Wall clock time and date at job start Tue Mar 31 2020 12:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38138 * 120.02715 * 264.73008 * 3 2 1 5 5 C 1.38274 * 120.05405 * 179.70348 * 4 3 2 6 6 C 1.50697 * 119.94451 * 180.27870 * 5 4 3 7 7 N 1.46902 * 109.46715 * 270.31335 * 6 5 4 8 8 C 1.46840 * 111.00147 * 45.78934 * 7 6 5 9 9 C 1.53038 * 109.52373 * 185.83877 * 8 7 6 10 10 C 1.53119 * 109.28086 * 300.82179 * 9 8 7 11 11 C 1.53119 * 109.15946 * 57.65405 * 10 9 8 12 12 H 1.09005 * 109.50147 * 62.28462 * 11 10 9 13 13 C 1.50695 * 109.53537 * 182.38586 * 11 10 9 14 14 H 1.08003 * 119.99913 * 119.82243 * 13 11 10 15 15 C 1.37872 * 120.00169 * 299.82086 * 13 11 10 16 16 N 1.31515 * 120.00153 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99977 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47363 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47230 * 120.00315 * 17 15 13 20 20 H 1.48506 * 109.46974 * 239.99826 * 17 15 13 21 21 C 1.46849 * 110.99846 * 170.00652 * 7 6 5 22 22 C 1.38272 * 120.10821 * 0.58836 * 5 4 3 23 23 C 1.38139 * 120.05337 * 359.68458 * 22 5 4 24 24 C 1.50702 * 120.02515 * 180.02562 * 23 22 5 25 25 C 1.53002 * 109.47492 * 264.97969 * 24 23 22 26 26 C 1.38730 * 120.02488 * 84.99960 * 3 2 1 27 27 O 1.35899 * 120.05838 * 359.97438 * 26 3 2 28 28 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 33 33 H 1.08003 * 119.97777 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47355 * 30.30941 * 6 5 4 35 35 H 1.08999 * 109.47139 * 150.31803 * 6 5 4 36 36 H 1.08996 * 109.46668 * 305.85672 * 8 7 6 37 37 H 1.09002 * 109.46026 * 65.82546 * 8 7 6 38 38 H 1.09006 * 109.50555 * 180.88054 * 9 8 7 39 39 H 1.09006 * 109.53561 * 60.78588 * 9 8 7 40 40 H 1.09003 * 109.52148 * 297.75014 * 10 9 8 41 41 H 1.08994 * 109.57481 * 177.59070 * 10 9 8 42 42 H 0.97000 * 120.00445 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.45844 * 294.16958 * 21 7 6 44 44 H 1.08991 * 109.46623 * 54.14111 * 21 7 6 45 45 H 1.07998 * 119.96897 * 179.70695 * 22 5 4 46 46 H 1.09000 * 109.47473 * 24.98120 * 24 23 22 47 47 H 1.09003 * 109.47075 * 144.98106 * 24 23 22 48 48 H 1.09003 * 109.46849 * 59.99999 * 25 24 23 49 49 H 1.08996 * 109.47578 * 180.02562 * 25 24 23 50 50 H 1.09000 * 109.46884 * 300.00511 * 25 24 23 51 51 H 0.96706 * 113.99802 * 89.99464 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3663 2.0360 -1.1909 5 6 2.8215 3.3417 -1.1921 6 6 3.1792 4.0124 -2.4934 7 7 4.5961 3.7700 -2.7958 8 6 4.9451 2.3591 -2.5865 9 6 6.4530 2.1726 -2.7690 10 6 6.8495 2.6117 -4.1813 11 6 6.4316 4.0699 -4.3901 12 1 6.9642 4.7059 -3.6830 13 6 6.7650 4.4931 -5.7975 14 1 5.9805 4.8230 -6.4624 15 6 8.0716 4.4591 -6.2363 16 7 9.0269 4.0570 -5.4268 17 14 8.4850 4.9844 -7.9806 18 1 7.2413 5.3900 -8.6833 19 1 9.4286 6.1303 -7.9420 20 1 9.1137 3.8496 -8.7034 21 6 4.9242 4.2014 -4.1606 22 6 2.9550 4.0308 -0.0008 23 6 2.6277 3.4181 1.1932 24 6 2.7730 4.1700 2.4912 25 6 4.1302 3.8464 3.1190 26 6 2.1650 2.1103 1.1966 27 8 1.8418 1.5056 2.3699 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.2677 1.4982 -2.1223 34 1 2.5619 3.6048 -3.2940 35 1 3.0039 5.0849 -2.4095 36 1 4.6618 2.0607 -1.5771 37 1 4.4126 1.7421 -3.3103 38 1 6.7095 1.1225 -2.6290 39 1 6.9865 2.7783 -2.0363 40 1 6.3466 1.9802 -4.9137 41 1 7.9289 2.5212 -4.3023 42 1 9.9462 4.0328 -5.7356 43 1 4.3919 3.5757 -4.8770 44 1 4.6258 5.2411 -4.2945 45 1 3.3152 5.0489 -0.0040 46 1 2.7072 5.2411 2.3000 47 1 1.9768 3.8733 3.1740 48 1 4.9263 4.1431 2.4361 49 1 4.2351 4.3898 4.0580 50 1 4.1960 2.7753 3.3101 51 1 2.5779 1.0369 2.7867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144148138.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:15 Heat of formation + Delta-G solvation = -62.044144 kcal Electronic energy + Delta-G solvation = -27362.336741 eV Core-core repulsion = 23838.559680 eV Total energy + Delta-G solvation = -3523.777062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37172 -39.80937 -37.70106 -35.93017 -35.67426 -34.16001 -33.02680 -31.70982 -30.29862 -29.98625 -26.95729 -26.78761 -25.06233 -24.58758 -23.61261 -23.17458 -21.29543 -21.07711 -20.30884 -19.12864 -18.42381 -17.39294 -16.90118 -16.62880 -16.33893 -16.05253 -15.46611 -15.16456 -15.03742 -14.88610 -14.80690 -14.47801 -14.40424 -14.28289 -13.89242 -13.79806 -13.56162 -13.45935 -13.23572 -12.91644 -12.86983 -12.75056 -12.59659 -12.52460 -12.34430 -12.24389 -12.12430 -11.80377 -11.75745 -11.72827 -11.65838 -11.37011 -11.09065 -10.86904 -10.65931 -10.38005 -9.53382 -9.39670 -9.03346 -8.07773 -6.21882 0.27485 0.40781 1.40286 1.42076 1.53365 2.42403 2.57352 3.19258 3.25821 3.38054 3.74031 3.76677 3.77682 4.18183 4.20770 4.27605 4.28274 4.36409 4.39245 4.47458 4.49691 4.51288 4.56891 4.59186 4.65412 4.71859 4.73528 4.81099 4.88670 4.97031 4.99038 5.03015 5.04599 5.09862 5.11233 5.15611 5.17832 5.21525 5.37590 5.38697 5.41170 5.50596 5.54509 5.60729 5.63894 5.71584 5.93176 5.97152 6.12518 6.20886 6.32450 6.46070 6.88487 6.90932 7.46039 8.97122 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.002955 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.469924 B = 9473.475505 C =10015.277723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.110 4.110 4 C -0.108 4.108 5 C -0.085 4.085 6 C 0.094 3.906 7 N -0.540 5.540 8 C 0.071 3.929 9 C -0.110 4.110 10 C -0.102 4.102 11 C 0.054 3.946 12 H -0.003 1.003 13 C -0.535 4.535 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.081 3.919 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.077 4.077 25 C -0.142 4.142 26 C 0.104 3.896 27 O -0.495 6.495 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.016 0.984 44 H 0.059 0.941 45 H 0.126 0.874 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.253 -6.619 16.445 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.127 4.127 5 C -0.085 4.085 6 C -0.033 4.033 7 N -0.264 5.264 8 C -0.057 4.057 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.035 3.965 12 H 0.015 0.985 13 C -0.574 4.574 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.046 4.046 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.199 4.199 26 C 0.059 3.941 27 O -0.307 6.307 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.144 0.856 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -15.348 -6.133 16.661 23.469 hybrid contribution 0.697 -0.174 -1.721 1.865 sum -14.651 -6.307 14.940 21.855 Atomic orbital electron populations 1.21665 0.94325 1.02204 1.01460 1.20418 0.96508 0.91113 1.03248 1.20318 1.00661 0.97699 0.92349 1.20915 0.99791 0.94178 0.97826 1.19727 0.99476 0.94556 0.94761 1.21085 0.88040 1.00664 0.93465 1.62076 1.18046 1.20118 1.26194 1.22044 0.95428 0.87850 1.00378 1.21589 0.95650 1.00005 0.97566 1.21450 1.01465 0.97296 0.93848 1.18576 0.90403 0.93153 0.94376 0.98525 1.21546 0.93129 1.43904 0.98772 0.93003 1.25722 0.96379 0.95266 1.01151 1.70045 1.00496 1.48093 1.36850 0.85563 0.78209 0.77880 0.80334 1.19141 1.20651 1.20638 1.22008 0.97594 0.98500 0.86521 1.20904 0.99378 1.00486 0.90972 1.20370 0.99577 0.94897 0.96210 1.20430 0.98943 0.99328 0.92728 1.21685 0.95605 1.01998 1.00658 1.18073 0.99389 0.91094 0.85526 1.84743 1.40286 1.71399 1.34261 0.93121 0.91115 0.93437 0.90023 0.90845 0.85933 0.94179 0.89765 0.89920 0.95839 0.91513 0.93398 0.95900 0.92410 0.93089 0.96542 0.92280 0.85582 0.90855 0.90221 0.93699 0.91065 0.92325 0.74120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 71.98 0.71 -1.55 16 2 C -0.08 -1.29 5.79 29.85 0.17 -1.12 16 3 C -0.11 -2.36 5.15 -19.77 -0.10 -2.46 16 4 C -0.11 -2.63 7.39 22.25 0.16 -2.46 16 5 C -0.08 -2.24 4.14 -19.85 -0.08 -2.33 16 6 C 0.09 2.80 5.43 85.56 0.46 3.27 16 7 N -0.54 -19.78 4.80 -900.94 -4.32 -24.10 16 8 C 0.07 2.46 4.57 86.33 0.39 2.85 16 9 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 10 C -0.10 -5.00 5.03 30.67 0.15 -4.84 16 11 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16 12 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 13 C -0.53 -29.99 8.56 25.60 0.22 -29.77 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.76 5.31 84.65 0.45 1.21 16 16 N -0.92 -53.64 11.36 21.45 0.24 -53.40 16 17 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 C 0.08 3.49 4.65 86.33 0.40 3.89 16 22 C -0.10 -2.47 9.33 22.25 0.21 -2.26 16 23 C -0.11 -2.42 5.15 -19.77 -0.10 -2.52 16 24 C -0.08 -1.36 5.79 29.85 0.17 -1.18 16 25 C -0.14 -2.25 9.90 71.98 0.71 -1.54 16 26 C 0.10 2.18 6.65 22.51 0.15 2.33 16 27 O -0.49 -8.29 11.78 -92.42 -1.09 -9.38 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.08 1.19 7.69 -2.39 -0.02 1.17 16 32 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 33 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.04 1.16 8.02 -2.39 -0.02 1.14 16 35 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 36 H 0.08 2.61 5.63 -2.39 -0.01 2.60 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 3.19 6.16 -2.39 -0.01 3.17 16 42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16 45 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 47 H 0.08 1.34 7.69 -2.39 -0.02 1.32 16 48 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.40 3.57 9.06 -74.05 -0.67 2.90 16 Total: -1.00 -63.57 396.30 1.32 -62.25 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.22 Total: 18.49 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 4.25 Total: -39.93 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -4.08 Total: -77.50 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.09 Total: -9.38 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.57 1.32 -62.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148138.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.203 kcal (2) G-P(sol) polarization free energy of solvation -63.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds