Wall clock time and date at job start Tue Mar 31 2020 11:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99864 * 2 1 4 4 C 1.38207 * 119.99828 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00103 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.38210 * 119.99853 * 179.73239 * 2 1 3 8 8 C 1.50703 * 120.00278 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.46744 * 5.57321 * 8 7 2 10 10 C 1.52997 * 109.46992 * 125.57043 * 8 7 2 11 11 C 1.50699 * 109.47118 * 245.57007 * 8 7 2 12 12 O 1.21283 * 120.00260 * 332.00879 * 11 8 7 13 13 N 1.34777 * 119.99652 * 152.00662 * 11 8 7 14 14 C 1.46501 * 120.00042 * 5.04091 * 13 11 8 15 15 C 1.50694 * 109.47610 * 84.00689 * 14 13 11 16 16 H 1.08009 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00345 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99507 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47313 * 59.99926 * 19 17 15 21 21 H 1.48500 * 109.47316 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47441 * 300.00413 * 19 17 15 23 23 C 1.46500 * 119.99584 * 185.03114 * 13 11 8 24 24 C 1.53007 * 109.46838 * 90.00862 * 23 13 11 25 25 C 1.52993 * 109.47016 * 179.97438 * 24 23 13 26 26 C 1.52993 * 109.47219 * 174.99812 * 25 24 23 27 27 C 1.53003 * 109.47075 * 294.99780 * 25 24 23 28 28 H 1.09009 * 109.47149 * 89.20517 * 1 2 3 29 29 H 1.08999 * 109.47171 * 329.20598 * 1 2 3 30 30 H 1.08992 * 109.47051 * 209.20350 * 1 2 3 31 31 H 1.07996 * 119.99859 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.99766 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.99674 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.00293 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47150 * 63.10211 * 10 8 7 36 36 H 1.08996 * 109.47171 * 183.10397 * 10 8 7 37 37 H 1.09000 * 109.47423 * 303.10634 * 10 8 7 38 38 H 1.09000 * 109.46971 * 204.00926 * 14 13 11 39 39 H 1.09001 * 109.46916 * 324.00673 * 14 13 11 40 40 H 0.97001 * 119.99534 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46800 * 210.00052 * 23 13 11 42 42 H 1.08994 * 109.47305 * 330.00613 * 23 13 11 43 43 H 1.09004 * 109.46764 * 299.99212 * 24 23 13 44 44 H 1.09000 * 109.47168 * 59.99428 * 24 23 13 45 45 H 1.09002 * 109.47580 * 54.99271 * 25 24 23 46 46 H 1.09004 * 109.47659 * 59.99958 * 26 25 24 47 47 H 1.09003 * 109.47674 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.47227 * 299.99458 * 26 25 24 49 49 H 1.08996 * 109.47264 * 59.99917 * 27 25 24 50 50 H 1.09003 * 109.47256 * 180.02562 * 27 25 24 51 51 H 1.09003 * 109.47326 * 299.99743 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 2.1980 -1.1969 0.0056 8 6 1.4446 -2.5021 0.0123 9 1 0.3771 -2.3058 -0.0881 10 6 1.9158 -3.3690 -1.1570 11 6 1.7028 -3.2246 1.3093 12 8 2.7434 -3.0460 1.9062 13 7 0.7773 -4.0691 1.8060 14 6 -0.4300 -4.3699 1.0326 15 6 -0.1339 -5.4703 0.0465 16 1 0.8551 -5.9021 0.0002 17 6 -1.1252 -5.9258 -0.7966 18 7 -2.3292 -5.3995 -0.7404 19 14 -0.7579 -7.2892 -2.0194 20 1 -0.3219 -8.5059 -1.2880 21 1 -1.9821 -7.5950 -2.8024 22 1 0.3223 -6.8512 -2.9395 23 6 0.9789 -4.6865 3.1192 24 6 0.3719 -3.7918 4.2019 25 6 0.5819 -4.4368 5.5732 26 6 0.0872 -3.4861 6.6651 27 6 -0.2026 -5.7485 5.6454 28 1 -0.3634 0.0143 -1.0276 29 1 -0.3633 0.8828 0.5261 30 1 -0.3633 -0.8970 0.5014 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0001 0.0014 34 1 4.1206 -2.1322 0.0010 35 1 2.9707 -3.6110 -1.0278 36 1 1.3326 -4.2894 -1.1851 37 1 1.7800 -2.8241 -2.0912 38 1 -1.2233 -4.6909 1.7077 39 1 -0.7492 -3.4768 0.4954 40 1 -3.0265 -5.7197 -1.3338 41 1 0.4937 -5.6624 3.1402 42 1 2.0463 -4.8073 3.3039 43 1 0.8572 -2.8160 4.1809 44 1 -0.6955 -3.6710 4.0171 45 1 1.6426 -4.6394 5.7210 46 1 -0.9736 -3.2836 6.5174 47 1 0.2363 -3.9458 7.6421 48 1 0.6462 -2.5517 6.6138 49 1 0.1497 -6.4258 4.8675 50 1 -0.0534 -6.2078 6.6225 51 1 -1.2634 -5.5460 5.4977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144537135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:12 Heat of formation + Delta-G solvation = -42.147797 kcal Electronic energy + Delta-G solvation = -27937.277964 eV Core-core repulsion = 24414.363673 eV Total energy + Delta-G solvation = -3522.914291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.98163 -38.51340 -36.55203 -34.73843 -33.69930 -32.60059 -32.24384 -29.62244 -28.61823 -27.10242 -26.89018 -26.52148 -24.46975 -23.06840 -22.95330 -21.40251 -20.41638 -19.69446 -18.06485 -16.59597 -16.51569 -16.12938 -15.45603 -15.04789 -14.92545 -14.56220 -14.24209 -14.20931 -13.69348 -13.58571 -13.21975 -13.14890 -12.78035 -12.59546 -12.46914 -12.38792 -12.20627 -12.06758 -11.77545 -11.65849 -11.59744 -11.45602 -11.21509 -11.16539 -11.04727 -10.87941 -10.83726 -10.63489 -10.52459 -10.44844 -10.23017 -10.09865 -10.00343 -9.70244 -8.92824 -8.57276 -8.42405 -8.18823 -7.67025 -6.21658 -4.27459 1.66174 1.75065 3.21680 3.27294 3.29404 3.47546 3.88334 4.18362 4.31774 5.04767 5.08269 5.09737 5.11431 5.13647 5.15985 5.26413 5.33440 5.47441 5.55984 5.64900 5.69276 5.73373 5.82783 5.85841 5.90482 5.95317 5.96941 6.00887 6.01183 6.03577 6.11936 6.15397 6.25825 6.32749 6.39749 6.40570 6.45471 6.48888 6.53297 6.63839 6.69671 6.77402 6.79776 6.84094 7.04597 7.10440 7.19367 7.35698 7.56331 7.74391 8.03657 8.35939 8.77041 9.07430 9.38564 10.84656 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.005840 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.333504 B = 4793.207015 C = 7343.590960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.077 4.077 7 C -0.061 4.061 8 C -0.071 4.071 9 H 0.108 0.892 10 C -0.147 4.147 11 C 0.526 3.474 12 O -0.569 6.569 13 N -0.596 5.596 14 C 0.237 3.763 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.119 3.881 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.144 4.144 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 7.671 5.032 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.061 4.061 8 C -0.092 4.092 9 H 0.126 0.874 10 C -0.204 4.204 11 C 0.315 3.685 12 O -0.450 6.450 13 N -0.326 5.326 14 C 0.118 3.882 15 C -0.573 4.573 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.005 4.005 24 C -0.166 4.166 25 C -0.112 4.112 26 C -0.202 4.202 27 C -0.206 4.206 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.993 7.727 5.259 10.597 hybrid contribution 0.012 -0.770 -0.727 1.059 sum 5.005 6.957 4.532 9.695 Atomic orbital electron populations 1.20887 0.91379 1.02870 1.02527 1.19788 0.95978 0.92605 0.99760 1.20871 0.94187 0.97020 1.02638 1.21002 0.94270 0.97652 1.01420 1.21054 0.99445 0.92628 1.02105 1.21002 0.93716 0.97969 0.96860 1.19512 0.93723 0.93462 0.99434 1.20291 1.01909 0.92187 0.94763 0.87402 1.21963 1.01442 1.01935 0.95100 1.20259 0.83114 0.79209 0.85957 1.90577 1.26412 1.66095 1.61911 1.48203 1.22667 1.43655 1.18053 1.19436 0.81397 0.96573 0.90837 1.21416 0.97324 1.19629 1.18925 0.91929 1.24913 0.94825 0.96631 0.97222 1.69905 1.02156 1.42020 1.38552 0.86650 0.77847 0.82388 0.81214 1.20138 1.21138 1.19903 1.21345 1.00924 0.96053 0.82129 1.21994 1.01420 0.99441 0.93699 1.21041 1.00004 0.95417 0.94773 1.21820 1.01175 0.99190 0.98001 1.21900 1.00421 0.97062 1.01243 0.90983 0.91854 0.90835 0.86597 0.86767 0.86673 0.85966 0.93407 0.87727 0.92745 0.94574 0.94613 0.92435 0.90502 0.91180 0.92194 0.91832 0.91388 0.92800 0.93084 0.92944 0.92115 0.93268 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.36 36.01 0.34 -1.37 16 2 C -0.08 -1.29 5.88 -104.62 -0.62 -1.91 16 3 C -0.13 -1.82 9.71 -39.59 -0.38 -2.21 16 4 C -0.13 -1.71 10.05 -39.59 -0.40 -2.10 16 5 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 6 C -0.08 -1.33 8.00 -39.58 -0.32 -1.64 16 7 C -0.06 -1.08 4.61 -104.62 -0.48 -1.56 16 8 C -0.07 -1.35 1.97 -92.92 -0.18 -1.53 16 9 H 0.11 2.09 3.52 -51.93 -0.18 1.90 16 10 C -0.15 -2.77 8.82 37.16 0.33 -2.44 16 11 C 0.53 11.05 6.68 -10.99 -0.07 10.97 16 12 O -0.57 -12.90 14.60 5.55 0.08 -12.82 16 13 N -0.60 -12.34 2.47 -175.06 -0.43 -12.78 16 14 C 0.24 5.40 4.97 -5.20 -0.03 5.38 16 15 C -0.53 -13.14 6.86 -34.44 -0.24 -13.38 16 16 H 0.06 1.58 7.45 -52.48 -0.39 1.19 16 17 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -23.48 13.29 55.43 0.74 -22.74 16 19 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.12 2.18 5.18 -4.04 -0.02 2.16 16 24 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 25 C -0.09 -1.23 2.92 -90.63 -0.26 -1.50 16 26 C -0.14 -1.68 9.19 37.15 0.34 -1.34 16 27 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 28 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 1.15 6.13 -51.93 -0.32 0.83 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 2.16 6.95 -52.49 -0.36 1.79 16 35 H 0.05 0.86 7.21 -51.93 -0.37 0.49 16 36 H 0.10 2.21 4.96 -51.93 -0.26 1.95 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.04 0.84 6.00 -51.93 -0.31 0.53 16 40 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.08 1.39 6.49 -51.93 -0.34 1.06 16 42 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -27.43 397.52 -9.66 -37.09 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.73 Total: 7.33 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.29 Total: -16.93 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.30 Total: -35.52 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.43 -9.66 -37.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144537135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.054 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds