Wall clock time and date at job start Tue Mar 31 2020 11:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99864 * 2 1 4 4 C 1.38207 * 119.99828 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00103 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.38210 * 119.99853 * 179.73239 * 2 1 3 8 8 C 1.50703 * 120.00278 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.46744 * 5.57321 * 8 7 2 10 10 C 1.52997 * 109.46992 * 125.57043 * 8 7 2 11 11 C 1.50699 * 109.47118 * 245.57007 * 8 7 2 12 12 O 1.21283 * 120.00260 * 332.00879 * 11 8 7 13 13 N 1.34777 * 119.99652 * 152.00662 * 11 8 7 14 14 C 1.46501 * 120.00042 * 5.04091 * 13 11 8 15 15 C 1.50694 * 109.47610 * 84.00689 * 14 13 11 16 16 H 1.08009 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00345 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99507 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47313 * 59.99926 * 19 17 15 21 21 H 1.48500 * 109.47316 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47441 * 300.00413 * 19 17 15 23 23 C 1.46500 * 119.99584 * 185.03114 * 13 11 8 24 24 C 1.53007 * 109.46838 * 90.00862 * 23 13 11 25 25 C 1.52993 * 109.47016 * 179.97438 * 24 23 13 26 26 C 1.52993 * 109.47219 * 174.99812 * 25 24 23 27 27 C 1.53003 * 109.47075 * 294.99780 * 25 24 23 28 28 H 1.09009 * 109.47149 * 89.20517 * 1 2 3 29 29 H 1.08999 * 109.47171 * 329.20598 * 1 2 3 30 30 H 1.08992 * 109.47051 * 209.20350 * 1 2 3 31 31 H 1.07996 * 119.99859 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.99766 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.99674 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.00293 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47150 * 63.10211 * 10 8 7 36 36 H 1.08996 * 109.47171 * 183.10397 * 10 8 7 37 37 H 1.09000 * 109.47423 * 303.10634 * 10 8 7 38 38 H 1.09000 * 109.46971 * 204.00926 * 14 13 11 39 39 H 1.09001 * 109.46916 * 324.00673 * 14 13 11 40 40 H 0.97001 * 119.99534 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46800 * 210.00052 * 23 13 11 42 42 H 1.08994 * 109.47305 * 330.00613 * 23 13 11 43 43 H 1.09004 * 109.46764 * 299.99212 * 24 23 13 44 44 H 1.09000 * 109.47168 * 59.99428 * 24 23 13 45 45 H 1.09002 * 109.47580 * 54.99271 * 25 24 23 46 46 H 1.09004 * 109.47659 * 59.99958 * 26 25 24 47 47 H 1.09003 * 109.47674 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.47227 * 299.99458 * 26 25 24 49 49 H 1.08996 * 109.47264 * 59.99917 * 27 25 24 50 50 H 1.09003 * 109.47256 * 180.02562 * 27 25 24 51 51 H 1.09003 * 109.47326 * 299.99743 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 2.1980 -1.1969 0.0056 8 6 1.4446 -2.5021 0.0123 9 1 0.3771 -2.3058 -0.0881 10 6 1.9158 -3.3690 -1.1570 11 6 1.7028 -3.2246 1.3093 12 8 2.7434 -3.0460 1.9062 13 7 0.7773 -4.0691 1.8060 14 6 -0.4300 -4.3699 1.0326 15 6 -0.1339 -5.4703 0.0465 16 1 0.8551 -5.9021 0.0002 17 6 -1.1252 -5.9258 -0.7966 18 7 -2.3292 -5.3995 -0.7404 19 14 -0.7579 -7.2892 -2.0194 20 1 -0.3219 -8.5059 -1.2880 21 1 -1.9821 -7.5950 -2.8024 22 1 0.3223 -6.8512 -2.9395 23 6 0.9789 -4.6865 3.1192 24 6 0.3719 -3.7918 4.2019 25 6 0.5819 -4.4368 5.5732 26 6 0.0872 -3.4861 6.6651 27 6 -0.2026 -5.7485 5.6454 28 1 -0.3634 0.0143 -1.0276 29 1 -0.3633 0.8828 0.5261 30 1 -0.3633 -0.8970 0.5014 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0001 0.0014 34 1 4.1206 -2.1322 0.0010 35 1 2.9707 -3.6110 -1.0278 36 1 1.3326 -4.2894 -1.1851 37 1 1.7800 -2.8241 -2.0912 38 1 -1.2233 -4.6909 1.7077 39 1 -0.7492 -3.4768 0.4954 40 1 -3.0265 -5.7197 -1.3338 41 1 0.4937 -5.6624 3.1402 42 1 2.0463 -4.8073 3.3039 43 1 0.8572 -2.8160 4.1809 44 1 -0.6955 -3.6710 4.0171 45 1 1.6426 -4.6394 5.7210 46 1 -0.9736 -3.2836 6.5174 47 1 0.2363 -3.9458 7.6421 48 1 0.6462 -2.5517 6.6138 49 1 0.1497 -6.4258 4.8675 50 1 -0.0534 -6.2078 6.6225 51 1 -1.2634 -5.5460 5.4977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144537135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:10 Heat of formation + Delta-G solvation = -52.545728 kcal Electronic energy + Delta-G solvation = -27937.728852 eV Core-core repulsion = 24414.363673 eV Total energy + Delta-G solvation = -3523.365179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.46419 -39.88612 -37.85192 -36.42626 -35.05103 -34.45967 -33.47100 -30.99116 -30.01169 -28.80554 -28.00112 -27.68009 -25.92533 -24.95429 -24.30564 -22.66422 -21.66207 -20.87637 -19.69338 -18.43924 -18.16035 -17.55923 -16.85227 -16.49721 -16.26740 -16.09780 -15.70781 -15.53996 -14.98977 -14.77603 -14.53263 -14.41953 -14.27683 -14.13135 -13.94130 -13.71786 -13.47806 -13.23846 -13.18727 -13.13904 -13.00938 -12.78775 -12.70127 -12.64527 -12.61425 -12.40160 -12.22761 -12.01543 -11.85087 -11.76007 -11.62144 -11.55340 -11.45977 -11.38433 -10.65650 -10.44999 -9.61875 -9.44502 -9.38243 -8.17879 -6.29283 0.47398 0.56984 1.42990 1.44642 1.51032 1.79107 2.30287 2.46108 2.94304 3.12271 3.76346 3.77806 3.91680 3.94618 4.03905 4.07236 4.11280 4.18848 4.32263 4.33720 4.43738 4.49460 4.57066 4.66572 4.69291 4.75461 4.79760 4.81540 4.82805 4.89543 4.91374 4.94920 4.97378 5.02763 5.05446 5.11323 5.14246 5.18911 5.26684 5.31253 5.33673 5.45590 5.46078 5.50201 5.63282 5.66780 5.69499 5.84041 5.89973 6.09163 6.19666 6.57534 6.83721 7.32868 7.44156 8.87507 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.005840 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.333504 B = 4793.207015 C = 7343.590960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.098 4.098 7 C -0.086 4.086 8 C -0.065 4.065 9 H 0.101 0.899 10 C -0.140 4.140 11 C 0.522 3.478 12 O -0.588 6.588 13 N -0.600 5.600 14 C 0.254 3.746 15 C -0.535 4.535 16 H 0.053 0.947 17 C 0.029 3.971 18 N -0.916 5.916 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.117 3.883 24 C -0.115 4.115 25 C -0.090 4.090 26 C -0.141 4.141 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.027 0.973 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 9.086 5.301 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.156 4.156 6 C -0.116 4.116 7 C -0.086 4.086 8 C -0.085 4.085 9 H 0.118 0.882 10 C -0.197 4.197 11 C 0.311 3.689 12 O -0.470 6.470 13 N -0.329 5.329 14 C 0.133 3.867 15 C -0.573 4.573 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.555 5.555 19 Si 0.771 3.229 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.006 4.006 24 C -0.153 4.153 25 C -0.109 4.109 26 C -0.198 4.198 27 C -0.204 4.204 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.561 9.136 5.538 12.044 hybrid contribution -0.114 -1.156 -0.785 1.402 sum 5.447 7.980 4.753 10.768 Atomic orbital electron populations 1.20880 0.90644 1.02807 1.03065 1.20038 0.96767 0.92769 0.99910 1.21257 0.94741 0.97375 1.01199 1.21440 0.94313 0.98576 0.99315 1.21356 1.00743 0.92191 1.01312 1.21004 0.93652 0.98506 0.98450 1.19487 0.94092 0.93261 1.01801 1.20201 1.01754 0.93086 0.93489 0.88168 1.21849 1.00938 1.00960 0.95947 1.20656 0.82694 0.79009 0.86526 1.90549 1.27061 1.66775 1.62653 1.48247 1.22059 1.43795 1.18783 1.19098 0.81654 0.95680 0.90234 1.21505 0.96822 1.19795 1.19218 0.92882 1.25513 0.94643 0.98427 0.98608 1.69989 1.02834 1.43221 1.39408 0.85801 0.77760 0.79965 0.79390 1.20028 1.20770 1.19416 1.21470 1.00630 0.96605 0.81884 1.21874 1.00400 0.98351 0.94716 1.21032 1.00388 0.96056 0.93437 1.21787 1.01095 0.98753 0.98168 1.21876 0.99969 0.96426 1.02100 0.90204 0.89551 0.93109 0.83552 0.83162 0.84411 0.87646 0.93297 0.90169 0.91247 0.96041 0.95477 0.92349 0.90505 0.91915 0.93661 0.92450 0.91278 0.92674 0.91109 0.93120 0.93235 0.91112 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 9.36 71.24 0.67 -2.60 16 2 C -0.09 -2.92 5.88 -19.87 -0.12 -3.04 16 3 C -0.13 -3.24 9.71 22.27 0.22 -3.02 16 4 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 5 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 6 C -0.10 -3.36 8.00 22.27 0.18 -3.18 16 7 C -0.09 -3.07 4.61 -19.86 -0.09 -3.16 16 8 C -0.06 -2.54 1.97 -12.29 -0.02 -2.57 16 9 H 0.10 4.06 3.52 -2.39 -0.01 4.06 16 10 C -0.14 -5.42 8.82 71.98 0.64 -4.78 16 11 C 0.52 22.77 6.68 87.66 0.59 23.35 16 12 O -0.59 -27.55 14.60 -3.04 -0.04 -27.60 16 13 N -0.60 -25.88 2.47 -826.15 -2.04 -27.92 16 14 C 0.25 12.02 4.97 85.63 0.43 12.45 16 15 C -0.54 -27.00 6.86 25.60 0.18 -26.83 16 16 H 0.05 2.75 7.45 -2.91 -0.02 2.73 16 17 C 0.03 1.48 5.46 84.66 0.46 1.94 16 18 N -0.92 -49.05 13.29 21.45 0.28 -48.76 16 19 Si 0.95 40.95 29.54 68.60 2.03 42.97 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 C 0.12 4.44 5.18 86.38 0.45 4.89 16 24 C -0.11 -3.75 5.01 30.59 0.15 -3.60 16 25 C -0.09 -2.33 2.92 -10.80 -0.03 -2.36 16 26 C -0.14 -3.07 9.19 71.98 0.66 -2.40 16 27 C -0.15 -3.54 8.95 71.98 0.64 -2.89 16 28 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 30 H 0.05 1.63 6.13 -2.39 -0.01 1.61 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.11 3.86 6.95 -2.91 -0.02 3.84 16 35 H 0.05 1.83 7.21 -2.39 -0.02 1.81 16 36 H 0.08 3.50 4.96 -2.39 -0.01 3.49 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.02 1.07 8.03 -2.39 -0.02 1.06 16 39 H 0.03 1.34 6.00 -2.39 -0.01 1.33 16 40 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.08 2.89 6.49 -2.38 -0.02 2.87 16 42 H 0.06 2.46 7.36 -2.39 -0.02 2.45 16 43 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.05 1.29 6.56 -2.39 -0.02 1.28 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 51 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -59.48 397.52 6.55 -52.93 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.89 Total: 32.40 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.43 Total: -24.02 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.76 Total: -76.68 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.04 Total: -27.60 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -59.48 6.55 -52.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144537135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.386 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds