Wall clock time and date at job start Tue Mar 31 2020 12:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46756 * 2 1 4 4 C 1.52989 * 109.47218 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.47022 * 119.99814 * 2 1 3 6 6 C 1.53003 * 109.46774 * 60.00171 * 5 2 1 7 7 C 1.53001 * 109.47052 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47119 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46841 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.47108 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99520 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00238 * 179.97438 * 10 9 8 13 13 C 1.39934 * 120.00005 * 174.88976 * 12 10 9 14 14 C 1.39294 * 119.94501 * 145.78381 * 13 12 10 15 15 C 1.38483 * 120.42931 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.32043 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.88274 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20463 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99598 * 205.17493 * 18 17 16 20 20 C 1.39927 * 120.00705 * 25.17815 * 18 17 16 21 21 N 1.30837 * 119.99797 * 16.78875 * 20 18 17 22 22 Si 1.86796 * 120.00403 * 196.79745 * 20 18 17 23 23 H 1.48497 * 109.47254 * 94.96032 * 22 20 18 24 24 H 1.48498 * 109.47287 * 214.95974 * 22 20 18 25 25 H 1.48498 * 109.47020 * 334.95887 * 22 20 18 26 26 C 1.38237 * 119.94620 * 325.51339 * 13 12 10 27 27 H 1.09002 * 109.47899 * 300.00086 * 1 2 3 28 28 H 1.09006 * 109.47188 * 60.00249 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47270 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47507 * 300.00205 * 3 2 1 32 32 H 1.09003 * 109.47191 * 60.00112 * 3 2 1 33 33 H 1.09001 * 109.47634 * 299.99705 * 4 2 1 34 34 H 1.09007 * 109.47492 * 60.00263 * 4 2 1 35 35 H 1.09003 * 109.47221 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46865 * 300.00733 * 5 2 1 37 37 H 1.08994 * 109.46941 * 180.02562 * 5 2 1 38 38 H 1.09006 * 109.46755 * 60.00162 * 6 5 2 39 39 H 1.08994 * 109.47292 * 299.99669 * 6 5 2 40 40 H 1.09003 * 109.47027 * 60.00043 * 7 6 5 41 41 H 1.09001 * 109.46818 * 300.00756 * 7 6 5 42 42 H 1.08990 * 109.47344 * 60.00321 * 8 7 6 43 43 H 1.09003 * 109.47203 * 299.99681 * 8 7 6 44 44 H 1.08998 * 109.47429 * 299.99635 * 9 8 7 45 45 H 1.08994 * 109.47587 * 59.99874 * 9 8 7 46 46 H 0.97004 * 119.99772 * 354.89348 * 12 10 9 47 47 H 1.08000 * 119.78664 * 359.97438 * 14 13 12 48 48 H 1.07999 * 119.84314 * 180.02562 * 15 14 13 49 49 H 1.08004 * 120.05706 * 180.02562 * 16 15 14 50 50 H 0.96998 * 120.00174 * 180.02562 * 21 20 18 51 51 H 1.07998 * 120.16325 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2492 7 6 2.0404 -2.8852 2.4982 8 6 1.5309 -4.3279 2.4978 9 6 2.0409 -5.0491 3.7471 10 6 1.5386 -6.4700 3.7471 11 8 0.8409 -6.8665 2.8376 12 7 1.8645 -7.3000 4.7576 13 6 1.3125 -8.5846 4.8137 14 6 2.0644 -9.6431 5.3182 15 6 1.5282 -10.9185 5.3778 16 6 0.2446 -11.1542 4.9390 17 6 -0.5270 -10.0944 4.4268 18 6 -1.8459 -10.3288 3.9737 19 1 -2.2880 -9.6745 3.2369 20 6 -2.5782 -11.4083 4.4800 21 7 -2.1961 -11.9978 5.5838 22 14 -4.1012 -12.0081 3.5799 23 1 -3.7350 -13.1337 2.6832 24 1 -5.1100 -12.4696 4.5670 25 1 -4.6692 -10.8977 2.7739 26 6 0.0199 -8.8000 4.3735 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.6765 -0.2074 2.1392 37 1 3.1299 -0.7208 1.2495 38 1 1.8934 -2.6775 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 1.6774 -2.3715 3.3884 41 1 3.1304 -2.8851 2.4978 42 1 1.8943 -4.8413 1.6077 43 1 0.4409 -4.3283 2.4980 44 1 3.1309 -5.0487 3.7473 45 1 1.6773 -4.5356 4.6370 46 1 2.4818 -7.0068 5.4461 47 1 3.0723 -9.4682 5.6643 48 1 2.1195 -11.7322 5.7711 49 1 -0.1695 -12.1505 4.9878 50 1 -2.7035 -12.7463 5.9346 51 1 -0.5655 -7.9791 3.9866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144682612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:23 Heat of formation + Delta-G solvation = -65.697214 kcal Electronic energy + Delta-G solvation = -25407.717269 eV Core-core repulsion = 21883.781799 eV Total energy + Delta-G solvation = -3523.935471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.68098 -38.53327 -37.22327 -35.20025 -34.35674 -32.99553 -31.39587 -29.79473 -28.41607 -27.59683 -27.55296 -26.60201 -25.26611 -23.15505 -21.43699 -20.96901 -20.66384 -19.43462 -18.80669 -17.65802 -16.54517 -16.12307 -15.54580 -15.20232 -15.09758 -14.97288 -14.59156 -14.46975 -14.38926 -13.71225 -13.54141 -13.16180 -12.98562 -12.86479 -12.47230 -12.39041 -12.21418 -12.07726 -11.97957 -11.84419 -11.63706 -11.55847 -11.23129 -11.19493 -11.11977 -11.10023 -10.88149 -10.73922 -10.65998 -10.47654 -10.43609 -10.43351 -10.11652 -9.61787 -9.35130 -9.04333 -8.89839 -7.42542 -6.88298 -6.68629 -4.31277 2.64696 2.86411 3.11113 3.16499 3.22415 3.42635 3.70166 3.98783 4.38737 4.52319 4.53562 4.67224 4.84802 4.86898 4.91864 5.13888 5.17957 5.26059 5.32670 5.34510 5.41595 5.49683 5.50340 5.54873 5.60993 5.69818 5.70359 5.73208 5.74598 5.78979 5.85514 5.86426 6.02427 6.04290 6.12461 6.21934 6.27257 6.29234 6.38831 6.41854 6.82114 7.05466 7.08724 7.10747 7.28342 7.60293 7.76529 8.00554 8.12452 8.22388 8.30547 8.66658 8.79848 8.97169 9.01729 10.24248 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002076 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.390872 B =13485.623229 C =14864.499824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.104 4.104 9 C -0.138 4.138 10 C 0.501 3.499 11 O -0.519 6.519 12 N -0.672 5.672 13 C 0.151 3.849 14 C -0.263 4.263 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.210 4.210 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.397 0.603 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.279 0.721 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 20.464 -5.563 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.145 4.145 6 C -0.162 4.162 7 C -0.156 4.156 8 C -0.142 4.142 9 C -0.179 4.179 10 C 0.287 3.713 11 O -0.394 6.394 12 N -0.316 5.316 13 C 0.059 3.941 14 C -0.284 4.284 15 C -0.112 4.112 16 C -0.192 4.192 17 C 0.116 3.884 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.231 4.231 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.231 0.769 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.137 0.863 50 H 0.090 0.910 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.841 20.048 -6.064 22.365 hybrid contribution -0.283 -0.203 0.198 0.401 sum 7.558 19.845 -5.866 22.031 Atomic orbital electron populations 1.21943 0.94633 1.02182 1.01434 1.20565 0.95753 0.95220 0.95657 1.21875 1.00822 0.95606 1.01548 1.21938 1.00829 1.00665 0.96729 1.21646 1.00366 0.95538 0.96970 1.21729 1.01224 0.94956 0.98255 1.21615 1.00524 0.95313 0.98172 1.21340 1.01761 0.94137 0.96994 1.21684 1.02228 0.92900 1.01050 1.20734 0.81116 0.87542 0.81859 1.90747 1.36871 1.76772 1.34984 1.43536 1.47149 1.14148 1.26733 1.17459 0.92650 0.82417 1.01568 1.20048 0.98785 0.93011 1.16547 1.20463 0.95840 0.94724 1.00154 1.21344 0.92904 0.99687 1.05244 1.17506 0.92686 0.89794 0.88448 1.19592 0.97961 1.09962 1.21250 0.90372 1.25905 0.99253 0.95299 0.93750 1.69835 1.37930 1.18534 1.15870 0.86289 0.80548 0.79810 0.80021 1.19356 1.20339 1.18552 1.20966 0.93841 0.97292 1.11008 0.92783 0.92997 0.92058 0.92815 0.92851 0.92798 0.92072 0.92999 0.92820 0.92121 0.92150 0.91617 0.91560 0.92124 0.92187 0.91225 0.91123 0.89360 0.89175 0.76896 0.89360 0.89087 0.86328 0.90993 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.12 37.16 0.30 -0.75 16 2 C -0.07 -0.51 0.80 -154.51 -0.12 -0.63 16 3 C -0.14 -0.90 8.47 37.16 0.31 -0.58 16 4 C -0.14 -1.03 8.12 37.15 0.30 -0.73 16 5 C -0.11 -0.79 4.27 -26.73 -0.11 -0.91 16 6 C -0.12 -1.05 4.51 -26.73 -0.12 -1.17 16 7 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 8 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 9 C -0.14 -1.62 5.70 -27.88 -0.16 -1.78 16 10 C 0.50 8.85 7.56 -10.98 -0.08 8.77 16 11 O -0.52 -11.64 13.74 5.55 0.08 -11.56 16 12 N -0.67 -12.09 5.34 -9.91 -0.05 -12.14 16 13 C 0.15 3.49 6.25 -83.77 -0.52 2.96 16 14 C -0.26 -5.90 9.97 -39.10 -0.39 -6.29 16 15 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 16 C -0.17 -4.60 8.69 -38.84 -0.34 -4.94 16 17 C 0.12 3.33 5.57 -106.85 -0.59 2.73 16 18 C -0.46 -12.78 9.05 -37.74 -0.34 -13.12 16 19 H 0.08 2.16 7.90 -52.48 -0.41 1.74 16 20 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 21 N -0.80 -21.00 10.94 55.55 0.61 -20.39 16 22 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.21 -5.55 8.39 -38.69 -0.32 -5.87 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 39 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.40 5.48 8.82 -40.82 -0.36 5.12 16 47 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 49 H 0.12 3.24 6.16 -52.48 -0.32 2.92 16 50 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 51 H 0.10 2.86 6.48 -52.49 -0.34 2.52 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -30.93 402.83 -10.36 -41.30 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -9.09 Total: 7.97 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.94 Total: -25.58 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.55 Total: -32.53 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.93 -10.36 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144682612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.402 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds