Wall clock time and date at job start Tue Mar 31 2020 12:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47339 * 2 1 4 4 C 1.38143 * 120.02567 * 265.00656 * 3 2 1 5 5 C 1.38271 * 120.05103 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.93987 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47333 * 89.99594 * 6 5 4 8 8 C 1.46848 * 110.99938 * 314.20763 * 7 6 5 9 9 C 1.53048 * 109.57298 * 174.18963 * 8 7 6 10 10 C 1.53120 * 109.27450 * 59.08726 * 9 8 7 11 11 C 1.53123 * 109.21163 * 302.43753 * 10 9 8 12 12 H 1.09001 * 109.49925 * 297.68290 * 11 10 9 13 13 C 1.50697 * 109.50437 * 177.60152 * 11 10 9 14 14 H 1.07995 * 119.99971 * 240.00356 * 13 11 10 15 15 C 1.37882 * 119.99689 * 59.99803 * 13 11 10 16 16 N 1.31511 * 119.99940 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99658 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.46848 * 60.00542 * 17 15 13 19 19 H 1.48505 * 109.46575 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47111 * 300.00120 * 17 15 13 21 21 C 1.46842 * 111.00192 * 189.99834 * 7 6 5 22 22 C 1.38262 * 120.11306 * 0.26523 * 5 4 3 23 23 C 1.38142 * 120.05389 * 359.45720 * 22 5 4 24 24 C 1.50700 * 120.02753 * 180.27291 * 23 22 5 25 25 C 1.53005 * 109.46909 * 265.27386 * 24 23 22 26 26 C 1.38731 * 119.94660 * 0.54754 * 23 22 5 27 27 O 1.35903 * 120.06058 * 179.74883 * 26 23 22 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46965 * 299.99482 * 1 2 3 30 30 H 1.08993 * 109.47333 * 59.99795 * 1 2 3 31 31 H 1.09004 * 109.46457 * 239.99992 * 2 1 3 32 32 H 1.09006 * 109.47209 * 120.00495 * 2 1 3 33 33 H 1.07996 * 119.97712 * 0.03319 * 4 3 2 34 34 H 1.08997 * 109.46764 * 329.99191 * 6 5 4 35 35 H 1.09003 * 109.46690 * 209.99681 * 6 5 4 36 36 H 1.08999 * 109.46555 * 294.17605 * 8 7 6 37 37 H 1.09000 * 109.46248 * 54.14574 * 8 7 6 38 38 H 1.09000 * 109.45669 * 299.17222 * 9 8 7 39 39 H 1.09003 * 109.55501 * 179.05467 * 9 8 7 40 40 H 1.09002 * 109.52427 * 182.50027 * 10 9 8 41 41 H 1.08995 * 109.52208 * 62.37346 * 10 9 8 42 42 H 0.97009 * 119.99996 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.46203 * 65.82095 * 21 7 6 44 44 H 1.09006 * 109.45199 * 305.85056 * 21 7 6 45 45 H 1.08005 * 119.97046 * 179.72963 * 22 5 4 46 46 H 1.09002 * 109.47251 * 25.26992 * 24 23 22 47 47 H 1.08994 * 109.47261 * 145.27841 * 24 23 22 48 48 H 1.08997 * 109.47122 * 299.99466 * 25 24 23 49 49 H 1.08997 * 109.47255 * 59.99955 * 25 24 23 50 50 H 1.09004 * 109.46900 * 179.97438 * 25 24 23 51 51 H 0.96695 * 113.99677 * 269.97936 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0378 -1.1915 5 6 2.8225 3.3412 -1.1921 6 6 3.1808 4.0117 -2.4933 7 7 1.9967 4.6899 -3.0371 8 6 0.8151 3.8206 -2.9698 9 6 -0.4241 4.6049 -3.4076 10 6 -0.2210 5.1140 -4.8373 11 6 1.0428 5.9770 -4.8902 12 1 0.9172 6.8459 -4.2441 13 6 1.2816 6.4333 -6.3064 14 1 2.1965 6.1644 -6.8133 15 6 0.3319 7.1939 -6.9550 16 7 -0.7820 7.5216 -6.3376 17 14 0.6283 7.7601 -8.7104 18 1 0.8015 6.5761 -9.5897 19 1 -0.5346 8.5575 -9.1762 20 1 1.8539 8.5973 -8.7602 21 6 2.2386 5.1516 -4.4098 22 6 2.9615 4.0284 -0.0004 23 6 2.6288 3.4177 1.1932 24 6 2.7747 4.1694 2.4912 25 6 4.1323 3.8454 3.1183 26 6 2.1656 2.1100 1.1966 27 8 1.8425 1.5053 2.3700 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.2572 1.5018 -2.1233 34 1 3.5289 3.2624 -3.2043 35 1 3.9706 4.7427 -2.3200 36 1 0.9550 2.9656 -3.6311 37 1 0.6801 3.4698 -1.9466 38 1 -0.5734 5.4516 -2.7375 39 1 -1.2983 3.9547 -3.3736 40 1 -1.0824 5.7107 -5.1374 41 1 -0.1117 4.2663 -5.5137 42 1 -1.4503 8.0564 -6.7941 43 1 2.3720 4.2904 -5.0645 44 1 3.1376 5.7677 -4.4325 45 1 3.3263 5.0449 -0.0031 46 1 2.7091 5.2405 2.3002 47 1 1.9789 3.8726 3.1744 48 1 4.1979 2.7743 3.3094 49 1 4.9281 4.1420 2.4352 50 1 4.2380 4.3894 4.0570 51 1 2.5785 1.0364 2.7865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144148139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:18 Heat of formation + Delta-G solvation = -45.806663 kcal Electronic energy + Delta-G solvation = -27373.538661 eV Core-core repulsion = 23850.465710 eV Total energy + Delta-G solvation = -3523.072952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42587 -38.36401 -36.66043 -35.13443 -34.12424 -32.77328 -31.59282 -29.98755 -29.17001 -29.05442 -25.58384 -24.91009 -24.19972 -23.80069 -22.05385 -21.50648 -20.45482 -19.94620 -18.56272 -18.28583 -16.48231 -16.38974 -15.69811 -15.19962 -15.07025 -14.55166 -14.29828 -14.22081 -13.95082 -13.78591 -13.45410 -13.32068 -13.05377 -12.99540 -12.80678 -12.48127 -12.39985 -12.17781 -11.91761 -11.81808 -11.59889 -11.42958 -11.38885 -11.23378 -11.02590 -10.91175 -10.89268 -10.61849 -10.58322 -10.27114 -10.05480 -9.79821 -9.43246 -9.02716 -8.68480 -8.60272 -8.39407 -8.25749 -7.59684 -5.94883 -4.01299 1.21645 1.33734 3.33449 3.38221 3.40369 3.53072 4.14960 4.43514 4.57705 4.61910 4.69934 4.78171 4.99940 5.10972 5.19177 5.26744 5.30468 5.34461 5.35186 5.41949 5.44671 5.64138 5.69817 5.74676 5.76047 5.80714 5.83365 5.89371 5.91205 5.95087 6.03934 6.13550 6.16339 6.20404 6.31193 6.41615 6.43885 6.50546 6.55010 6.69339 6.78306 6.79200 6.83124 7.00210 7.25879 7.43133 7.56977 7.70360 7.77316 7.84258 8.11505 8.20779 8.50659 9.02608 9.62740 11.10946 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002965 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.406078 B = 9440.309355 C =10092.244180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.106 4.106 4 C -0.102 4.102 5 C -0.070 4.070 6 C 0.091 3.909 7 N -0.531 5.531 8 C 0.061 3.939 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.056 3.944 12 H 0.034 0.966 13 C -0.516 4.516 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.067 3.933 22 C -0.089 4.089 23 C -0.104 4.104 24 C -0.082 4.082 25 C -0.143 4.143 26 C 0.099 3.901 27 O -0.492 6.492 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.019 0.981 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.127 0.873 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -13.220 17.432 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.106 4.106 4 C -0.121 4.121 5 C -0.071 4.071 6 C -0.037 4.037 7 N -0.255 5.255 8 C -0.067 4.067 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.052 0.948 13 C -0.554 4.554 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.059 4.059 22 C -0.108 4.108 23 C -0.105 4.105 24 C -0.119 4.119 25 C -0.200 4.200 26 C 0.055 3.945 27 O -0.301 6.301 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.145 0.855 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.665 -12.464 17.566 22.546 hybrid contribution 0.703 -0.603 -1.482 1.748 sum 7.368 -13.067 16.084 21.994 Atomic orbital electron populations 1.21712 0.94513 1.01425 1.02566 1.20354 0.96499 0.92182 1.02144 1.20099 1.01099 0.96784 0.92663 1.20852 0.99448 0.94690 0.97068 1.19856 0.98358 0.93617 0.95239 1.21091 0.94363 0.96461 0.91766 1.62166 1.02109 1.37884 1.23370 1.22135 0.91451 0.93762 0.99366 1.21676 0.94760 0.98954 1.00112 1.21650 1.03151 0.98441 0.91577 1.18648 0.88908 0.93341 0.95370 0.94777 1.21111 1.03483 1.32441 0.98405 0.92920 1.24933 0.95196 0.95909 0.97778 1.69885 1.07960 1.37893 1.36925 0.86693 0.77611 0.78724 0.85148 1.20408 1.21325 1.20307 1.22339 1.01084 0.97759 0.84745 1.20822 0.99608 0.99678 0.90652 1.20136 1.00036 0.94468 0.95839 1.20424 0.98211 0.99609 0.93662 1.21695 0.96727 1.01176 1.00429 1.18010 1.00437 0.91171 0.84914 1.84820 1.39011 1.71276 1.34966 0.92698 0.92184 0.92521 0.91421 0.91366 0.86118 0.94605 0.90269 0.96247 0.91760 0.92210 0.93693 0.89156 0.95271 0.93013 0.96286 0.92249 0.85524 0.90924 0.90570 0.93159 0.92576 0.92432 0.76528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.90 37.16 0.37 -1.10 16 2 C -0.07 -0.73 5.79 -27.88 -0.16 -0.89 16 3 C -0.11 -1.25 5.15 -104.47 -0.54 -1.79 16 4 C -0.10 -1.32 7.42 -39.60 -0.29 -1.61 16 5 C -0.07 -0.97 4.13 -104.60 -0.43 -1.40 16 6 C 0.09 1.38 5.43 -4.98 -0.03 1.35 16 7 N -0.53 -9.94 4.80 -236.11 -1.13 -11.07 16 8 C 0.06 1.11 4.57 -3.83 -0.02 1.10 16 9 C -0.12 -2.40 6.10 -26.64 -0.16 -2.56 16 10 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 11 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 12 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.52 -14.22 8.57 -34.44 -0.30 -14.51 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.54 11.35 55.43 0.63 -24.91 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.07 1.44 4.65 -3.84 -0.02 1.42 16 22 C -0.09 -1.16 9.33 -39.61 -0.37 -1.53 16 23 C -0.10 -1.23 5.15 -104.47 -0.54 -1.77 16 24 C -0.08 -0.79 5.79 -27.88 -0.16 -0.96 16 25 C -0.14 -1.11 9.89 37.16 0.37 -0.74 16 26 C 0.10 1.15 6.65 -39.22 -0.26 0.89 16 27 O -0.49 -4.82 11.78 -19.43 -0.23 -5.05 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.07 0.58 7.69 -51.93 -0.40 0.18 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.04 0.53 8.02 -51.93 -0.42 0.12 16 35 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.12 5.64 -51.93 -0.29 0.83 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 45 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 47 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.38 2.12 9.06 45.56 0.41 2.53 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -29.65 396.31 -11.31 -40.96 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.55 Total: 1.77 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.97 Total: -24.01 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.50 Total: -35.98 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.23 Total: -5.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.65 -11.31 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.848 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds