Wall clock time and date at job start Tue Mar 31 2020 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38151 * 120.02334 * 265.00058 * 3 2 1 5 5 C 1.38268 * 120.05087 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.94133 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46823 * 89.99820 * 6 5 4 8 8 C 1.46846 * 110.99909 * 45.79186 * 7 6 5 9 9 C 1.53038 * 109.52111 * 185.83301 * 8 7 6 10 10 C 1.53114 * 109.27994 * 300.82187 * 9 8 7 11 11 C 1.50707 * 109.52283 * 177.56022 * 10 9 8 12 12 H 1.08000 * 120.00059 * 240.32014 * 11 10 9 13 13 C 1.37874 * 120.00043 * 60.31537 * 11 10 9 14 14 N 1.31521 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47239 * 60.00077 * 15 13 11 17 17 H 1.48504 * 109.47249 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47017 * 299.99792 * 15 13 11 19 19 C 1.53116 * 109.16110 * 57.65614 * 10 9 8 20 20 C 1.46845 * 110.99467 * 170.00030 * 7 6 5 21 21 C 1.38266 * 120.11681 * 359.97438 * 5 4 3 22 22 C 1.38142 * 120.05348 * 359.97438 * 21 5 4 23 23 C 1.50698 * 120.03114 * 180.02562 * 22 21 5 24 24 C 1.53002 * 109.47415 * 265.00276 * 23 22 21 25 25 C 1.38728 * 120.03009 * 84.71921 * 3 2 1 26 26 O 1.35897 * 120.05907 * 0.02562 * 25 3 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 28 28 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 29 29 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 31 31 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 32 32 H 1.07999 * 119.97444 * 359.94639 * 4 3 2 33 33 H 1.08997 * 109.47131 * 210.00134 * 6 5 4 34 34 H 1.08998 * 109.46846 * 330.00207 * 6 5 4 35 35 H 1.08998 * 109.46376 * 305.85490 * 8 7 6 36 36 H 1.09001 * 109.45965 * 65.82360 * 8 7 6 37 37 H 1.09003 * 109.50270 * 180.87972 * 9 8 7 38 38 H 1.09004 * 109.53396 * 60.78712 * 9 8 7 39 39 H 1.09001 * 109.52600 * 297.74826 * 10 9 8 40 40 H 0.97000 * 119.99611 * 180.02562 * 14 13 11 41 41 H 1.09007 * 109.50403 * 182.40485 * 19 10 9 42 42 H 1.09004 * 109.53867 * 62.30415 * 19 10 9 43 43 H 1.09004 * 109.46540 * 294.17348 * 20 7 6 44 44 H 1.08996 * 109.46893 * 54.15800 * 20 7 6 45 45 H 1.07996 * 119.97309 * 180.02562 * 21 5 4 46 46 H 1.09008 * 109.46908 * 25.00322 * 23 22 21 47 47 H 1.08996 * 109.47202 * 144.99780 * 23 22 21 48 48 H 1.09003 * 109.46962 * 59.99633 * 24 23 22 49 49 H 1.08997 * 109.46976 * 179.97438 * 24 23 22 50 50 H 1.08993 * 109.46659 * 299.99795 * 24 23 22 51 51 H 0.96699 * 114.00149 * 89.99812 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1916 5 6 2.8216 3.3415 -1.1923 6 6 3.1800 4.0119 -2.4936 7 7 1.9955 4.6891 -3.0380 8 6 1.3006 5.4539 -1.9946 9 6 -0.0019 6.0244 -2.5605 10 6 0.3186 6.9282 -3.7542 11 6 -0.9640 7.4455 -4.3529 12 1 -1.2095 7.2208 -5.3804 13 6 -1.8241 8.2055 -3.5890 14 7 -1.5250 8.4795 -2.3379 15 14 -3.4142 8.8460 -4.3310 16 1 -4.2480 7.7016 -4.7785 17 1 -4.1558 9.6303 -3.3110 18 1 -3.1029 9.7161 -5.4934 19 6 1.0845 6.1200 -4.8052 20 6 2.3555 5.5467 -4.1743 21 6 2.9538 4.0312 -0.0013 22 6 2.6254 3.4191 1.1928 23 6 2.7692 4.1715 2.4906 24 6 4.1261 3.8490 3.1196 25 6 2.1596 2.1122 1.1960 26 8 1.8320 1.5093 2.3690 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 2.2588 1.5011 -2.1232 33 1 3.9691 4.7435 -2.3201 34 1 3.5288 3.2627 -3.2042 35 1 1.0749 4.7986 -1.1534 36 1 1.9386 6.2709 -1.6575 37 1 -0.5097 6.6051 -1.7904 38 1 -0.6468 5.2078 -2.8851 39 1 0.9308 7.7668 -3.4222 40 1 -2.1303 9.0139 -1.8004 41 1 1.3529 6.7689 -5.6389 42 1 0.4576 5.3045 -5.1660 43 1 2.9885 6.3633 -3.8268 44 1 2.8957 4.9588 -4.9163 45 1 3.3132 5.0496 -0.0046 46 1 2.7029 5.2425 2.2989 47 1 1.9726 3.8746 3.1728 48 1 4.9226 4.1459 2.4372 49 1 4.2302 4.3935 4.0580 50 1 4.1923 2.7781 3.3113 51 1 2.5666 1.0418 2.7896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144148046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:35 Heat of formation + Delta-G solvation = -62.312685 kcal Electronic energy + Delta-G solvation = -27509.091982 eV Core-core repulsion = 23985.303276 eV Total energy + Delta-G solvation = -3523.788706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36877 -39.80972 -37.71728 -35.94199 -35.79838 -34.13386 -32.86835 -31.49022 -30.44938 -29.96928 -27.95041 -25.86513 -25.08292 -24.56636 -23.73267 -23.16613 -21.28580 -21.11320 -20.29956 -19.15152 -18.44487 -17.39810 -16.99890 -16.59442 -16.25446 -16.16587 -15.51626 -15.25973 -14.99128 -14.84147 -14.68480 -14.58951 -14.34070 -14.30045 -13.98355 -13.73887 -13.56926 -13.46674 -13.17861 -12.90658 -12.84185 -12.81342 -12.56158 -12.41073 -12.33624 -12.18836 -12.09392 -11.98878 -11.88135 -11.80873 -11.63652 -11.34660 -11.10006 -10.80671 -10.65852 -10.37933 -9.52877 -9.40549 -9.06341 -8.08029 -6.21721 0.27897 0.40792 1.40303 1.42057 1.49474 2.43364 2.56818 3.18258 3.24162 3.34774 3.74716 3.75964 3.77636 4.20270 4.22630 4.26900 4.28681 4.33537 4.41547 4.44852 4.49357 4.51745 4.53492 4.55339 4.66378 4.72495 4.76383 4.82853 4.90441 4.97049 4.98676 5.01430 5.03815 5.09023 5.09695 5.14543 5.20124 5.23644 5.32723 5.36563 5.40953 5.52930 5.56940 5.60081 5.62042 5.70528 5.95238 5.99372 6.02250 6.27619 6.33754 6.40308 6.89991 6.90029 7.46064 8.96376 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.003335 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.444963 B = 8394.852237 C = 8493.957212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.112 4.112 4 C -0.096 4.096 5 C -0.088 4.088 6 C 0.095 3.905 7 N -0.535 5.535 8 C 0.075 3.925 9 C -0.093 4.093 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.099 4.099 20 C 0.066 3.934 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.082 4.082 24 C -0.136 4.136 25 C 0.101 3.899 26 O -0.496 6.496 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.010 0.990 37 H 0.056 0.944 38 H 0.025 0.975 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.248 -16.794 8.621 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.113 4.113 4 C -0.115 4.115 5 C -0.088 4.088 6 C -0.032 4.032 7 N -0.260 5.260 8 C -0.052 4.052 9 C -0.132 4.132 10 C 0.026 3.974 11 C -0.573 4.573 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.137 4.137 20 C -0.062 4.062 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.193 4.193 25 C 0.057 3.943 26 O -0.308 6.308 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.005 0.995 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.316 -16.822 8.484 22.508 hybrid contribution -0.184 1.446 0.140 1.464 sum 12.131 -15.376 8.623 21.400 Atomic orbital electron populations 1.21694 0.95171 1.02134 1.01068 1.20395 0.95737 0.91005 1.03629 1.20415 1.00488 0.97949 0.92410 1.20940 0.98422 0.94257 0.97839 1.19796 1.00028 0.94645 0.94328 1.21137 0.91043 0.97594 0.93419 1.62102 1.24159 1.31255 1.08443 1.22008 0.95193 0.94319 0.93721 1.21406 0.95009 0.96936 0.99833 1.18652 0.93804 0.92302 0.92619 1.21577 1.05845 1.32021 0.97812 0.93001 1.25755 1.01267 0.96362 0.95263 1.70026 1.38128 1.39369 1.08311 0.85696 0.79805 0.78483 0.78193 1.19736 1.20980 1.19505 1.21539 0.95811 0.98431 0.97911 1.22085 0.96496 0.94524 0.93080 1.20914 1.01003 0.99407 0.91736 1.20314 0.99979 0.94988 0.96057 1.20445 0.99584 0.98871 0.93068 1.21648 0.94921 1.02191 1.00562 1.18118 0.99390 0.91086 0.85749 1.84780 1.40169 1.71521 1.34301 0.93820 0.94014 0.90775 0.89759 0.89948 0.84705 0.94012 0.88173 0.91683 0.97204 0.92511 0.95623 0.99451 0.93162 0.92594 0.93039 0.95965 0.88846 0.86680 0.91901 0.90814 0.92981 0.91278 0.91834 0.74109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.90 71.98 0.71 -2.22 16 2 C -0.07 -1.28 5.78 29.85 0.17 -1.11 16 3 C -0.11 -2.61 5.15 -19.77 -0.10 -2.71 16 4 C -0.10 -2.41 9.33 22.26 0.21 -2.21 16 5 C -0.09 -2.40 4.13 -19.85 -0.08 -2.48 16 6 C 0.09 2.60 5.43 85.56 0.46 3.07 16 7 N -0.53 -18.82 4.80 -900.92 -4.32 -23.15 16 8 C 0.08 3.12 4.58 86.33 0.39 3.52 16 9 C -0.09 -4.75 5.12 30.65 0.16 -4.59 16 10 C 0.04 2.34 2.16 -11.46 -0.02 2.32 16 11 C -0.53 -30.61 8.56 25.60 0.22 -30.39 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 13 C 0.01 0.68 5.31 84.65 0.45 1.13 16 14 N -0.92 -54.96 11.37 21.45 0.24 -54.72 16 15 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 20 C 0.07 2.28 5.42 86.33 0.47 2.75 16 21 C -0.11 -3.09 7.42 22.25 0.17 -2.92 16 22 C -0.11 -2.85 5.15 -19.77 -0.10 -2.95 16 23 C -0.08 -1.78 5.79 29.85 0.17 -1.61 16 24 C -0.14 -2.17 9.90 71.98 0.71 -1.45 16 25 C 0.10 2.41 6.65 22.51 0.15 2.55 16 26 O -0.50 -9.66 11.78 -92.39 -1.09 -10.75 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.24 7.70 -2.39 -0.02 1.23 16 31 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 32 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.04 1.11 8.02 -2.39 -0.02 1.09 16 34 H 0.10 2.30 8.08 -2.39 -0.02 2.28 16 35 H 0.06 2.66 5.64 -2.39 -0.01 2.65 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 38 H 0.02 1.33 8.14 -2.38 -0.02 1.31 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.09 2.63 8.12 -2.39 -0.02 2.62 16 45 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 46 H 0.06 1.45 8.05 -2.38 -0.02 1.43 16 47 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.40 3.97 9.06 -74.06 -0.67 3.30 16 Total: -1.00 -66.50 396.36 1.37 -65.13 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.22 Total: 19.86 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 4.30 Total: -43.35 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -4.08 Total: -77.87 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.09 Total: -10.75 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.50 1.37 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.819 kcal (2) G-P(sol) polarization free energy of solvation -66.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds