Wall clock time and date at job start Tue Mar 31 2020 11:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.00162 * 2 1 4 4 C 1.38217 * 120.00091 * 179.74858 * 3 2 1 5 5 C 1.38251 * 119.99569 * 0.54860 * 4 3 2 6 6 C 1.38216 * 120.00502 * 359.70101 * 5 4 3 7 7 C 1.38211 * 119.99981 * 180.27703 * 2 1 3 8 8 C 1.50702 * 120.00079 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47261 * 353.93002 * 8 7 2 10 10 C 1.53002 * 109.47373 * 233.93076 * 8 7 2 11 11 C 1.50696 * 109.47315 * 113.92976 * 8 7 2 12 12 O 1.21280 * 119.99902 * 18.57813 * 11 8 7 13 13 N 1.34781 * 120.00101 * 198.58006 * 11 8 7 14 14 C 1.46499 * 120.00048 * 2.60316 * 13 11 8 15 15 C 1.50696 * 109.47030 * 84.25271 * 14 13 11 16 16 H 1.08003 * 120.00126 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99752 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00447 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47238 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47478 * 120.00211 * 19 17 15 22 22 H 1.48503 * 109.47004 * 240.00255 * 19 17 15 23 23 C 1.46502 * 119.99922 * 182.60689 * 13 11 8 24 24 C 1.53000 * 109.47298 * 89.99604 * 23 13 11 25 25 C 1.52997 * 109.47230 * 179.97438 * 24 23 13 26 26 C 1.53004 * 109.47052 * 175.00216 * 25 24 23 27 27 C 1.52998 * 109.47107 * 295.00266 * 25 24 23 28 28 H 1.09005 * 109.47193 * 263.44621 * 1 2 3 29 29 H 1.09003 * 109.47334 * 143.44825 * 1 2 3 30 30 H 1.08995 * 109.47124 * 23.44158 * 1 2 3 31 31 H 1.08006 * 120.00097 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99971 * 180.27294 * 4 3 2 33 33 H 1.08002 * 119.99773 * 179.72912 * 5 4 3 34 34 H 1.07994 * 120.00422 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.46731 * 295.83389 * 10 8 7 36 36 H 1.09006 * 109.46955 * 55.83053 * 10 8 7 37 37 H 1.09001 * 109.47205 * 175.83046 * 10 8 7 38 38 H 1.09003 * 109.46957 * 204.25328 * 14 13 11 39 39 H 1.09000 * 109.47018 * 324.25080 * 14 13 11 40 40 H 0.96996 * 120.00538 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46878 * 209.99504 * 23 13 11 42 42 H 1.08998 * 109.46665 * 329.99610 * 23 13 11 43 43 H 1.09003 * 109.47225 * 300.00314 * 24 23 13 44 44 H 1.09002 * 109.46824 * 59.99549 * 24 23 13 45 45 H 1.08996 * 109.46852 * 55.00193 * 25 24 23 46 46 H 1.08996 * 109.47311 * 60.00257 * 26 25 24 47 47 H 1.09003 * 109.46630 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.46806 * 299.99786 * 26 25 24 49 49 H 1.09005 * 109.47045 * 299.99854 * 27 25 24 50 50 H 1.08995 * 109.47399 * 60.00150 * 27 25 24 51 51 H 1.09002 * 109.47010 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0053 5 6 4.2716 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0062 7 6 2.1980 -1.1969 -0.0058 8 6 1.4445 -2.5020 -0.0115 9 1 0.3779 -2.3063 0.0985 10 6 1.9255 -3.3738 1.1503 11 6 1.6919 -3.2192 -1.3136 12 8 2.6422 -2.9144 -2.0027 13 7 0.8572 -4.1994 -1.7122 14 6 -0.3225 -4.5289 -0.9085 15 6 -1.4513 -3.5974 -1.2677 16 1 -1.3048 -2.8363 -2.0198 17 6 -2.6714 -3.7175 -0.6368 18 7 -2.8500 -4.6445 0.2787 19 14 -4.0708 -2.5632 -1.0826 20 1 -3.6164 -1.6167 -2.1328 21 1 -5.2210 -3.3529 -1.5913 22 1 -4.4874 -1.8019 0.1225 23 6 1.1295 -4.9354 -2.9494 24 6 1.9997 -6.1543 -2.6367 25 6 2.2836 -6.9232 -3.9286 26 6 3.2543 -8.0694 -3.6371 27 6 0.9752 -7.4912 -4.4820 28 1 -0.3634 -0.1173 1.0210 29 1 -0.3634 -0.8255 -0.6120 30 1 -0.3633 0.9428 -0.4088 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1326 0.0097 33 1 5.3516 -0.0001 -0.0013 34 1 4.1205 -2.1323 -0.0114 35 1 2.9742 -3.6309 1.0016 36 1 1.8149 -2.8255 2.0859 37 1 1.3299 -4.2858 1.1910 38 1 -0.6226 -5.5576 -1.1084 39 1 -0.0835 -4.4193 0.1494 40 1 -3.7084 -4.7293 0.7222 41 1 0.1888 -5.2642 -3.3910 42 1 1.6527 -4.2856 -3.6509 43 1 2.9404 -5.8254 -2.1950 44 1 1.4765 -6.8039 -1.9351 45 1 2.7264 -6.2497 -4.6624 46 1 2.8115 -8.7429 -2.9034 47 1 3.4568 -8.6169 -4.5577 48 1 4.1865 -7.6646 -3.2429 49 1 0.5323 -8.1647 -3.7481 50 1 0.2837 -6.6747 -4.6897 51 1 1.1775 -8.0394 -5.4022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144537134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:07 Heat of formation + Delta-G solvation = -55.268617 kcal Electronic energy + Delta-G solvation = -27957.756344 eV Core-core repulsion = 24434.273091 eV Total energy + Delta-G solvation = -3523.483253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45274 -39.87609 -37.83775 -36.41373 -35.05752 -34.46776 -33.48489 -30.98673 -30.09010 -28.72233 -27.99971 -27.66910 -25.95559 -24.92763 -24.31184 -22.64364 -21.66154 -20.88073 -19.66657 -18.63798 -17.96159 -17.49989 -16.81639 -16.50402 -16.35834 -16.03870 -15.77858 -15.40878 -15.10992 -14.77035 -14.58853 -14.45611 -14.30012 -14.05216 -13.91439 -13.75068 -13.46222 -13.34160 -13.18803 -13.08324 -12.95707 -12.86958 -12.71829 -12.69495 -12.50028 -12.43320 -12.26446 -12.06447 -11.83942 -11.73302 -11.63784 -11.55452 -11.44831 -11.40049 -10.67254 -10.46804 -9.60797 -9.42466 -9.38802 -8.19305 -6.32913 0.49002 0.58086 1.38451 1.42893 1.52325 1.80332 2.31162 2.45547 2.95363 3.10812 3.72178 3.77732 3.91076 3.98627 4.04279 4.07833 4.11379 4.24198 4.32214 4.34630 4.44105 4.49478 4.57427 4.65963 4.67243 4.75964 4.77684 4.79859 4.82976 4.86266 4.89315 4.94128 4.99812 5.02557 5.04135 5.10282 5.12123 5.14955 5.24588 5.30545 5.35652 5.37264 5.46262 5.50557 5.64558 5.66796 5.69603 5.86083 5.90163 6.08835 6.20711 6.58050 6.83866 7.32879 7.44324 8.86184 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.005905 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.671949 B = 4740.802543 C = 7447.954341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.096 4.096 7 C -0.081 4.081 8 C -0.077 4.077 9 H 0.107 0.893 10 C -0.128 4.128 11 C 0.522 3.478 12 O -0.588 6.588 13 N -0.599 5.599 14 C 0.248 3.752 15 C -0.541 4.541 16 H 0.047 0.953 17 C 0.030 3.970 18 N -0.916 5.916 19 Si 0.944 3.056 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.273 1.273 23 C 0.117 3.883 24 C -0.114 4.114 25 C -0.090 4.090 26 C -0.141 4.141 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.048 0.952 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 2.806 -0.987 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.114 4.114 7 C -0.081 4.081 8 C -0.098 4.098 9 H 0.125 0.875 10 C -0.185 4.185 11 C 0.311 3.689 12 O -0.470 6.470 13 N -0.328 5.328 14 C 0.128 3.872 15 C -0.580 4.580 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.555 5.555 19 Si 0.770 3.230 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.199 1.199 23 C -0.006 4.006 24 C -0.153 4.153 25 C -0.109 4.109 26 C -0.198 4.198 27 C -0.204 4.204 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.300 2.853 -1.223 10.757 hybrid contribution -1.209 0.189 -0.184 1.238 sum 9.090 3.042 -1.407 9.688 Atomic orbital electron populations 1.20875 0.91197 1.02876 1.02731 1.20009 0.96370 0.93123 0.99894 1.21256 0.94927 0.97229 1.01442 1.21426 0.94071 0.98779 0.99414 1.21363 1.00800 0.92109 1.01178 1.20985 0.93324 0.98633 0.98459 1.19416 0.94115 0.93119 1.01499 1.20325 1.02624 0.93374 0.93428 0.87546 1.21694 1.01043 0.99203 0.96574 1.20650 0.81417 0.79218 0.87624 1.90556 1.32072 1.66990 1.57386 1.48231 1.25514 1.34533 1.24546 1.19215 0.81375 0.95557 0.91094 1.21619 0.97092 1.17045 1.22207 0.93456 1.25512 1.00334 0.96645 0.94616 1.69994 1.25432 1.33911 1.26130 0.85707 0.79523 0.79304 0.78470 1.19639 1.20560 1.19862 1.21463 0.99703 0.93069 0.86349 1.21869 0.98852 0.96029 0.98533 1.21035 0.96924 0.97169 0.95809 1.21786 0.98374 0.97517 1.02104 1.21879 0.96536 1.00776 1.01233 0.90533 0.92936 0.90154 0.84000 0.83206 0.84099 0.87099 0.92061 0.90351 0.92119 0.96174 0.94400 0.92304 0.90731 0.92109 0.93280 0.92450 0.91311 0.92674 0.91184 0.92977 0.92900 0.93338 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 9.12 71.24 0.65 -3.29 16 2 C -0.09 -3.13 5.88 -19.87 -0.12 -3.25 16 3 C -0.13 -3.58 9.68 22.27 0.22 -3.37 16 4 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 5 C -0.14 -3.74 10.05 22.27 0.22 -3.51 16 6 C -0.10 -3.20 8.00 22.27 0.18 -3.02 16 7 C -0.08 -2.94 4.51 -19.87 -0.09 -3.03 16 8 C -0.08 -2.99 1.79 -12.29 -0.02 -3.02 16 9 H 0.11 4.57 4.17 -2.39 -0.01 4.56 16 10 C -0.13 -4.35 8.63 71.98 0.62 -3.73 16 11 C 0.52 22.66 6.77 87.65 0.59 23.26 16 12 O -0.59 -27.41 14.69 -3.03 -0.04 -27.46 16 13 N -0.60 -25.90 2.47 -826.15 -2.04 -27.94 16 14 C 0.25 11.81 4.81 85.63 0.41 12.22 16 15 C -0.54 -27.84 8.49 25.60 0.22 -27.62 16 16 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 17 C 0.03 1.53 5.46 84.66 0.46 2.00 16 18 N -0.92 -49.30 13.29 21.45 0.28 -49.02 16 19 Si 0.94 41.18 29.54 68.60 2.03 43.21 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.12 4.47 5.16 86.38 0.45 4.91 16 24 C -0.11 -3.69 5.01 30.59 0.15 -3.54 16 25 C -0.09 -2.32 2.92 -10.79 -0.03 -2.36 16 26 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 27 C -0.15 -3.57 8.95 71.98 0.64 -2.93 16 28 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.05 2.05 6.59 -2.39 -0.02 2.03 16 30 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.11 3.75 7.15 -2.91 -0.02 3.73 16 35 H 0.06 1.94 7.24 -2.39 -0.02 1.93 16 36 H 0.08 2.37 8.14 -2.38 -0.02 2.36 16 37 H 0.06 2.17 6.19 -2.39 -0.01 2.16 16 38 H 0.02 1.01 8.03 -2.39 -0.02 1.00 16 39 H 0.04 1.85 4.91 -2.39 -0.01 1.83 16 40 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.07 2.84 6.49 -2.39 -0.02 2.83 16 42 H 0.06 2.41 7.39 -2.39 -0.02 2.39 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.05 1.28 6.56 -2.39 -0.02 1.26 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -60.25 400.24 6.55 -53.70 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.89 Total: 32.84 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.44 Total: -25.35 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.76 Total: -76.95 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.46 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -60.25 6.55 -53.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144537134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.567 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds