Wall clock time and date at job start Tue Mar 31 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47339 * 2 1 4 4 C 1.38143 * 120.02567 * 265.00656 * 3 2 1 5 5 C 1.38271 * 120.05103 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.93987 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47333 * 89.99594 * 6 5 4 8 8 C 1.46848 * 110.99938 * 314.20763 * 7 6 5 9 9 C 1.53048 * 109.57298 * 174.18963 * 8 7 6 10 10 C 1.53120 * 109.27450 * 59.08726 * 9 8 7 11 11 C 1.53123 * 109.21163 * 302.43753 * 10 9 8 12 12 H 1.09001 * 109.49925 * 297.68290 * 11 10 9 13 13 C 1.50697 * 109.50437 * 177.60152 * 11 10 9 14 14 H 1.07995 * 119.99971 * 240.00356 * 13 11 10 15 15 C 1.37882 * 119.99689 * 59.99803 * 13 11 10 16 16 N 1.31511 * 119.99940 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99658 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.46848 * 60.00542 * 17 15 13 19 19 H 1.48505 * 109.46575 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47111 * 300.00120 * 17 15 13 21 21 C 1.46842 * 111.00192 * 189.99834 * 7 6 5 22 22 C 1.38262 * 120.11306 * 0.26523 * 5 4 3 23 23 C 1.38142 * 120.05389 * 359.45720 * 22 5 4 24 24 C 1.50700 * 120.02753 * 180.27291 * 23 22 5 25 25 C 1.53005 * 109.46909 * 265.27386 * 24 23 22 26 26 C 1.38731 * 119.94660 * 0.54754 * 23 22 5 27 27 O 1.35903 * 120.06058 * 179.74883 * 26 23 22 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46965 * 299.99482 * 1 2 3 30 30 H 1.08993 * 109.47333 * 59.99795 * 1 2 3 31 31 H 1.09004 * 109.46457 * 239.99992 * 2 1 3 32 32 H 1.09006 * 109.47209 * 120.00495 * 2 1 3 33 33 H 1.07996 * 119.97712 * 0.03319 * 4 3 2 34 34 H 1.08997 * 109.46764 * 329.99191 * 6 5 4 35 35 H 1.09003 * 109.46690 * 209.99681 * 6 5 4 36 36 H 1.08999 * 109.46555 * 294.17605 * 8 7 6 37 37 H 1.09000 * 109.46248 * 54.14574 * 8 7 6 38 38 H 1.09000 * 109.45669 * 299.17222 * 9 8 7 39 39 H 1.09003 * 109.55501 * 179.05467 * 9 8 7 40 40 H 1.09002 * 109.52427 * 182.50027 * 10 9 8 41 41 H 1.08995 * 109.52208 * 62.37346 * 10 9 8 42 42 H 0.97009 * 119.99996 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.46203 * 65.82095 * 21 7 6 44 44 H 1.09006 * 109.45199 * 305.85056 * 21 7 6 45 45 H 1.08005 * 119.97046 * 179.72963 * 22 5 4 46 46 H 1.09002 * 109.47251 * 25.26992 * 24 23 22 47 47 H 1.08994 * 109.47261 * 145.27841 * 24 23 22 48 48 H 1.08997 * 109.47122 * 299.99466 * 25 24 23 49 49 H 1.08997 * 109.47255 * 59.99955 * 25 24 23 50 50 H 1.09004 * 109.46900 * 179.97438 * 25 24 23 51 51 H 0.96695 * 113.99677 * 269.97936 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0378 -1.1915 5 6 2.8225 3.3412 -1.1921 6 6 3.1808 4.0117 -2.4933 7 7 1.9967 4.6899 -3.0371 8 6 0.8151 3.8206 -2.9698 9 6 -0.4241 4.6049 -3.4076 10 6 -0.2210 5.1140 -4.8373 11 6 1.0428 5.9770 -4.8902 12 1 0.9172 6.8459 -4.2441 13 6 1.2816 6.4333 -6.3064 14 1 2.1965 6.1644 -6.8133 15 6 0.3319 7.1939 -6.9550 16 7 -0.7820 7.5216 -6.3376 17 14 0.6283 7.7601 -8.7104 18 1 0.8015 6.5761 -9.5897 19 1 -0.5346 8.5575 -9.1762 20 1 1.8539 8.5973 -8.7602 21 6 2.2386 5.1516 -4.4098 22 6 2.9615 4.0284 -0.0004 23 6 2.6288 3.4177 1.1932 24 6 2.7747 4.1694 2.4912 25 6 4.1323 3.8454 3.1183 26 6 2.1656 2.1100 1.1966 27 8 1.8425 1.5053 2.3700 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.2572 1.5018 -2.1233 34 1 3.5289 3.2624 -3.2043 35 1 3.9706 4.7427 -2.3200 36 1 0.9550 2.9656 -3.6311 37 1 0.6801 3.4698 -1.9466 38 1 -0.5734 5.4516 -2.7375 39 1 -1.2983 3.9547 -3.3736 40 1 -1.0824 5.7107 -5.1374 41 1 -0.1117 4.2663 -5.5137 42 1 -1.4503 8.0564 -6.7941 43 1 2.3720 4.2904 -5.0645 44 1 3.1376 5.7677 -4.4325 45 1 3.3263 5.0449 -0.0031 46 1 2.7091 5.2405 2.3002 47 1 1.9789 3.8726 3.1744 48 1 4.1979 2.7743 3.3094 49 1 4.9281 4.1420 2.4352 50 1 4.2380 4.3894 4.0570 51 1 2.5785 1.0364 2.7865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144148139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:17 Heat of formation + Delta-G solvation = -62.046981 kcal Electronic energy + Delta-G solvation = -27374.242894 eV Core-core repulsion = 23850.465710 eV Total energy + Delta-G solvation = -3523.777185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37319 -39.81566 -37.70793 -35.93287 -35.67700 -34.16539 -33.02863 -31.71848 -30.29960 -29.98198 -26.96531 -26.78840 -25.06613 -24.58874 -23.61599 -23.17295 -21.29504 -21.08552 -20.31998 -19.13772 -18.42154 -17.39709 -16.93036 -16.49576 -16.41207 -16.09216 -15.47870 -15.16172 -15.02988 -14.90692 -14.81783 -14.47571 -14.33950 -14.26433 -14.05526 -13.73314 -13.56087 -13.46902 -13.14748 -12.91260 -12.85264 -12.76965 -12.61119 -12.56145 -12.37476 -12.22194 -12.12870 -11.80728 -11.76623 -11.74988 -11.64201 -11.37651 -11.09107 -10.87803 -10.67306 -10.37833 -9.53318 -9.39574 -9.03631 -8.07418 -6.22021 0.27706 0.40618 1.41803 1.43280 1.50865 2.42535 2.57907 3.19324 3.26015 3.36160 3.73969 3.76541 3.77834 4.17123 4.19793 4.27603 4.27931 4.36140 4.39071 4.46616 4.49700 4.51392 4.56325 4.59106 4.66209 4.71376 4.73365 4.80863 4.87452 4.96155 4.98960 5.02869 5.04405 5.08901 5.11659 5.15858 5.17088 5.21615 5.36245 5.38932 5.41479 5.49982 5.54349 5.60740 5.63177 5.71577 5.93579 5.96887 6.11843 6.20441 6.32093 6.45514 6.90394 6.90623 7.45849 8.97085 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002965 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.406078 B = 9440.309355 C =10092.244180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.110 4.110 4 C -0.109 4.109 5 C -0.085 4.085 6 C 0.094 3.906 7 N -0.541 5.541 8 C 0.072 3.928 9 C -0.111 4.111 10 C -0.102 4.102 11 C 0.054 3.946 12 H -0.004 1.004 13 C -0.537 4.537 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.082 3.918 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.080 4.080 25 C -0.139 4.139 26 C 0.104 3.896 27 O -0.495 6.495 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.126 0.874 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -14.939 18.506 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.085 4.085 6 C -0.032 4.032 7 N -0.266 5.266 8 C -0.056 4.056 9 C -0.149 4.149 10 C -0.140 4.140 11 C 0.035 3.965 12 H 0.014 0.986 13 C -0.576 4.576 14 H 0.071 0.929 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.046 4.046 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.196 4.196 26 C 0.059 3.941 27 O -0.307 6.307 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.616 -14.202 18.660 24.656 hybrid contribution 0.404 -0.091 -1.703 1.753 sum 8.020 -14.293 16.957 23.583 Atomic orbital electron populations 1.21686 0.94826 1.02177 1.01305 1.20404 0.96076 0.91118 1.03409 1.20328 1.00647 0.97786 0.92316 1.20917 0.99667 0.94421 0.97720 1.19729 1.00043 0.94194 0.94576 1.21085 0.92903 0.96664 0.92582 1.62064 1.03762 1.39250 1.21500 1.22018 0.90218 0.93199 1.00156 1.21597 0.96980 0.99112 0.97229 1.21450 1.01274 0.97441 0.93839 1.18568 0.91222 0.92804 0.93887 0.98619 1.21496 1.03593 1.32825 0.99657 0.92867 1.25740 0.94927 0.96015 1.01858 1.70039 1.08672 1.38330 1.38487 0.85662 0.77640 0.78420 0.80223 1.19638 1.21000 1.19570 1.22006 0.99130 0.97112 0.86325 1.20902 1.00068 0.99801 0.90999 1.20364 0.99628 0.94848 0.96223 1.20442 0.99356 0.99163 0.92767 1.21668 0.95207 1.02062 1.00653 1.18079 0.99318 0.91123 0.85532 1.84768 1.40290 1.71387 1.34269 0.90997 0.93320 0.93831 0.90577 0.89707 0.85918 0.94017 0.89633 0.95765 0.90267 0.93537 0.91663 0.92393 0.95861 0.93077 0.96442 0.92137 0.85593 0.91266 0.90652 0.92115 0.93015 0.91230 0.74068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.90 71.98 0.71 -1.89 16 2 C -0.07 -1.24 5.79 29.85 0.17 -1.06 16 3 C -0.11 -2.37 5.15 -19.77 -0.10 -2.47 16 4 C -0.11 -2.64 7.42 22.25 0.17 -2.47 16 5 C -0.09 -2.25 4.13 -19.85 -0.08 -2.33 16 6 C 0.09 2.80 5.43 85.56 0.46 3.26 16 7 N -0.54 -20.15 4.80 -900.91 -4.33 -24.48 16 8 C 0.07 2.58 4.57 86.33 0.39 2.98 16 9 C -0.11 -4.58 6.10 30.65 0.19 -4.39 16 10 C -0.10 -5.06 5.02 30.68 0.15 -4.90 16 11 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 12 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 13 C -0.54 -30.26 8.57 25.60 0.22 -30.04 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -54.18 11.35 21.45 0.24 -53.94 16 17 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.08 3.53 4.65 86.33 0.40 3.93 16 22 C -0.10 -2.48 9.33 22.25 0.21 -2.27 16 23 C -0.11 -2.43 5.15 -19.77 -0.10 -2.53 16 24 C -0.08 -1.43 5.79 29.85 0.17 -1.25 16 25 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 26 C 0.10 2.19 6.65 22.51 0.15 2.34 16 27 O -0.50 -8.31 11.78 -92.45 -1.09 -9.40 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.18 8.05 -2.38 -0.02 1.16 16 32 H 0.08 1.16 7.69 -2.38 -0.02 1.14 16 33 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.04 1.19 8.02 -2.39 -0.02 1.17 16 35 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 2.66 5.64 -2.39 -0.01 2.64 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 2.56 8.12 -2.38 -0.02 2.54 16 45 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 47 H 0.07 1.36 7.69 -2.39 -0.02 1.34 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.40 3.12 9.06 -74.06 -0.67 2.45 16 Total: -1.00 -64.55 396.31 1.32 -63.23 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.22 Total: 18.64 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 4.25 Total: -40.26 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -4.08 Total: -78.42 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.09 Total: -9.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.55 1.32 -63.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.178 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds