Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38138 * 120.02715 * 264.73008 * 3 2 1 5 5 C 1.38274 * 120.05405 * 179.70348 * 4 3 2 6 6 C 1.50697 * 119.94451 * 180.27870 * 5 4 3 7 7 N 1.46902 * 109.46715 * 270.31335 * 6 5 4 8 8 C 1.46840 * 111.00147 * 45.78934 * 7 6 5 9 9 C 1.53038 * 109.52373 * 185.83877 * 8 7 6 10 10 C 1.53119 * 109.28086 * 300.82179 * 9 8 7 11 11 C 1.53119 * 109.15946 * 57.65405 * 10 9 8 12 12 H 1.09005 * 109.50147 * 62.28462 * 11 10 9 13 13 C 1.50695 * 109.53537 * 182.38586 * 11 10 9 14 14 H 1.08003 * 119.99913 * 119.82243 * 13 11 10 15 15 C 1.37872 * 120.00169 * 299.82086 * 13 11 10 16 16 N 1.31515 * 120.00153 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99977 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47363 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47230 * 120.00315 * 17 15 13 20 20 H 1.48506 * 109.46974 * 239.99826 * 17 15 13 21 21 C 1.46849 * 110.99846 * 170.00652 * 7 6 5 22 22 C 1.38272 * 120.10821 * 0.58836 * 5 4 3 23 23 C 1.38139 * 120.05337 * 359.68458 * 22 5 4 24 24 C 1.50702 * 120.02515 * 180.02562 * 23 22 5 25 25 C 1.53002 * 109.47492 * 264.97969 * 24 23 22 26 26 C 1.38730 * 120.02488 * 84.99960 * 3 2 1 27 27 O 1.35899 * 120.05838 * 359.97438 * 26 3 2 28 28 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 33 33 H 1.08003 * 119.97777 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47355 * 30.30941 * 6 5 4 35 35 H 1.08999 * 109.47139 * 150.31803 * 6 5 4 36 36 H 1.08996 * 109.46668 * 305.85672 * 8 7 6 37 37 H 1.09002 * 109.46026 * 65.82546 * 8 7 6 38 38 H 1.09006 * 109.50555 * 180.88054 * 9 8 7 39 39 H 1.09006 * 109.53561 * 60.78588 * 9 8 7 40 40 H 1.09003 * 109.52148 * 297.75014 * 10 9 8 41 41 H 1.08994 * 109.57481 * 177.59070 * 10 9 8 42 42 H 0.97000 * 120.00445 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.45844 * 294.16958 * 21 7 6 44 44 H 1.08991 * 109.46623 * 54.14111 * 21 7 6 45 45 H 1.07998 * 119.96897 * 179.70695 * 22 5 4 46 46 H 1.09000 * 109.47473 * 24.98120 * 24 23 22 47 47 H 1.09003 * 109.47075 * 144.98106 * 24 23 22 48 48 H 1.09003 * 109.46849 * 59.99999 * 25 24 23 49 49 H 1.08996 * 109.47578 * 180.02562 * 25 24 23 50 50 H 1.09000 * 109.46884 * 300.00511 * 25 24 23 51 51 H 0.96706 * 113.99802 * 89.99464 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3663 2.0360 -1.1909 5 6 2.8215 3.3417 -1.1921 6 6 3.1792 4.0124 -2.4934 7 7 4.5961 3.7700 -2.7958 8 6 4.9451 2.3591 -2.5865 9 6 6.4530 2.1726 -2.7690 10 6 6.8495 2.6117 -4.1813 11 6 6.4316 4.0699 -4.3901 12 1 6.9642 4.7059 -3.6830 13 6 6.7650 4.4931 -5.7975 14 1 5.9805 4.8230 -6.4624 15 6 8.0716 4.4591 -6.2363 16 7 9.0269 4.0570 -5.4268 17 14 8.4850 4.9844 -7.9806 18 1 7.2413 5.3900 -8.6833 19 1 9.4286 6.1303 -7.9420 20 1 9.1137 3.8496 -8.7034 21 6 4.9242 4.2014 -4.1606 22 6 2.9550 4.0308 -0.0008 23 6 2.6277 3.4181 1.1932 24 6 2.7730 4.1700 2.4912 25 6 4.1302 3.8464 3.1190 26 6 2.1650 2.1103 1.1966 27 8 1.8418 1.5056 2.3699 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.2677 1.4982 -2.1223 34 1 2.5619 3.6048 -3.2940 35 1 3.0039 5.0849 -2.4095 36 1 4.6618 2.0607 -1.5771 37 1 4.4126 1.7421 -3.3103 38 1 6.7095 1.1225 -2.6290 39 1 6.9865 2.7783 -2.0363 40 1 6.3466 1.9802 -4.9137 41 1 7.9289 2.5212 -4.3023 42 1 9.9462 4.0328 -5.7356 43 1 4.3919 3.5757 -4.8770 44 1 4.6258 5.2411 -4.2945 45 1 3.3152 5.0489 -0.0040 46 1 2.7072 5.2411 2.3000 47 1 1.9768 3.8733 3.1740 48 1 4.9263 4.1431 2.4361 49 1 4.2351 4.3898 4.0580 50 1 4.1960 2.7753 3.3101 51 1 2.5779 1.0369 2.7867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144148138.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = -46.183853 kcal Electronic energy + Delta-G solvation = -27361.648987 eV Core-core repulsion = 23838.559680 eV Total energy + Delta-G solvation = -3523.089308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42376 -38.37452 -36.65752 -35.12998 -34.13169 -32.77271 -31.60991 -29.99718 -29.19426 -29.03775 -25.58891 -24.91647 -24.20418 -23.79409 -22.07037 -21.53108 -20.45052 -19.94177 -18.57957 -18.27697 -16.48139 -16.39079 -15.70798 -15.32273 -14.97646 -14.55337 -14.23735 -14.22419 -13.96652 -13.81794 -13.47446 -13.33046 -13.06356 -12.97010 -12.81427 -12.50634 -12.33240 -12.27015 -11.91302 -11.82652 -11.60994 -11.42296 -11.35842 -11.27737 -11.03127 -10.95673 -10.86923 -10.61869 -10.56719 -10.26896 -10.06438 -9.82006 -9.45308 -9.04330 -8.68695 -8.60356 -8.39498 -8.27508 -7.60922 -5.96526 -4.02637 1.21718 1.33942 3.30219 3.38346 3.41905 3.52506 4.17567 4.42504 4.57662 4.61000 4.70818 4.77761 5.01029 5.11612 5.23670 5.25352 5.31407 5.33261 5.33947 5.41096 5.44840 5.65029 5.69634 5.74538 5.75887 5.79356 5.82738 5.88015 5.90456 5.96221 6.05532 6.11480 6.14171 6.18556 6.28879 6.40838 6.43170 6.50580 6.53201 6.68986 6.76031 6.77151 6.82915 6.98584 7.23743 7.41264 7.57348 7.68735 7.76392 7.82755 8.09899 8.18931 8.49371 9.01716 9.61660 11.09467 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.002955 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.469924 B = 9473.475505 C =10015.277723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.071 4.071 6 C 0.090 3.910 7 N -0.531 5.531 8 C 0.061 3.939 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.067 3.933 22 C -0.089 4.089 23 C -0.105 4.105 24 C -0.080 4.080 25 C -0.145 4.145 26 C 0.100 3.900 27 O -0.493 6.493 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.127 0.873 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -5.659 15.453 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.120 4.120 5 C -0.071 4.071 6 C -0.037 4.037 7 N -0.255 5.255 8 C -0.067 4.067 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.060 4.060 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.202 4.202 26 C 0.055 3.945 27 O -0.303 6.303 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.145 0.855 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.012 -5.166 15.651 21.633 hybrid contribution 0.307 -0.458 -1.516 1.613 sum -13.705 -5.624 14.136 20.476 Atomic orbital electron populations 1.21701 0.94714 1.01384 1.02225 1.20361 0.96265 0.92286 1.02416 1.20088 1.01156 0.96715 0.92690 1.20853 0.99495 0.94477 0.97189 1.19855 0.97853 0.93960 0.95425 1.21100 0.90259 1.00009 0.92344 1.62176 1.15391 1.19662 1.28294 1.22134 0.97264 0.88080 0.99241 1.21673 0.94048 0.99036 1.00712 1.21647 1.03711 0.98037 0.91426 1.18660 0.88090 0.93244 0.96338 0.94763 1.21187 0.92815 1.43664 0.97590 0.92809 1.24935 0.96451 0.95246 0.97235 1.69904 1.00243 1.47438 1.35102 0.86580 0.78358 0.78244 0.85053 1.19863 1.21049 1.21124 1.22341 1.00433 0.98392 0.84785 1.20821 0.98950 1.00320 0.90632 1.20146 1.00029 0.94530 0.95826 1.20413 0.98336 0.99367 0.93604 1.21704 0.96758 1.01262 1.00489 1.18002 1.00439 0.91141 0.84923 1.84790 1.39188 1.71324 1.34973 0.92253 0.92691 0.92821 0.91240 0.91280 0.86120 0.94579 0.90242 0.91806 0.96226 0.93736 0.92219 0.95258 0.89179 0.93138 0.96278 0.92228 0.85522 0.91114 0.90724 0.92202 0.92465 0.93115 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.08 -0.74 5.79 -27.88 -0.16 -0.90 16 3 C -0.11 -1.25 5.15 -104.47 -0.54 -1.79 16 4 C -0.10 -1.31 7.39 -39.60 -0.29 -1.60 16 5 C -0.07 -0.97 4.14 -104.60 -0.43 -1.41 16 6 C 0.09 1.37 5.43 -4.98 -0.03 1.35 16 7 N -0.53 -9.79 4.80 -236.12 -1.13 -10.92 16 8 C 0.06 1.09 4.57 -3.84 -0.02 1.07 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.62 5.03 -26.61 -0.13 -2.76 16 11 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 12 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 16 N -0.89 -25.36 11.36 55.43 0.63 -24.73 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.07 1.43 4.65 -3.83 -0.02 1.41 16 22 C -0.09 -1.15 9.33 -39.61 -0.37 -1.52 16 23 C -0.10 -1.24 5.15 -104.47 -0.54 -1.78 16 24 C -0.08 -0.78 5.79 -27.88 -0.16 -0.94 16 25 C -0.14 -1.28 9.90 37.16 0.37 -0.91 16 26 C 0.10 1.15 6.65 -39.22 -0.26 0.89 16 27 O -0.49 -4.83 11.78 -19.42 -0.23 -5.06 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 7.69 -51.93 -0.40 0.21 16 32 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 35 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.06 1.06 5.63 -51.93 -0.29 0.77 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 45 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 47 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.38 2.32 9.06 45.56 0.41 2.73 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -29.31 396.30 -11.31 -40.62 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.55 Total: 1.78 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.97 Total: -23.89 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.50 Total: -35.65 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.23 Total: -5.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.31 -11.31 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148138.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds