11 -1.13 -10.34 16 12 C 0.06 1.10 4.80 -3.84 -0.02 1.08 16 13 C -0.10 -2.40 5.12 -26.65 -0.14 -2.53 16 14 C 0.05 1.20 2.16 -91.65 -0.20 1.01 16 15 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -25.44 11.37 55.43 0.63 -24.81 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -2.19 5.32 -26.64 -0.14 -2.34 16 24 C 0.06 1.09 5.42 -3.83 -0.02 1.07 16 25 C 0.13 1.83 6.27 -39.22 -0.25 1.58 16 26 O -0.49 -6.36 9.30 -19.42 -0.18 -6.54 16 27 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 7.52 -51.93 -0.39 0.09 16 30 H 0.06 0.65 5.32 -51.93 -0.28 0.37 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.87 6.14 -51.93 -0.32 0.55 16 36 H 0.13 1.22 5.90 -52.49 -0.31 0.91 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 39 H 0.03 0.49 7.94 -51.93 -0.41 0.07 16 40 H 0.08 1.20 7.85 -51.93 -0.41 0.80 16 41 H 0.06 1.11 6.03 -51.93 -0.31 0.80 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 51 H 0.39 4.59 7.57 45.56 0.35 4.94 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -28.53 382.68 -10.58 -39.11 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.25 Total: 4.48 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.39 Total: -23.97 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.50 Total: -35.15 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.18 Total: -6.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.53 -10.58 -39.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143111087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.218 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds